mRNA_L-elsbetiae_contig10728.681.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10728.681.1
Unique NamemRNA_L-elsbetiae_contig10728.681.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10728.681.1 vs. uniprot
Match: D7FVV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV0_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.640e-23
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:    4 YLDRILDSAAEGAVSLLKELPREHLGSLRLMLNQPVPSRARLEIWRLLLKHTAV 165
            YLDRILDSAAEGAVSLL+ELPREHLGSLRLMLNQ VPSRARL+IWRLLLKHTAV
Sbjct:  156 YLDRILDSAAEGAVSLLRELPREHLGSLRLMLNQAVPSRARLDIWRLLLKHTAV 209
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BLAST of mRNA_L-elsbetiae_contig10728.681.1 vs. uniprot
Match: A0A6H5KX11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX11_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.190e-22
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    4 YLDRILDSAAEGAVSLLKELPREHLGSLRLMLNQPVPSRARLEIWRLLLKHTAV 165
            YLD ILDSAAEGAVSLL+ELPREHLGSLRLMLNQ VPS+ARL+IWRLLLKHTAV
Sbjct:  228 YLDHILDSAAEGAVSLLRELPREHLGSLRLMLNQAVPSKARLDIWRLLLKHTAV 281
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10728.681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVV0_ECTSI2.640e-2394.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX11_9PHAE3.190e-2290.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10728contigL-elsbetiae_contig10728:159..335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002240.1
Exons1
Model size177
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815291.2585237-CDS-L-elsbetiae_contig10728:158..3351622815291.2585237-CDS-L-elsbetiae_contig10728:158..335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10728 159..335 -
1691682820.7772295-CDS-L-elsbetiae_contig10728:158..3351691682820.7772295-CDS-L-elsbetiae_contig10728:158..335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10728 159..335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10728.681.1prot_L-elsbetiae_contig10728.681.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10728 159..335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10728.681.1

>prot_L-elsbetiae_contig10728.681.1 ID=prot_L-elsbetiae_contig10728.681.1|Name=mRNA_L-elsbetiae_contig10728.681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=59bp
MYLDRILDSAAEGAVSLLKELPREHLGSLRLMLNQPVPSRARLEIWRLLL
KHTAVRQAY
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mRNA from alignment at L-elsbetiae_contig10728:159..335-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10728.681.1 ID=mRNA_L-elsbetiae_contig10728.681.1|Name=mRNA_L-elsbetiae_contig10728.681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=177bp|location=Sequence derived from alignment at L-elsbetiae_contig10728:159..335- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACCTCGATCGGATCCTGGACTCGGCGGCAGAGGGGGCCGTGTCCCT
GCTGAAAGAGCTCCCCCGCGAACATCTGGGAAGCCTGAGGCTGATGCTCA
ACCAGCCTGTTCCATCGCGGGCCAGGCTGGAGATCTGGCGATTGCTCCTC
AAGCACACGGCGGTAAGGCAAGCATAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10728:159..335-

>mRNA_L-elsbetiae_contig10728.681.1 ID=mRNA_L-elsbetiae_contig10728.681.1|Name=mRNA_L-elsbetiae_contig10728.681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig10728:159..335- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACCTCGATCGGATCCTGGACTCGGCGGCAGAGGGGGCCGTGTCCCT
GCTGAAAGAGCTCCCCCGCGAACATCTGGGAAGCCTGAGGCTGATGCTCA
ACCAGCCTGTTCCATCGCGGGCCAGGCTGGAGATCTGGCGATTGCTCCTC
AAGCACACGGCGGTAAGGCAAGCATATATGTACCTCGATCGGATCCTGGA
CTCGGCGGCAGAGGGGGCCGTGTCCCTGCTGAAAGAGCTCCCCCGCGAAC
ATCTGGGAAGCCTGAGGCTGATGCTCAACCAGCCTGTTCCATCGCGGGCC
AGGCTGGAGATCTGGCGATTGCTCCTCAAGCACACGGCGGTAAGGCAAGC
ATAT
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