mRNA_L-elsbetiae_contig10745.692.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10745.692.1
Unique NamemRNA_L-elsbetiae_contig10745.692.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10745.692.1 vs. uniprot
Match: A0A6M1ZG26_9BACT (Phosphocholine transferase AnkX (Fragment) n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1ZG26_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 4.700e-5
Identity = 36/124 (29.03%), Postives = 52/124 (41.94%), Query Frame = 1 
Query:    7 LLEAGASVTATGVGGWTALAFAAKQGSPTVAQRLIDAGSSVSSRTLEGDTPLHFAHCGQPAGTRVXXXXXXXXXXXXXXXXXXXMKAVHAKSTSTMAVLLEAGADHTLKDRNGWQAIHYAADTG 378
            LL +   +  T  GG T+L  AA+ G   + Q L+  G+  S++   G   LHFA  G    T                     M A      + +  LLE GA+ ++ D NGW A+H A + G
Sbjct:  294 LLASHIDLNVTMTGGQTSLMAAAQNGHQAIVQFLLGKGADASTKDSAGCNALHFACIGGSLETVQVLTSHIDLKATTTSSQTPLMLAAQNGHFTVIQFLLEKGAETSITDSNGWNALHIACEAG 417
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10745.692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6M1ZG26_9BACT4.700e-529.03Phosphocholine transferase AnkX (Fragment) n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10745contigL-elsbetiae_contig10745:3498..4690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size385
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10745.692.1prot_L-elsbetiae_contig10745.692.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10745 3498..4688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815292.3777466-CDS-L-elsbetiae_contig10745:3497..36871622815292.3777466-CDS-L-elsbetiae_contig10745:3497..3687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10745 3498..3687 +
1691682821.4676766-CDS-L-elsbetiae_contig10745:3497..36871691682821.4676766-CDS-L-elsbetiae_contig10745:3497..3687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10745 3498..3687 +
1622815292.3877442-CDS-L-elsbetiae_contig10745:4051..42121622815292.3877442-CDS-L-elsbetiae_contig10745:4051..4212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10745 4052..4212 +
1691682821.476563-CDS-L-elsbetiae_contig10745:4051..42121691682821.476563-CDS-L-elsbetiae_contig10745:4051..4212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10745 4052..4212 +
1622815292.397609-CDS-L-elsbetiae_contig10745:4658..46881622815292.397609-CDS-L-elsbetiae_contig10745:4658..4688Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10745 4659..4688 +
1691682821.489736-CDS-L-elsbetiae_contig10745:4658..46881691682821.489736-CDS-L-elsbetiae_contig10745:4658..4688Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10745 4659..4688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10745.692.1

>prot_L-elsbetiae_contig10745.692.1 ID=prot_L-elsbetiae_contig10745.692.1|Name=mRNA_L-elsbetiae_contig10745.692.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
DLLLEAGASVTATGVGGWTALAFAAKQGSPTVAQRLIDAGSSVSSRTLEG
DTPLHFAHCGQPAGTRVLLKAGAQVNAVNTQGITPLMKAVHAKSTSTMAV
LLEAGADHTLKDRNGWQAIHYAADTGD
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mRNA from alignment at L-elsbetiae_contig10745:3498..4690+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10745.692.1 ID=mRNA_L-elsbetiae_contig10745.692.1|Name=mRNA_L-elsbetiae_contig10745.692.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1193bp|location=Sequence derived from alignment at L-elsbetiae_contig10745:3498..4690+ (Laminarionema elsbetiae ELsaHSoW15)
GACCTGCTCCTAGAGGCTGGGGCGTCGGTTACTGCTACGGGCGTTGGTGG
TTGGACAGCGCTGGCTTTTGCTGCCAAGCAAGGCAGCCCAACTGTAGCAC
AACGACTCATCGACGCCGGTTCAAGTGTCTCTAGCAGAACATTGGAGGGA
GACACTCCTCTGCACTTCGCCCACTGTGGCCAGCCCGCAGGTTCGAGGAA
AACTATACGGCCGCACTGCTTGTAGGCAAGGGTTGTCTGGGGTGATGCGC
GTGCCTGATGAAAACAAACTTTCTCATATTTCCGTGTGTAGTCTAGACCT
TGCAGATTCTGAGCAGTGCGTCTGGTCTGCACGCCTCCATCCCCTGGCAT
CTGCATGAACACTAGCTAGCTCAGGCTGCTCATTTACCCAGTAGGATCGA
TTGTCTCTCCCCTGCGTATAACGTAAGGAGGGTTCACCCGGCGAGAAAGC
ACTTTCTTCTCCGCCACCAAAAAGTTGTCTGTGGTGGCCGGTGGGTTTGA
AGTTTGAAGTGCCATCTGCTTATCGCTCATCACTGCCCCCGTCCCGGCTG
CCAGGGACAAGAGTGTTGCTGAAAGCTGGTGCGCAAGTCAATGCCGTCAA
CACTCAAGGCATCACCCCTCTGATGAAGGCTGTTCATGCCAAGAGCACGT
CAACGATGGCGGTTCTTCTGGAAGCAGGAGCCGACCATACGTTGAAGGAC
AGAAACGGGTGGCAGGTAATCTACAGGCAGTCCTTCCCACATGCCCCGGA
CTAAGTATCTAGTCTAAATATGAACGCTCAATGCCTACATGCGCGTTTCC
CCCACACTGTTTTTTTATTTGTTTGCGTACGTTGTTGGCCTGTCCCTGCA
AGCTGGTTTGAACCCACGAGACTACACAGATGTTACACATAGATAGATAT
AGATAACTAGTAGTCTAGAGAGTAATCTAGGTACAATGCCTAGATATCTA
TTTAGCAGGCCAAGCAGCATATCTATCTACATAGATAGGCTACACATATA
TGTAGATAGACAAACATATACTTGCCGGAGTAGGACCGATTCAACATTGA
TATCGGTAAGTGACAGCTTGGAGTAGTACGTCGCGGCGATCAACACCGTG
GTACATAGTCTATGTATCTAAACCACACCCTCAAACTATCACATATATAT
GCTCGGTGCAGGCGATTCACTACGCCGCCGACACTGGTGACCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10745:3498..4690+

>mRNA_L-elsbetiae_contig10745.692.1 ID=mRNA_L-elsbetiae_contig10745.692.1|Name=mRNA_L-elsbetiae_contig10745.692.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig10745:3498..4690+ (Laminarionema elsbetiae ELsaHSoW15)
GACCTGCTCCTAGAGGCTGGGGCGTCGGTTACTGCTACGGGCGTTGGTGG
TTGGACAGCGCTGGCTTTTGCTGCCAAGCAAGGCAGCCCAACTGTAGCAC
AACGACTCATCGACGCCGGTTCAAGTGTCTCTAGCAGAACATTGGAGGGA
GACACTCCTCTGCACTTCGCCCACTGTGGCCAGCCCGCAGGACCTGCTCC
TAGAGGCTGGGGCGTCGGTTACTGCTACGGGCGTTGGTGGTTGGACAGCG
CTGGCTTTTGCTGCCAAGCAAGGCAGCCCAACTGTAGCACAACGACTCAT
CGACGCCGGTTCAAGTGTCTCTAGCAGAACATTGGAGGGAGACACTCCTC
TGCACTTCGCCCACTGTGGCCAGCCCGCAGGGACAAGAGTGTTGCTGAAA
GCTGGTGCGCAAGTCAATGCCGTCAACACTCAAGGCATCACCCCTCTGAT
GAAGGCTGTTCATGCCAAGAGCACGTCAACGATGGCGGTTCTTCTGGAAG
CAGGAGCCGACCATACGTTGAAGGACAGAAACGGGTGGCAGGGACAAGAG
TGTTGCTGAAAGCTGGTGCGCAAGTCAATGCCGTCAACACTCAAGGCATC
ACCCCTCTGATGAAGGCTGTTCATGCCAAGAGCACGTCAACGATGGCGGT
TCTTCTGGAAGCAGGAGCCGACCATACGTTGAAGGACAGAAACGGGTGGC
AGGCGATTCACTACGCCGCCGACACTGGTGACGCGATTCACTACGCCGCC
GACACTGGTGAC
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