mRNA_L-elsbetiae_contig10745.693.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10745.693.1
Unique NamemRNA_L-elsbetiae_contig10745.693.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10745.693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10745contigL-elsbetiae_contig10745:4797..5486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size387
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815292.429914-CDS-L-elsbetiae_contig10745:4796..50261622815292.429914-CDS-L-elsbetiae_contig10745:4796..5026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10745 4797..5026 +
1691682821.5051575-CDS-L-elsbetiae_contig10745:4796..50261691682821.5051575-CDS-L-elsbetiae_contig10745:4796..5026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10745 4797..5026 +
1622815292.4388793-CDS-L-elsbetiae_contig10745:5329..54861622815292.4388793-CDS-L-elsbetiae_contig10745:5329..5486Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10745 5330..5486 +
1691682821.5146139-CDS-L-elsbetiae_contig10745:5329..54861691682821.5146139-CDS-L-elsbetiae_contig10745:5329..5486Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10745 5330..5486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10745.693.1prot_L-elsbetiae_contig10745.693.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10745 4797..5486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10745.693.1

>prot_L-elsbetiae_contig10745.693.1 ID=prot_L-elsbetiae_contig10745.693.1|Name=mRNA_L-elsbetiae_contig10745.693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MAGFLLRAGARVSAGDVESTTPLHSAVMNSSAAVVVEILAFLERQDENMI
ALGAALALEECNGRTPLHTASGFGSLRSVDVLLHHGALETHRDRFGRTPL
FYARGAAGVQSVFAGTEKIGTKVVEKTEE
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mRNA from alignment at L-elsbetiae_contig10745:4797..5486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10745.693.1 ID=mRNA_L-elsbetiae_contig10745.693.1|Name=mRNA_L-elsbetiae_contig10745.693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig10745:4797..5486+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGGCTTCCTTCTGCGAGCGGGGGCTCGGGTGTCGGCGGGCGACGT
AGAGTCCACCACGCCCCTGCACTCAGCCGTGATGAACAGCTCCGCCGCGG
TAGTAGTCGAAATCCTTGCCTTTCTCGAGCGGCAGGACGAAAACATGATC
GCTCTTGGTGCGGCCCTTGCTCTTGAAGAATGCAACGGCCGCACACCGCT
TCACACTGCGTCCGGCTTCGGCAGCCTCAGGTATCGTGAAGATCGGATTC
GAGACCGGATTGATTGGTGAAAATCAAGGGAGAGATATTATGAATAGTCT
AATAGTCTTATACTAAACAAGTCTAGAGACTACCTGGTATAGATTATCAC
GTTGTTTGTCGAATCGTACCATGCATGTAGACTGGATAGACTGCATAGTT
ATGCAGAACTAGCGTAAATTATTACGCGTGTGTGTGCCACCGCCCGCGGG
TATTAGGCACCGGCGACGGATGAAAAACAAGTACCAAAGCACACAGCCAT
TGTTATCGGCGGCTGAATCTTTTGCACCCCTAGGTCTGTGGATGTACTTC
TGCACCATGGCGCCCTCGAGACCCACCGAGACCGCTTCGGCCGCACCCCC
CTGTTTTACGCACGGGGGGCGGCAGGGGTTCAGAGTGTTTTCGCAGGAAC
AGAAAAAATAGGGACCAAGGTTGTTGAGAAAACCGAGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10745:4797..5486+

>mRNA_L-elsbetiae_contig10745.693.1 ID=mRNA_L-elsbetiae_contig10745.693.1|Name=mRNA_L-elsbetiae_contig10745.693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig10745:4797..5486+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGGCTTCCTTCTGCGAGCGGGGGCTCGGGTGTCGGCGGGCGACGT
AGAGTCCACCACGCCCCTGCACTCAGCCGTGATGAACAGCTCCGCCGCGG
TAGTAGTCGAAATCCTTGCCTTTCTCGAGCGGCAGGACGAAAACATGATC
GCTCTTGGTGCGGCCCTTGCTCTTGAAGAATGCAACGGCCGCACACCGCT
TCACACTGCGTCCGGCTTCGGCAGCCTCAGATGGCGGGCTTCCTTCTGCG
AGCGGGGGCTCGGGTGTCGGCGGGCGACGTAGAGTCCACCACGCCCCTGC
ACTCAGCCGTGATGAACAGCTCCGCCGCGGTAGTAGTCGAAATCCTTGCC
TTTCTCGAGCGGCAGGACGAAAACATGATCGCTCTTGGTGCGGCCCTTGC
TCTTGAAGAATGCAACGGCCGCACACCGCTTCACACTGCGTCCGGCTTCG
GCAGCCTCAGGTCTGTGGATGTACTTCTGCACCATGGCGCCCTCGAGACC
CACCGAGACCGCTTCGGCCGCACCCCCCTGTTTTACGCACGGGGGGCGGC
AGGGGTTCAGAGTGTTTTCGCAGGAACAGAAAAAATAGGGACCAAGGTTG
TTGAGAAAACCGAGGAGGTCTGTGGATGTACTTCTGCACCATGGCGCCCT
CGAGACCCACCGAGACCGCTTCGGCCGCACCCCCCTGTTTTACGCACGGG
GGGCGGCAGGGGTTCAGAGTGTTTTCGCAGGAACAGAAAAAATAGGGACC
AAGGTTGTTGAGAAAACCGAGGAG
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