mRNA_L-elsbetiae_contig10757.700.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10757.700.1
Unique NamemRNA_L-elsbetiae_contig10757.700.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10757.700.1 vs. uniprot
Match: D7FLL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL4_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.400e-38
Identity = 81/121 (66.94%), Postives = 92/121 (76.03%), Query Frame = 1 
Query:    1 FDETLSTESPNLQPVHTHSKRLKKKAAGPKKRRSKEVKMWFREDEFGRVVAKGVVGEDDPLD----DRHNVEPEAEEESKAKAAQLEGATTNRYGRVVVPRVALPTPKGKGKARDGAGGEA 351
            +DETLS +SPNLQPVHTHSKRLKKK    KK+R+KEVK W REDEFG +VA+G+VGEDDP D    DR   E E E E + K   +EGATTNRYGRVVVPRV L TPKGKGKA+D  G +A
Sbjct:   65 YDETLSRDSPNLQPVHTHSKRLKKKP-DRKKKRAKEVKEWIREDEFGNIVARGIVGEDDPYDPKVFDRKKAEVEGEAE-ETKPVPVEGATTNRYGRVVVPRVNLTTPKGKGKAKDPNGDDA 183
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BLAST of mRNA_L-elsbetiae_contig10757.700.1 vs. uniprot
Match: A0A6H5KNH9_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH9_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.170e-18
Identity = 49/81 (60.49%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:   85 PKKRRSKEVKMWFREDEFGRVVAKGVVGEDDPLD----DRHNVEPEAEEESKAKAAQLEGATTNRYGRVVVPRVALPTPKG 315
            P+ +  +EVK W REDEFG +VA+G+VGEDDP D    DR   E E E E K     +EGATTNRYGRVVVPRV L TPKG
Sbjct:  210 PELQAMEEVKEWIREDEFGNIVARGIVGEDDPYDPKVFDRKKAEVEGEAEEK-NPVPVEGATTNRYGRVVVPRVNLATPKG 289
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10757.700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLL4_ECTSI1.400e-3866.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNH9_9PHAE1.170e-1860.49PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10757contigL-elsbetiae_contig10757:1429..3564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue3.1e-33
Seed eggNOG ortholog2880.D7FLL4
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K06101,ko:K11424,ko:K16675
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04391,ko05202,map00310,map04391,map05202
Hectar predicted targeting categoryother localisation
EggNOG free text desc.uterine gland development
EggNOG OGsCOG2940@1,KOG1081@2759,KOG1083@2759
EC2.1.1.43,2.3.1.225
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons3
Model size366
Cds size363
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10757.700.1prot_L-elsbetiae_contig10757.700.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10757 1429..3562 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815293.1176758-CDS-L-elsbetiae_contig10757:1428..15331622815293.1176758-CDS-L-elsbetiae_contig10757:1428..1533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10757 1429..1533 +
1691682821.961019-CDS-L-elsbetiae_contig10757:1428..15331691682821.961019-CDS-L-elsbetiae_contig10757:1428..1533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10757 1429..1533 +
1622815293.1275482-CDS-L-elsbetiae_contig10757:2393..25541622815293.1275482-CDS-L-elsbetiae_contig10757:2393..2554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10757 2394..2554 +
1691682821.9729493-CDS-L-elsbetiae_contig10757:2393..25541691682821.9729493-CDS-L-elsbetiae_contig10757:2393..2554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10757 2394..2554 +
1622815293.1396053-CDS-L-elsbetiae_contig10757:3465..35621622815293.1396053-CDS-L-elsbetiae_contig10757:3465..3562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10757 3466..3562 +
1691682821.9839067-CDS-L-elsbetiae_contig10757:3465..35621691682821.9839067-CDS-L-elsbetiae_contig10757:3465..3562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10757 3466..3562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10757.700.1

>prot_L-elsbetiae_contig10757.700.1 ID=prot_L-elsbetiae_contig10757.700.1|Name=mRNA_L-elsbetiae_contig10757.700.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
FDETLSTESPNLQPVHTHSKRLKKKAAGPKKRRSKEVKMWFREDEFGRVV
AKGVVGEDDPLDDRHNVEPEAEEESKAKAAQLEGATTNRYGRVVVPRVAL
PTPKGKGKARDGAGGEAGESE
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mRNA from alignment at L-elsbetiae_contig10757:1429..3564+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10757.700.1 ID=mRNA_L-elsbetiae_contig10757.700.1|Name=mRNA_L-elsbetiae_contig10757.700.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2136bp|location=Sequence derived from alignment at L-elsbetiae_contig10757:1429..3564+ (Laminarionema elsbetiae ELsaHSoW15)
TTCGACGAGACTCTCTCGACAGAGTCGCCGAACCTGCAGCCCGTGCACAC
GCACTCCAAGCGCCTCAAGAAGAAGGCGGCCGGTCCCAAGAAGAGGCGCT
CCAAGGCGAGAAAAGTAAATAGTAATACCGTAGGTGACACAAGATACCAC
ACCCCCTGGACCGAATGCTAGAGCTCCATTACTCCGTAACGAAGACGGCG
CCAGCACCAAATGACAGATTTTCGAACAGCCCTTGACTAGATCTTTCCAA
CGCCACCCCTTCCGGCACTGTCACCCTCTTCGTTACGGAGTAATGCAGCT
CTAAAATTCGGTCCGGGGGGTGTGGTATCTTGTGTCACCTACGGTAGTTG
TTTGTCGTCGATGTTGGTGTTGAGGTGGTGGGTGTGGTGGTCGTCTTGCT
TGGTGTCGTTATTGCAATACGGTGGTCGTTGTCGTTGTCGTCACTCCTCT
GCTGTCGTTGTTGTTGGCTGGTGTTGTCGTGCGTAGTTGCTGTTGTTTTT
GTCGATGCGGCGTTTATGTCGATGCGGCGGTTTGTTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTATACCTTTGTGTTGACGGCACGGCGTGGACCAAT
CTTGTCTGATCTGGTGTGGTCTGATGTGATATGGTATGTGATATGGTATG
TGATACGTGTATGTATCTACTTCCTTACATGAACACGATGGGATCTGCCT
CTGCCTCTGCTCTGCCTCTGCTCTGCCTCTGCTCTGCTCTGCTCTGCTCT
GCTCTGCTCTGCTCTGCTCTGCTGGCTGCTGCTGCTGCTGCTGGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGC
TGCTGCTGCTGCTTCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGCTGCTG
CTGCTGCTGCTGCAGGAGGTGAAGATGTGGTTCCGAGAAGACGAGTTCGG
GAGGGTGGTGGCTAAGGGTGTGGTCGGCGAGGACGACCCTCTGGACGACA
GGCACAACGTCGAGCCCGAGGCGGAGGAGGAGTCTAAGGCCAAGGCCGCG
CAGCTGGAGGGCGCGACGACCAACAGGTGGGGGGCTCTGCTGCCTTTTCT
GCTGCCGTTTGCTCCTTTGCAGTGCAAAAAGTGCTAGCTTTAGCTTTGCT
TTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTGTCTGTCTATGTACTCAATACTCCGAGTGTGTGAAAACGTGAAAAC
CGTTCTCTCGTTGAGCCTTTTTCGTTTTGTTCTCTCGTTTTGTTTTTTTC
GTTTTTTTTCTTCTCTGGCTTTTTATTTTTTATTTTTGTCTCTAACTCCA
GTCGTATACCTTTTGTGAGGGTGCACACAGTGGCGTTGTAATCGAGTGGT
TTGTTTCTATCCTGGGCGTTTGTATAGTGATATCTCCCCTGTTATTAAAG
CAGGCTCAACAAGACTGGCTTGTTTTGTTTTTTCCGCCCTCTTTTTTCTT
TTTTTTTTTGTCTTATTTTTTTCTTCCTCGTCTTTTGTTGTTTCTTATTT
TCTCTCTGTCGTGCTTTTCCTCCGTGACCCTCATGCTCGCCCCCCCACCC
CGCGCCACGGCCTCCAGCAAGCGTTTCCCGTTTGTTTCTTTAGCTATTTT
TTTATTTTGGTTTTGGTCGGTCAGCGGCCCACACCGGTCGATGCACATTC
TACATGCATGGCTAGTACTGCTACACAATAAGATGCATGCGTACGTAACA
TACATAAATCATTTCAACATTGATCATGTTCACAACATAACGAAGTAAAG
AGCGGCCAAAAAACACACGCACGCGCGCGCACAGCAAGCAGTAGGTAGTC
CTGCTGGATAACAAAAATGCATAAACTATACAAATACATTGATGATCATG
TTGACAAAATAAAGAGGTAAATAAATACCTAAAAAAACTGCGGAAATAAC
GGCGAAATGACACACACACGCACACGCACGCGCACAGGTACGGGCGAGTA
GTCGTCCCTCGCGTGGCGCTGCCCACCCCCAAGGGCAAGGGAAAGGCGAG
GGACGGCGCGGGCGGCGAAGCGGGCGAGAGCGAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10757:1429..3564+

>mRNA_L-elsbetiae_contig10757.700.1 ID=mRNA_L-elsbetiae_contig10757.700.1|Name=mRNA_L-elsbetiae_contig10757.700.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig10757:1429..3564+ (Laminarionema elsbetiae ELsaHSoW15)
TTCGACGAGACTCTCTCGACAGAGTCGCCGAACCTGCAGCCCGTGCACAC
GCACTCCAAGCGCCTCAAGAAGAAGGCGGCCGGTCCCAAGAAGAGGCGCT
CCAAGTTCGACGAGACTCTCTCGACAGAGTCGCCGAACCTGCAGCCCGTG
CACACGCACTCCAAGCGCCTCAAGAAGAAGGCGGCCGGTCCCAAGAAGAG
GCGCTCCAAGGAGGTGAAGATGTGGTTCCGAGAAGACGAGTTCGGGAGGG
TGGTGGCTAAGGGTGTGGTCGGCGAGGACGACCCTCTGGACGACAGGCAC
AACGTCGAGCCCGAGGCGGAGGAGGAGTCTAAGGCCAAGGCCGCGCAGCT
GGAGGGCGCGACGACCAACAGGAGGTGAAGATGTGGTTCCGAGAAGACGA
GTTCGGGAGGGTGGTGGCTAAGGGTGTGGTCGGCGAGGACGACCCTCTGG
ACGACAGGCACAACGTCGAGCCCGAGGCGGAGGAGGAGTCTAAGGCCAAG
GCCGCGCAGCTGGAGGGCGCGACGACCAACAGGTACGGGCGAGTAGTCGT
CCCTCGCGTGGCGCTGCCCACCCCCAAGGGCAAGGGAAAGGCGAGGGACG
GCGCGGGCGGCGAAGCGGGCGAGAGCGAGGTACGGGCGAGTAGTCGTCCC
TCGCGTGGCGCTGCCCACCCCCAAGGGCAAGGGAAAGGCGAGGGACGGCG
CGGGCGGCGAAGCGGGCGAGAGCGAG
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