prot_L-elsbetiae_contig10750.697.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10750.697.1
Unique Nameprot_L-elsbetiae_contig10750.697.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length219
Homology
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BLAST of mRNA_L-elsbetiae_contig10750.697.1 vs. uniprot
Match: D7FRR9_ECTSI (rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR9_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.570e-36
Identity = 81/121 (66.94%), Postives = 93/121 (76.86%), Query Frame = 0 
Query:   96 SKQSAGGKRPRGEXXXXXXXXXTXXXXXXXAKAKTGSSKAKEVGSGMLVEHSGRAPRLEMVSFKKLNKGTLALGVVFKINENDMVVSLPSSLTGVVRRKEVSDYFHQRAANSSSSGNTHPG 216
            S+ SA GKRPRGE         +       +K K   S A EVGSGMLVEHSGRAPRLEMVSFKKLNKGTLA+GVVFKINE+DMVVSLPSSLTGVVRR+EVSDYFHQ+AA++ ++G+   G
Sbjct:   76 SRPSAPGKRPRGESSA------SSPGGIGASKGKKRGSTASEVGSGMLVEHSGRAPRLEMVSFKKLNKGTLAMGVVFKINEHDMVVSLPSSLTGVVRRQEVSDYFHQKAASAKNTGSNRAG 190
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BLAST of mRNA_L-elsbetiae_contig10750.697.1 vs. uniprot
Match: A0A6H5LPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPP1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 6.780e-27
Identity = 79/173 (45.66%), Postives = 91/173 (52.60%), Query Frame = 0 
Query:   96 SKQSAGGKRPRGEXXXXXXXXXTXXXXXXXAKAKTGSSKAKEVGSGMLVEHSGRAPRLEMVSFKKLNKGTLALGVVFK----------------------------------------------------INENDMVVSLPSSLTGVVRRKEVSDYFHQRAANSSSSGNTHPG 216
            S+ S  GKRPRGE         +       +K K   S   EVGSGMLVEHSGRAPRLEMVSFKKLNKGTLA+GVVFK                                                    INE+DMVVSLPSSLTGVVRR+EVSDYFHQ+AA++ ++G+   G
Sbjct:   74 SRPSVPGKRPRGESSA------SSPGSIGASKGKKRGSAGSEVGSGMLVEHSGRAPRLEMVSFKKLNKGTLAMGVVFKVRGSANLFFECTFDPSLICPLATSFPXXXXXXXXXXXXXXXXFVLPPSLTCQINEHDMVVSLPSSLTGVVRRQEVSDYFHQKAASAKNTGSKRAG 240
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10750.697.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRR9_ECTSI1.570e-3666.94rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus si... [more]
A0A6H5LPP1_9PHAE6.780e-2745.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 151..215
e-value: 1.1E-5
score: 27.1
NoneNo IPR availablePANTHERPTHR23270PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5coord: 55..208
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 155..203

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10750contigL-elsbetiae_contig10750:2931..4983 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10750.697.1mRNA_L-elsbetiae_contig10750.697.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10750 2931..4983 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10750.697.1 ID=prot_L-elsbetiae_contig10750.697.1|Name=mRNA_L-elsbetiae_contig10750.697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=219bp
SPLRAGTEQAQGHQQREQAGTELQQEAHVNMTNLELFPRGKGTSEAAAST
PKASSSSSSSSRRDGKKRKAPAGSPGAGDRGGKEKEWLFGAGGDKSKQSA
GGKRPRGESSAAAAAAATGSSSAGGAKAKTGSSKAKEVGSGMLVEHSGRA
PRLEMVSFKKLNKGTLALGVVFKINENDMVVSLPSSLTGVVRRKEVSDYF
HQRAANSSSSGNTHPGKGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold