mRNA_L-elsbetiae_contig10738.686.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10738.686.1
Unique NamemRNA_L-elsbetiae_contig10738.686.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10738.686.1 vs. uniprot
Match: D8LJM1_ECTSI (SPX domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJM1_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.190e-26
Identity = 68/121 (56.20%), Postives = 75/121 (61.98%), Query Frame = 1 
Query:    1 DSECAFVELKTHHEAWTGDKSVKRRFKVRNSELTGVSFVLLLFTLCFLFFVDTHE-----------------------------KASKTRKALVEKLALAHEVQRLVMGKRIRPLLVTEVN 276
            DSECAFVELKTHHEAWTGDKSVKRRFK+RNSELTG  F      +  L   +  +                             K +KTRKAL+EKLALA EVQRLVMGKRIRPLLVTEV+
Sbjct:  262 DSECAFVELKTHHEAWTGDKSVKRRFKIRNSELTGF-FEGKKSAMIELDEAEVAQLPSLRAGVPGEGGGVESKSKEDTGPPVDAKTAKTRKALIEKLALAQEVQRLVMGKRIRPLLVTEVH 381
[Close]
BLAST of mRNA_L-elsbetiae_contig10738.686.1 vs. uniprot
Match: A0A367KTK0_RHIST (Vacuolar transporter chaperone (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KTK0_RHIST)

HSP 1 Score: 66.2 bits (160), Expect = 1.120e-10
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:    1 DSECAFVELKTHHEAWTGDKSVKRRFKVRNSELTGVSFVLLLFTLCFLFFVDTHEKASKTRKALVEKLALAHEVQRLVMGKRIRPLLVTEVN 276
            DS   FVE KTHHE+WTG+KSVK RF ++   L   SF+   +T   LF   T E+  K+ K + E   LA EVQ   + KR+ P++ T  N
Sbjct:  252 DSNTIFVERKTHHESWTGEKSVKARFPIKEKYLN--SFLKGEYTTDELF-AKTREQGRKSEKEIQELEQLAQEVQYTTLTKRLHPMMRTFYN 340
[Close]
BLAST of mRNA_L-elsbetiae_contig10738.686.1 vs. uniprot
Match: A0A168JC28_MUCCL (SPX domain-containing protein n=7 Tax=Mucorineae TaxID=1344963 RepID=A0A168JC28_MUCCL)

HSP 1 Score: 65.9 bits (159), Expect = 1.530e-10
Identity = 40/92 (43.48%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:    1 DSECAFVELKTHHEAWTGDKSVKRRFKVRNSELTGVSFVLLLFTLCFLFFVDTHEKASKTRKALVEKLALAHEVQRLVMGKRIRPLLVTEVN 276
            DS   FVE KTHHE WTG+KSVK RF ++   L   SF+   +T   LF   T E+  K+ K + E   LA EVQ   + KR+ P++ T  N
Sbjct:  266 DSNTIFVERKTHHEDWTGEKSVKARFPIKEKYLN--SFLQGTYTTDELF-AKTREQGRKSEKEIQELEQLAQEVQYTTLTKRLHPMMRTFYN 354
[Close]
BLAST of mRNA_L-elsbetiae_contig10738.686.1 vs. uniprot
Match: I1CUE5_RHIO9 (Propionyl-CoA carboxylase alpha chain, mitochondrial n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CUE5_RHIO9)

HSP 1 Score: 65.9 bits (159), Expect = 1.580e-10
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:    1 DSECAFVELKTHHEAWTGDKSVKRRFKVRNSELTGVSFVLLLFTLCFLFFVDTHEKASKTRKALVEKLALAHEVQRLVMGKRIRPLLVTEVN 276
            DS   FVE KTHHE+WTG+KSVK RF ++   L    F+   +T   LF   T E+  K+ K + E   LA EVQ  V+ KR+ P++ T  N
Sbjct:  867 DSNTIFVERKTHHESWTGEKSVKARFPIKEKYLNA--FLKGEYTTDELF-QKTREQGRKSEKEIQELEQLAQEVQYTVLTKRLHPMMRTFYN 955
[Close]
BLAST of mRNA_L-elsbetiae_contig10738.686.1 vs. uniprot
Match: A0A367KUS0_RHIST (Vacuolar transporter chaperone n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KUS0_RHIST)

HSP 1 Score: 64.7 bits (156), Expect = 3.910e-10
Identity = 40/92 (43.48%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:    1 DSECAFVELKTHHEAWTGDKSVKRRFKVRNSELTGVSFVLLLFTLCFLFFVDTHEKASKTRKALVEKLALAHEVQRLVMGKRIRPLLVTEVN 276
            DS   FVE KTHHE WTG+KSVK RF ++   L   SF+   +T   LF   T E+  K+ K + E   LA EVQ   + KR+ P++ T  N
Sbjct:  266 DSNTIFVERKTHHEDWTGEKSVKARFPIKEKYLN--SFLSGKYTTDELFS-KTREQGRKSEKEIQELEQLAQEVQYTTLTKRLHPMMRTFYN 354
[Close]
BLAST of mRNA_L-elsbetiae_contig10738.686.1 vs. uniprot
Match: A0A8H7SZ42_9FUNG (Propionyl-CoA carboxylase alpha chain, mitochondrial n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7SZ42_9FUNG)

HSP 1 Score: 64.3 bits (155), Expect = 5.500e-10
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:    1 DSECAFVELKTHHEAWTGDKSVKRRFKVRNSELTGVSFVLLLFTLCFLFFVDTHEKASKTRKALVEKLALAHEVQRLVMGKRIRPLLVTEVN 276
            DS   FVE KTHHE WTG+KSVK RF ++   L    F+   +T   LF   T E+  K+ K + E   LA EVQ   + KR+ P++ T  N
Sbjct:  938 DSNTVFVERKTHHEDWTGEKSVKARFPIKEKYLN--QFLNGTYTTDELF-QKTREQGRKSEKEIAELEQLAQEVQYTTLTKRLNPIMRTFYN 1026
[Close]
BLAST of mRNA_L-elsbetiae_contig10738.686.1 vs. uniprot
Match: A0A2G4T321_RHIZD (SPX-domain-containing protein n=1 Tax=Rhizopus microsporus ATCC 52813 TaxID=1340429 RepID=A0A2G4T321_RHIZD)

HSP 1 Score: 63.5 bits (153), Expect = 9.960e-10
Identity = 40/92 (43.48%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:    1 DSECAFVELKTHHEAWTGDKSVKRRFKVRNSELTGVSFVLLLFTLCFLFFVDTHEKASKTRKALVEKLALAHEVQRLVMGKRIRPLLVTEVN 276
            DS   FVE KTHHE WTG+KSVK RF ++   L    F+   +T   LFF     K  K+ K + E   LA EVQ  V+ KR+ P++ T  N
Sbjct:  266 DSNTIFVERKTHHEDWTGEKSVKARFPIKEKYLNA--FLKGEYTTDELFF---KMKGRKSEKEIQELEQLAQEVQYTVLTKRLHPMMRTFYN 352
[Close]
BLAST of mRNA_L-elsbetiae_contig10738.686.1 vs. uniprot
Match: A0A8H7R442_9FUNG (Propionyl-CoA carboxylase alpha chain, mitochondrial n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7R442_9FUNG)

HSP 1 Score: 63.5 bits (153), Expect = 1.030e-9
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:    1 DSECAFVELKTHHEAWTGDKSVKRRFKVRNSELTGVSFVLLLFTLCFLFFVDTHEKASKTRKALVEKLALAHEVQRLVMGKRIRPLLVTEVN 276
            DS   FVE KTHHE WTG+KSVK RF ++   L    F+   +T   LF   T E+  K+ K + E   LA EVQ   + KR+ P++ T  N
Sbjct:  918 DSNTVFVERKTHHEDWTGEKSVKARFPIKEKYLN--QFLDGTYTTDELF-QKTREQGRKSEKEIAELEQLASEVQYTTLTKRLHPMMRTFYN 1006
[Close]
BLAST of mRNA_L-elsbetiae_contig10738.686.1 vs. uniprot
Match: A0A168LPA9_ABSGL (SPX domain-containing protein n=2 Tax=Absidia TaxID=4828 RepID=A0A168LPA9_ABSGL)

HSP 1 Score: 62.4 bits (150), Expect = 2.540e-9
Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:    1 DSECAFVELKTHHEAWTGDKSVKRRFKVRNSELTGVSFVLLLFTLCFLFFVDTHEKASKTRKALVEKLALAHEVQRLVMGKRIRPLLVTEVN 276
            DS   FVE KTH E WTG+KSVK RF ++   L    F+   +T+  LF   T E+  K+ K + E   LA EVQ  V+ KR+ P++ T  N
Sbjct:  263 DSNTIFVERKTHREDWTGEKSVKARFPIKEKYLNA--FLKGEYTVDDLF-AKTKEQGRKSEKEIQELEQLAQEVQYRVLTKRLHPMMRTFYN 351
[Close]
BLAST of mRNA_L-elsbetiae_contig10738.686.1 vs. uniprot
Match: A0A1X2GPT5_9FUNG (SPX-domain-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GPT5_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 4.740e-9
Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:    1 DSECAFVELKTHHEAWTGDKSVKRRFKVRNSELTGVSFVLLLFTLCFLFFVDTHEKASKTRKALVEKLALAHEVQRLVMGKRIRPLLVTEVN 276
            DS   FVE KTH E WTG+KSVK RF ++   L    F+   +T+  LF   T E+  K+ K + E   LA EVQ  V+ KR+ P++ T  N
Sbjct:  263 DSNTIFVERKTHREDWTGEKSVKARFPIKEKYLNA--FLKGEYTVDELF-AKTKEQGKKSPKEIEELEQLASEVQYRVLTKRLHPMMRTFYN 351
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10738.686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJM1_ECTSI1.190e-2656.20SPX domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A367KTK0_RHIST1.120e-1043.48Vacuolar transporter chaperone (Fragment) n=1 Tax=... [more]
A0A168JC28_MUCCL1.530e-1043.48SPX domain-containing protein n=7 Tax=Mucorineae T... [more]
I1CUE5_RHIO91.580e-1043.48Propionyl-CoA carboxylase alpha chain, mitochondri... [more]
A0A367KUS0_RHIST3.910e-1043.48Vacuolar transporter chaperone n=1 Tax=Rhizopus st... [more]
A0A8H7SZ42_9FUNG5.500e-1042.39Propionyl-CoA carboxylase alpha chain, mitochondri... [more]
A0A2G4T321_RHIZD9.960e-1043.48SPX-domain-containing protein n=1 Tax=Rhizopus mic... [more]
A0A8H7R442_9FUNG1.030e-942.39Propionyl-CoA carboxylase alpha chain, mitochondri... [more]
A0A168LPA9_ABSGL2.540e-942.39SPX domain-containing protein n=2 Tax=Absidia TaxI... [more]
A0A1X2GPT5_9FUNG4.740e-942.39SPX-domain-containing protein n=1 Tax=Hesseltinell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10738contigL-elsbetiae_contig10738:5105..6107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue4.1e-22
Seed eggNOG ortholog2880.D8LJM1
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.cellular response to phosphate starvation
EggNOG OGsCOG5036@1,KOG1161@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815291.6259162-CDS-L-elsbetiae_contig10738:5104..52201622815291.6259162-CDS-L-elsbetiae_contig10738:5104..5220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10738 5105..5220 -
1691682820.9402258-CDS-L-elsbetiae_contig10738:5104..52201691682820.9402258-CDS-L-elsbetiae_contig10738:5104..5220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10738 5105..5220 -
1622815291.636376-CDS-L-elsbetiae_contig10738:5947..61071622815291.636376-CDS-L-elsbetiae_contig10738:5947..6107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10738 5948..6107 -
1691682820.9538445-CDS-L-elsbetiae_contig10738:5947..61071691682820.9538445-CDS-L-elsbetiae_contig10738:5947..6107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10738 5948..6107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10738.686.1prot_L-elsbetiae_contig10738.686.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10738 5105..6107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10738.686.1

>prot_L-elsbetiae_contig10738.686.1 ID=prot_L-elsbetiae_contig10738.686.1|Name=mRNA_L-elsbetiae_contig10738.686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
DSECAFVELKTHHEAWTGDKSVKRRFKVRNSELTGVSFVLLLFTLCFLFF
VDTHEKASKTRKALVEKLALAHEVQRLVMGKRIRPLLVTEVN
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mRNA from alignment at L-elsbetiae_contig10738:5105..6107-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10738.686.1 ID=mRNA_L-elsbetiae_contig10738.686.1|Name=mRNA_L-elsbetiae_contig10738.686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1003bp|location=Sequence derived from alignment at L-elsbetiae_contig10738:5105..6107- (Laminarionema elsbetiae ELsaHSoW15)
GACTCCGAGTGCGCGTTCGTGGAGCTCAAGACGCACCACGAGGCCTGGAC
GGGCGACAAGAGCGTCAAGCGCCGCTTCAAAGTCAGGAACTCGGAGCTGA
CCGGGGTGAGTTTTGTTTTGCTTTTGTTTACTCTTTGTTTCTTGTTTTTT
GTAGACACACGTATGTAGGCTTTTATTGTTCTACCTTCACATTTATTTCC
AGTGCTCGATGGGTTCCTTGCCACGAGGGCATCTTGCCAGAGTACTGAAC
CGTGGTCTCACAGAAGGGTTTCTTCCTCTCCCCGAGGCTCCCTTCTGCAG
TGCTTGCCTAGGATTTTTGTCGCGAGAAGGGTTCGGCTGTCCCTTGCCCT
CGTCGGCGGTGAGGTCGAACGCTTGGTACGCATGTATGTTTACGTGCAGA
CGGATATTTCGGGCGTTTGTTGGGTCCAGAGTCTGAGCGAATCGTTTGTA
TCGTGAATGCGTGCTTCAAGCAGTACATCAGCTTTGTGGAGGATGCGTTG
GGTGCGTACACGTGCGCCCCCCCCCCCTTCATACGCCAGCTACCTTTTCT
CCGCCCCTGCCTCCCCCCCTTGCTGTTCTTGAAGCAAAAACATCAACGAC
TTTCGCAACCTAAAATCTCCTTTTTTTGTTTTTTTTTGTGACATCCCAAA
TTTCGTTCCATTCCGTTCCGTTCCGTTCCGTTCCGTTCCATTCCATTCCA
CCCACACACAACAAAACAAAACGAAACGAAACGAATGTCCCGGGGGGGCA
GTTTTTCGAGGGAAAGAAGTCCTCCAAGATCGAGCTCGACGAGGCGGAGG
TGGCACAGCTTCCCACGCTCCGCGACGGCGGCGGCGGCGGCGGTGGCGGG
TCCAAGGAGGCAGCGGGCGGGCCGCCGCCGCCTTCAGACGAGAAAGCCAG
CAAGACGAGGAAGGCCTTGGTCGAGAAGCTGGCGCTGGCGCACGAGGTGC
AGCGGCTGGTCATGGGGAAGCGGATCCGGCCGCTGCTCGTCACGGAGGTA
AAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10738:5105..6107-

>mRNA_L-elsbetiae_contig10738.686.1 ID=mRNA_L-elsbetiae_contig10738.686.1|Name=mRNA_L-elsbetiae_contig10738.686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig10738:5105..6107- (Laminarionema elsbetiae ELsaHSoW15)
GACTCCGAGTGCGCGTTCGTGGAGCTCAAGACGCACCACGAGGCCTGGAC
GGGCGACAAGAGCGTCAAGCGCCGCTTCAAAGTCAGGAACTCGGAGCTGA
CCGGGGTGAGTTTTGTTTTGCTTTTGTTTACTCTTTGTTTCTTGTTTTTT
GTAGACACACGACTCCGAGTGCGCGTTCGTGGAGCTCAAGACGCACCACG
AGGCCTGGACGGGCGACAAGAGCGTCAAGCGCCGCTTCAAAGTCAGGAAC
TCGGAGCTGACCGGGGTGAGTTTTGTTTTGCTTTTGTTTACTCTTTGTTT
CTTGTTTTTTGTAGACACACACGAGAAAGCCAGCAAGACGAGGAAGGCCT
TGGTCGAGAAGCTGGCGCTGGCGCACGAGGTGCAGCGGCTGGTCATGGGG
AAGCGGATCCGGCCGCTGCTCGTCACGGAGGTAAATACGAGAAAGCCAGC
AAGACGAGGAAGGCCTTGGTCGAGAAGCTGGCGCTGGCGCACGAGGTGCA
GCGGCTGGTCATGGGGAAGCGGATCCGGCCGCTGCTCGTCACGGAGGTAA
AT
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