prot_L-elsbetiae_contig10770.718.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig10770.718.1
Unique Name	prot_L-elsbetiae_contig10770.718.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	110

Homology

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BLAST of mRNA_L-elsbetiae_contig10770.718.1 vs. uniprot
Match: D7FN41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN41_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 2.340e-66
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0

Query:    1 TAESRKEKLETWLKPLDNEQLVKLLLDIGSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALQN 110
            TAESRKEKLETWLKPLDNEQLVKLLLDIGSVNPGAFDEIHRAC+DIPVNKKIFVRGLPWET DQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFK MDGAHAAL+N
Sbjct:  114 TAESRKEKLETWLKPLDNEQLVKLLLDIGSVNPGAFDEIHRACDDIPVNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALEN 223

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BLAST of mRNA_L-elsbetiae_contig10770.718.1 vs. uniprot
Match: A0A6H5KMW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW4_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 4.410e-47
Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 0

Query:   29 GSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALQN 110
            GSVNPGAFDEIHRAC+DIPVNKKIFVRGLPWET DQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFK MDGAHAAL+N
Sbjct:   42 GSVNPGAFDEIHRACDDIPVNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALEN 123

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BLAST of mRNA_L-elsbetiae_contig10770.718.1 vs. uniprot
Match: A0A0C9QX59_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_1845_1572 transcribed RNA sequence n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0C9QX59_9SPER)

HSP 1 Score: 116 bits (291), Expect = 5.950e-29
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = 0

Query:    6 KEKLETWLKPLDNEQLVKLLLDIGSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALQ 109
            K++L+  L+PL  EQL+ ++L+IGS+NP   +EI    +  P ++K+FVRGL WET+ Q+L A FEQYGEI E  V+MDK T KS+G+GFVTFK MD A  AL+
Sbjct:   32 KDELQGLLEPLTKEQLISIMLNIGSLNPAIAEEIRDVASKDPAHRKLFVRGLAWETSSQTLCAAFEQYGEIEEGAVIMDKNTGKSRGFGFVTFKHMDSAQRALK 135

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BLAST of mRNA_L-elsbetiae_contig10770.718.1 vs. uniprot
Match: A0A2K1L9M1_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L9M1_PHYPA)

HSP 1 Score: 114 bits (285), Expect = 4.620e-28
Identity = 53/109 (48.62%), Postives = 79/109 (72.48%), Query Frame = 0

Query:    1 TAESRKEKLETWLKPLDNEQLVKLLLDIGSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALQ 109
            T +  +++L++ L+PL+ +QL+ LL++ GS+ P   D+I    +  PV++K+FVRGL WET+  +LR  FEQYGE+ EA V+ DK T KS+G+GF+TFK MD AH AL+
Sbjct:   45 TVQLTRDELKSLLEPLNKDQLIALLIEAGSLFPAVADDIRDIASKDPVHRKLFVRGLAWETSSMALREAFEQYGEVEEACVITDKGTGKSRGFGFITFKHMDSAHRALK 153

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BLAST of mRNA_L-elsbetiae_contig10770.718.1 vs. uniprot
Match: A0A2K1JG53_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JG53_PHYPA)

HSP 1 Score: 113 bits (282), Expect = 1.240e-27
Identity = 56/109 (51.38%), Postives = 77/109 (70.64%), Query Frame = 0

Query:    1 TAESRKEKLETWLKPLDNEQLVKLLLDIGSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALQ 109
            T +  +E+L+  L+PL  +QLV LL+D GS+ P   D+I  + +  PV++K+FVRGL WET+  +LR  FEQYGE+ EA V+ DK T KS+G+GFVTFK MD A  AL+
Sbjct:   45 TVKLSREELKKLLEPLSKDQLVALLIDAGSLFPAVADDIRDSASKDPVHRKLFVRGLAWETSSVALREAFEQYGEVEEACVITDKGTGKSRGFGFVTFKHMDSAQRALK 153

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BLAST of mRNA_L-elsbetiae_contig10770.718.1 vs. uniprot
Match: D8QPR6_SELML (Uncharacterized protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QPR6_SELML)

HSP 1 Score: 110 bits (275), Expect = 9.030e-27
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 0

Query:    6 KEKLETWLKPLDNEQLVKLLLDIGSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALQ 109
            K+ L+  L+PL  EQLV LL+D GS  P   D+I    +  P ++K+FVRGL WETT Q+LR  F+ YGEI E  V+ DK T KS+G+GF+TFK MD A  AL+
Sbjct:   27 KDDLKRLLEPLSKEQLVALLIDAGSQYPAVADDIRDVASKDPAHRKLFVRGLAWETTSQALRDAFQHYGEIEEGAVITDKATGKSRGFGFITFKHMDSAQRALK 130

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BLAST of mRNA_L-elsbetiae_contig10770.718.1 vs. uniprot
Match: A9NUP9_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NUP9_PICSI)

HSP 1 Score: 108 bits (271), Expect = 3.750e-26
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 0

Query:    6 KEKLETWLKPLDNEQLVKLLLDIGSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALQ 109
            K+ L + L+PL  EQL+ LL+D GS  P   +EI    +  P ++K+FVRGL WET+ Q+L   FEQYGEI E  V+MDK + KS+G+GFVTFK MD A  AL+
Sbjct:   25 KDHLHSLLEPLSKEQLISLLVDAGSSYPAIAEEIKDVASKDPAHRKLFVRGLAWETSSQTLCDAFEQYGEIEEGAVIMDKASGKSRGFGFVTFKHMDSAQKALK 128

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BLAST of mRNA_L-elsbetiae_contig10770.718.1 vs. uniprot
Match: D8RYI0_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RYI0_SELML)

HSP 1 Score: 107 bits (268), Expect = 7.440e-26
Identity = 53/101 (52.48%), Postives = 67/101 (66.34%), Query Frame = 0

Query:    9 LETWLKPLDNEQLVKLLLDIGSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALQ 109
            L+  L+PL  EQLV LL D GS      D+I    +  P ++K+FVRGL WETT Q LR  FEQ+GEI E  V++DK T KS+G+GF+TFK MD A  AL+
Sbjct:   39 LKRLLEPLSKEQLVALLTDAGSQYSAVADDIREVASKDPAHRKLFVRGLAWETTSQDLRDAFEQFGEIEEGAVIIDKATGKSRGFGFITFKHMDSAQRALK 139

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BLAST of mRNA_L-elsbetiae_contig10770.718.1 vs. uniprot
Match: A0A2R6X2I3_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X2I3_MARPO)

HSP 1 Score: 107 bits (267), Expect = 1.450e-25
Identity = 53/101 (52.48%), Postives = 67/101 (66.34%), Query Frame = 0

Query:    9 LETWLKPLDNEQLVKLLLDIGSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALQ 109
            L+  L+PL  EQL+ LL D GS      D+I    +  P ++K+FVRGL WETT Q+LR  FEQYGEI E  V+ DK T KS+G+GF+TFK MD A  AL+
Sbjct:   40 LKKLLEPLSKEQLITLLADAGSQFSAVADDIRDVASKDPAHRKLFVRGLAWETTSQALRDAFEQYGEIEEGAVITDKATGKSRGFGFITFKHMDSAQRALK 140

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BLAST of mRNA_L-elsbetiae_contig10770.718.1 vs. uniprot
Match: A0A0C9S8C9_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_11558_1868 transcribed RNA sequence n=3 Tax=Araucariaceae TaxID=25664 RepID=A0A0C9S8C9_9SPER)

HSP 1 Score: 107 bits (267), Expect = 3.480e-25
Identity = 51/107 (47.66%), Postives = 75/107 (70.09%), Query Frame = 0

Query:    3 ESRKEKLETWLKPLDNEQLVKLLLDIGSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALQ 109
            E  KE+++  L+P + +QL+++L D    +    + I +  +  P ++KIFVRGL W+T+ ++L++VF QYGE+ E TV+MDK T KSKGYGFVTFK MDGA  AL+
Sbjct:   51 EEDKEEVQKLLEPFNKDQLIEILRDAAMKDSHLMENIRKIADKDPAHRKIFVRGLGWDTSSEALKSVFSQYGELEECTVIMDKGTGKSKGYGFVTFKHMDGAKRALK 157

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig10770.718.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig10770.718.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FN41_ECTSI	2.340e-66	96.36	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KMW4_9PHAE	4.410e-47	95.12	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A0C9QX59_9SPER	5.950e-29	53.85	TSA: Wollemia nobilis Ref_Wollemi_Transcript_1845_...	[more]
A0A2K1L9M1_PHYPA	4.620e-28	48.62	Uncharacterized protein n=2 Tax=Physcomitrium pate...	[more]
A0A2K1JG53_PHYPA	1.240e-27	51.38	Uncharacterized protein n=2 Tax=Physcomitrium pate...	[more]
D8QPR6_SELML	9.030e-27	51.92	Uncharacterized protein n=1 Tax=Selaginella moelle...	[more]
A9NUP9_PICSI	3.750e-26	51.92	Uncharacterized protein n=1 Tax=Picea sitchensis T...	[more]
D8RYI0_SELML	7.440e-26	52.48	Uncharacterized protein n=3 Tax=Selaginella moelle...	[more]
A0A2R6X2I3_MARPO	1.450e-25	52.48	Uncharacterized protein n=2 Tax=Marchantia polymor...	[more]
A0A0C9S8C9_9SPER	3.480e-25	47.66	TSA: Wollemia nobilis Ref_Wollemi_Transcript_11558...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 51..109 e-value: 1.0E-9 score: 48.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 52..110 e-value: 1.6E-17 score: 63.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 50..110 score: 16.534
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 33..110 e-value: 8.4E-22 score: 79.6
None	No IPR available	PANTHER	PTHR10352	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	coord: 3..110
None	No IPR available	PANTHER	PTHR10352:SF38		coord: 3..110
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 45..109

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig10770	contig	L-elsbetiae_contig10770:574..2344 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig10770.718.1	mRNA_L-elsbetiae_contig10770.718.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig10770 574..2344 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig10770.718.1 ID=prot_L-elsbetiae_contig10770.718.1|Name=mRNA_L-elsbetiae_contig10770.718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
TAESRKEKLETWLKPLDNEQLVKLLLDIGSVNPGAFDEIHRACNDIPVNK
KIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKG
MDGAHAALQN

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf