mRNA_L-elsbetiae_contig10726.675.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10726.675.1
Unique NamemRNA_L-elsbetiae_contig10726.675.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10726.675.1 vs. uniprot
Match: A0A6H5KRV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV1_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 7.050e-70
Identity = 157/225 (69.78%), Postives = 167/225 (74.22%), Query Frame = 2 
Query:    8 GRDVDLVAGVQCAVCVRSRKQFLSQTFSSPSSPSXXXXXXXXXXXXXXXXXXXXEGEPP--LVRLLRASLQRYARVVVVVEGLLE--GXXXXXXXXRGGEHPEAVGKVEALRGASVVASRGWADTADRVQALVAREAGGGLGLAQEVTGPSLTPAQSKFLDVLLRAPTLSYPGGLFMLQAFRGRSGKEVVASSAREFQAAVPGMTAQQAAKLKLFLTTGAGRRRG 670
            GRDVDL  G QCAVCVR+RKQ LSQT SSP+SPS                    EG  P  LV LLRA+LQRYARVVVVVEGL E  GXXXXXXXX      EAVGKVEALRGASVVA RGW D AD+V+ LV RE   GLGL + VTGPSLTPAQ+KFL  LLRAPTLSYPGGL ML+AFRGRSGKEVVASSARE QA+VPGMTAQQAAKLK FL + A R RG
Sbjct: 2227 GRDVDLAVGAQCAVCVRTRKQLLSQTHSSPTSPSRR------------------EGAAPXXLVALLRAALQRYARVVVVVEGLGEDVGXXXXXXXXXXXXPREAVGKVEALRGASVVACRGWRDAADKVEGLVRREESDGLGLPKVVTGPSLTPAQTKFLSALLRAPTLSYPGGLLMLEAFRGRSGKEVVASSARELQASVPGMTAQQAAKLKRFLMSAAFRGRG 2433
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BLAST of mRNA_L-elsbetiae_contig10726.675.1 vs. uniprot
Match: D7FP48_ECTSI (DEAD box helicase similar to CG7922-PA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP48_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 2.260e-49
Identity = 118/159 (74.21%), Postives = 127/159 (79.87%), Query Frame = 2 
Query:  206 SLQRYARVVVVVEGLLE---GXXXXXXXXRGGEHP-EAVGKVEALRGASVVASRGWADTADRVQALVAREAGGGLGLAQEVTGPSLTPAQSKFLDVLLRAPTLSYPGGLFMLQAFRGRSGKEVVASSAREFQAAVPGMTAQQAAKLKLFLTTGAGRRRG 670
            +LQRYARVVV VEGL E   G XXXXXXX     P EAVGKVEALRGASVVA +GW D AD+V+ LV RE   G GL + VTGPSLTPAQ+KFL  LLRAPTLSYPGGL ML+AFRGRSGKEVVASSARE QA+VPGMTAQQAAKLK FL + A R RG
Sbjct: 2496 ALQRYARVVVAVEGLGEDVGGSXXXXXXXXXXXXPREAVGKVEALRGASVVACQGWRDAADKVEGLVRREENDGFGLPKVVTGPSLTPAQTKFLSALLRAPTLSYPGGLLMLEAFRGRSGKEVVASSARELQASVPGMTAQQAAKLKRFLMSTAFRGRG 2654
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10726.675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRV1_9PHAE7.050e-7069.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP48_ECTSI2.260e-4974.21DEAD box helicase similar to CG7922-PA n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10726contigL-elsbetiae_contig10726:1791..4161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size1120
Cds size633
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10726.675.1prot_L-elsbetiae_contig10726.675.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10726 1791..3675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815290.9435527-CDS-L-elsbetiae_contig10726:1790..22231622815290.9435527-CDS-L-elsbetiae_contig10726:1790..2223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10726 1791..2223 +
1691682820.6146314-CDS-L-elsbetiae_contig10726:1790..22231691682820.6146314-CDS-L-elsbetiae_contig10726:1790..2223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10726 1791..2223 +
1622815290.9553187-CDS-L-elsbetiae_contig10726:2910..30471622815290.9553187-CDS-L-elsbetiae_contig10726:2910..3047Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10726 2911..3047 +
1691682820.6272109-CDS-L-elsbetiae_contig10726:2910..30471691682820.6272109-CDS-L-elsbetiae_contig10726:2910..3047Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10726 2911..3047 +
1622815290.966416-CDS-L-elsbetiae_contig10726:3612..36751622815290.966416-CDS-L-elsbetiae_contig10726:3612..3675Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10726 3613..3675 +
1691682820.6383536-CDS-L-elsbetiae_contig10726:3612..36751691682820.6383536-CDS-L-elsbetiae_contig10726:3612..3675Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10726 3613..3675 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815290.9758906-UTR-L-elsbetiae_contig10726:3675..41611622815290.9758906-UTR-L-elsbetiae_contig10726:3675..4161Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10726 3676..4161 +
1691682820.6481352-UTR-L-elsbetiae_contig10726:3675..41611691682820.6481352-UTR-L-elsbetiae_contig10726:3675..4161Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10726 3676..4161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10726.675.1

>prot_L-elsbetiae_contig10726.675.1 ID=prot_L-elsbetiae_contig10726.675.1|Name=mRNA_L-elsbetiae_contig10726.675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=211bp
GARAGRRPGGRRAVRGVRAQPEAVPVADLFVAVVAVVAAAVGVLFFYFFF
ADLFSTRGRAAARTALEGESPALRARGCGRGGAAGGWCAGWRRRPRRRAP
RSCWEGRGPARGECRRQPRVGGHGGQGAGAGRARGGRGLGAGSGGHRAVA
YARPVQVPGRVAESADAVVPGGTLHAAGLSRAIRQRGCRKLCARVPGRRS
GHDGAAGRQA*
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mRNA from alignment at L-elsbetiae_contig10726:1791..4161+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10726.675.1 ID=mRNA_L-elsbetiae_contig10726.675.1|Name=mRNA_L-elsbetiae_contig10726.675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2371bp|location=Sequence derived from alignment at L-elsbetiae_contig10726:1791..4161+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGCTCGGGCGGGACGTCGACCTGGTGGCCGGCGTGCAGTGCGCGGTGT
GCGTGCGCAGCCGGAAGCAGTTCCTGTCGCAGACCTTTTCGTCGCCGTCG
TCGCCGTCGTCGCCGCCGCCGTCGGCGTCCTCTTCTTCTACTTCTTCTTC
GCGGACCTCTTCTCGACGAGAGGGAGAGCCGCCGCTCGTACGGCTCTTGA
GGGCGAGTCTCCAGCGCTACGCGCGCGTGGTTGTGGTCGTGGAGGGGCTG
CTGGAGGGTGGTGTGCAGGGTGGCGGCGGCGGCCGCGGCGGCGAGCACCC
AGAAGCTGTTGGGAAGGTCGAGGCCCTGCGCGGGGCGAGTGTCGTCGCCA
GCCGAGGGTGGGCGGACACGGCGGACAGGGTGCAGGCGCTGGTCGCGCGA
GAGGCGGGCGGGGGCTTGGGGCTGGCTCAGGAGGTGAGCGGGCGCCAACT
TTTCTTATTTTTTTTTAAGTAGCCTCTTACGGTATGGTGGCGCGCGGTAA
TTATTGATTCTCGATTGAGAATCCAGAGTCGGTCGGGGAGGATGACAGGA
AGAAAAGTGCCAAGCGGCGGTCCTTGCTTGGATCATTGGCTCGAGTTGGT
TCTCCGTAGGTAAGCTTTCATCGTCATCTGCCCCCGTGCACCGCTGTCAA
GGGGTGTCCTTGCCAAGTTAGTTCCCCAAGTAGCAAATTTCGAGAGAAAG
AGAGAGAGAGAGTAGCACGGGACGGGACCGTCGGTCCTGTCGGGGACCGC
GCGTGCCGCGCTGTTGCTGCTGCACACGGGGGTGATGATTGCCATGATGA
TGATGGCGCCGTGCTTTCTCCTCTCCTTTCTCTCGATCTCACACCGCCGG
CCGGGTGGCGCACCCTCCCTCATCAGCCCCGCCGCCGGTTGACGGCGGCC
CCTCCCCGACCGGCTCGCCAGGAAAGGGGGGCCCCGCGTAAATATCTGGG
TACATACATGAGAAATATGCTACTTCACCATACATAGCATGTTGTCCTCT
CGTTTTTTTATTCCCATTCCAGTCGAACGTCTTCGTCCGGTCGATTCCCG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTCTCTCCGTGTGTGTG
TGTGTGGCATACATGCACAGGTCACCGGGCCGTCGCTTACGCCCGCCCAG
TCCAAGTTCCTGGACGTGTTGCTGAGAGCGCCGACGCTGTCGTACCCGGG
GGGACTCTTCATGCTGCAGGCCTTTCGCGGGCGATCCGGCAAAGAGGTTG
TCGCAAGGTAAAGGCGGGAGGATGGGATATTAATCGATGTACGAAGTTAC
AAGCGTCAGCAGTCTATGTCCAGGGGGAATTTGAAGGAATCTGGGGAGCA
CACCCGCTCCAAAAAGGTCTCGGGAGAATTGAGTCATTCCCCGACGAAGA
CAGCAGGAGCGGGGCGGAAGGTTAAAACAGGCGAAGAGTTGGATAGTAAA
ACAGGAGCTCTTTATTGAGCTACTGTTGTATGTATTTAACAAGGGCATGC
AGGCAGGCGCACCCAAGCTCGAGCGTTCCGACGCGCTGGTATTTTCAGCG
ACGCTTCATGAAACAAATCCCGGCACCACGTTTTATTGCGGCACACAACA
CGTCAACCAGCCCCCCCCCCCCCCCCCGCCTCCGCCTCCGGCCCCGGCCC
CGGCCTCGTTTCTCCCATGCTGACGTCCTTGCCCCGCCCTCTCATGGTTC
GAAAACGGGACCCGCCCCCTGGTTGCGCCGCGCGCGTCCGTCCGTCCGTC
CCCTGGATGTTTTGCTGTTTTTTTGTCTCCTTCCGGTGCCTCGGGTGATC
GATTGGCAACAATGGTTGGCAGCTCTGCGCGCGAGTTCCAGGCCGCCGTT
CCGGGCATGACGGCGCAGCAGGCCGCCAAGCTTAAGCTATTTTTGACGAC
CGGGGCCGGCAGGAGAAGGGGGTAGGGTAGCGGTGGCGGTGCCCCCCCTC
TCCGGGGTCGGTGGGTCGGTCGCTACTGCGTAGGGACGCAAGGCTTTGCC
GTCCTCAGATGTACGATAGTAAAGGTGAAATCTTACATATACGGAGTAAT
TATTGTCTGCTGCGGTCGGTTGCTATTTATGCTGCTGCTGCTGCTGCTGC
CGACGATGGGCGAAAGAGCTCGGATGCTTCATCCGAGTGAGATGTAGTCT
AGGTCTCTGTTCGTTCACGGGAGTTTTTATACGATGGGGGTGAGCGGTGT
ACGTTGGTGGTGTTTTCCCGGCAGTGGCGTGGCGTGGAGCTGTAGTCATG
ACGGGTAGGTGTCGGTGTATGCATACGATGCGGGGCGGAGTTTCCTTGAG
GGCTTGTAGTCTAAACCCTTTCCTTGCGATGTTTACTAAATAATGAGGCA
CGCTGTGCGTGTAATAACACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10726:1791..4161+

>mRNA_L-elsbetiae_contig10726.675.1 ID=mRNA_L-elsbetiae_contig10726.675.1|Name=mRNA_L-elsbetiae_contig10726.675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1266bp|location=Sequence derived from alignment at L-elsbetiae_contig10726:1791..4161+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGCTCGGGCGGGACGTCGACCTGGTGGCCGGCGTGCAGTGCGCGGTGT
GCGTGCGCAGCCGGAAGCAGTTCCTGTCGCAGACCTTTTCGTCGCCGTCG
TCGCCGTCGTCGCCGCCGCCGTCGGCGTCCTCTTCTTCTACTTCTTCTTC
GCGGACCTCTTCTCGACGAGAGGGAGAGCCGCCGCTCGTACGGCTCTTGA
GGGCGAGTCTCCAGCGCTACGCGCGCGTGGTTGTGGTCGTGGAGGGGCTG
CTGGAGGGTGGTGTGCAGGGTGGCGGCGGCGGCCGCGGCGGCGAGCACCC
AGAAGCTGTTGGGAAGGTCGAGGCCCTGCGCGGGGCGAGTGTCGTCGCCA
GCCGAGGGTGGGCGGACACGGCGGACAGGGTGCAGGCGCTGGTCGCGCGA
GAGGCGGGCGGGGGCTTGGGGCTGGCTCAGGAGGGAGCTCGGGCGGGACG
TCGACCTGGTGGCCGGCGTGCAGTGCGCGGTGTGCGTGCGCAGCCGGAAG
CAGTTCCTGTCGCAGACCTTTTCGTCGCCGTCGTCGCCGTCGTCGCCGCC
GCCGTCGGCGTCCTCTTCTTCTACTTCTTCTTCGCGGACCTCTTCTCGAC
GAGAGGGAGAGCCGCCGCTCGTACGGCTCTTGAGGGCGAGTCTCCAGCGC
TACGCGCGCGTGGTTGTGGTCGTGGAGGGGCTGCTGGAGGGTGGTGTGCA
GGGTGGCGGCGGCGGCCGCGGCGGCGAGCACCCAGAAGCTGTTGGGAAGG
TCGAGGCCCTGCGCGGGGCGAGTGTCGTCGCCAGCCGAGGGTGGGCGGAC
ACGGCGGACAGGGTGCAGGCGCTGGTCGCGCGAGAGGCGGGCGGGGGCTT
GGGGCTGGCTCAGGAGGTCACCGGGCCGTCGCTTACGCCCGCCCAGTCCA
AGTTCCTGGACGTGTTGCTGAGAGCGCCGACGCTGTCGTACCCGGGGGGA
CTCTTCATGCTGCAGGCCTTTCGCGGGCGATCCGGCAAAGAGGTTGTCGC
AAGGTCACCGGGCCGTCGCTTACGCCCGCCCAGTCCAAGTTCCTGGACGT
GTTGCTGAGAGCGCCGACGCTGTCGTACCCGGGGGGACTCTTCATGCTGC
AGGCCTTTCGCGGGCGATCCGGCAAAGAGGTTGTCGCAAGCTCTGCGCGC
GAGTTCCAGGCCGCCGTTCCGGGCATGACGGCGCAGCAGGCCGCCAAGCT
TAACTCTGCGCGCGAGTTCCAGGCCGCCGTTCCGGGCATGACGGCGCAGC
AGGCCGCCAAGCTTAA
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