mRNA_L-elsbetiae_contig10720.671.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10720.671.1
Unique NamemRNA_L-elsbetiae_contig10720.671.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10720.671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10720contigL-elsbetiae_contig10720:4031..6425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size471
Cds size333
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10720.671.1prot_L-elsbetiae_contig10720.671.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10720 4031..4363 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815290.687117-CDS-L-elsbetiae_contig10720:4030..43631622815290.687117-CDS-L-elsbetiae_contig10720:4030..4363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10720 4031..4363 -
1691682820.4526336-CDS-L-elsbetiae_contig10720:4030..43631691682820.4526336-CDS-L-elsbetiae_contig10720:4030..4363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10720 4031..4363 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815290.696766-UTR-L-elsbetiae_contig10720:4363..44171622815290.696766-UTR-L-elsbetiae_contig10720:4363..4417Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10720 4364..4417 -
1691682820.4634707-UTR-L-elsbetiae_contig10720:4363..44171691682820.4634707-UTR-L-elsbetiae_contig10720:4363..4417Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10720 4364..4417 -
1622815290.7447627-UTR-L-elsbetiae_contig10720:6343..64251622815290.7447627-UTR-L-elsbetiae_contig10720:6343..6425Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10720 6344..6425 -
1691682820.472562-UTR-L-elsbetiae_contig10720:6343..64251691682820.472562-UTR-L-elsbetiae_contig10720:6343..6425Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10720 6344..6425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10720.671.1

>prot_L-elsbetiae_contig10720.671.1 ID=prot_L-elsbetiae_contig10720.671.1|Name=mRNA_L-elsbetiae_contig10720.671.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MMPGPSDSGSRAGCDLDGSRPPQHETSLVMMEEQEGDPKNSHNLAMVEEQ
EQRRDAKNDRNLAMAEEQEQGRDSKNRQRMWDILRYSSLQAVAELEAARA
TSKELDRRERE
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mRNA from alignment at L-elsbetiae_contig10720:4031..6425-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10720.671.1 ID=mRNA_L-elsbetiae_contig10720.671.1|Name=mRNA_L-elsbetiae_contig10720.671.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2395bp|location=Sequence derived from alignment at L-elsbetiae_contig10720:4031..6425- (Laminarionema elsbetiae ELsaHSoW15)
ACGAGTTGTCCCGACAGGGCCGAACATCGAGTGCTGTACGCTTGAGTGTG
CTGGCTGTGGTGGATTTGGCCAGTTGCGCTAGGTGAGTGGGCCAAGAAGT
ATGAAAACCCTACACCCACGTGCCCGGTTTTTGAAAACAGCGATTGTTCG
TTGTCTTGAAAAATGAGTTGCGAATTCGTACATGTATGCGTTGGGTTCAA
CTGCCAACCGCCCTATATGTACATAAGTCGAATGGAGTTACTGAAGCTAC
GCTCGCCAGCTAACAGGAGCACACTGTGTGCGCTGATTATTGGAGTCGGG
CGCAAACGCCTCGCAGTTCGTGCTGTGCTGGCACAGCGATTTCGTTGTCT
TGAACAATGAGTTGCGAATTCGTTGCCTTTATTGTATGTAGTTCAGCTGC
CGTCAAACTTGGTCAAACTGTCCCGTAATCGGAAACCGTTCTGTGTGACC
ACCATTCAGTACTCTGGCAAGATGCCCTCGTGGCAAGGAGCCCATCTCGA
GCACTGGAAATCAATATGAAGAAGGAAAAAAAAACGAGCGGAGTTTATCT
GTCTACTGATTTTACATATATCTAGACTATATGTACGAGAGTTAGCTATG
TGTTACTGTTGTTATACGTAGTAGTCTATGAGCTCTCGAGCCAGAAGGAT
GATCACTACTGCTGTGTGAGTTGATCAGTGTTGCTGGGGTAGAAGCGCCT
CTACTGATGGCACCACGACGAAGACGTAACTTGTAAATAGTAGTTGGAAC
TGCGTGACACGCAAGTCTCTGCTGGTCCTGTGTCCGCCGTACGTGGCACG
TCTTCGCTCAGCAGCCAGCAAACATCTGTGGTGGAAGTATGTATGCACAT
AAGTGCGAAAGAAGTGGCAGCAGCCAATGCTCCATGGCAACACCAAATCT
GCGATAGATAACAGAAAATGTGTACCTGCTTCACATATTTAGTCCAGGCC
TGACGAACACGTACATACATGTATGACATCTCAACGCGACGTGGACAAAC
CCAGGCGCACGTCATCCTCAGCATTGTTGTGTACATAGTTCTAGATGTGC
CTTGCGACCCGAAAGGACTGCCTCGCCATCAGTCGGCTGCTCTTGTGTGG
GAGGGAGGGAGGGAGGTCGCAAGGGTCGTTGTCTTGGCTTTGCTGTCCTC
CTGTTGGTCGGCGGCGCTTTGGGGGCGCCGTGCCGCCCGACTCTGACAAG
ACAACTTCGCCGGCGCCTGCTGCCCGAGCAGTGGAGGTACCCGCACTACA
ATACAACAACAACAACAACCAACCGCCAAAACAGCAAAATGAGAGAGCAA
AAAACGCCGTGTAGATAGACCAAAAACTGCAAATAAAACAATAGCAAAAA
TCACAGTATCGTAGTCTACTGTAGAAGCATTAATTTGTGAAACGGGACAG
GACCCAGCAACCCTATATACTTGTTCCGGGTGACAGCAGTGTTTCCTTTT
AAAGCTATACTATTCGTATTACCATAAGACTAACACCGTCATTCGCTGCT
TTAAAGTTGTCGTGCCCACAAGCCTGCTTACATTTCCCTACATTTGATAT
GCATCCGCTAGATACACCTACCGTAGGTGACACAAGATACCACACCCCTT
GAGACATTTTCAAAGCTCGATCCCTCCCCAGCGAGGAGAGTGCCAGTGCC
ACAAGGGGGTGGCGTTGGAAAGATCTAGTCAAGAGCTGTCCGAAAATATG
TCATTTGGTGCTGACACCCTCTTCGTTATGGAGTAATGGGGCTCTAAAAG
TCGGTCCAGGTATCCTGTGTCACATACGGCAACAGACCCTCCGAAGACTA
CTAGGTGTGTCACTTGTGAACTGCTCGAAGTATGATTTTGTGAATTTTTT
GCTGTGGTTTGGGACGGTGGGGGGGGGGTAACGTGTCTGCAACAGTCCCC
CTGGAACGAATTTTCCACCGATGAAATGCAGGCCGCTGACTATATCAAGT
AGAACATTTGAACATTTATTAAAAACCCGCGTGTTGTCTTTCGACTCGCA
CATGCCAGGAAGGAGCCTTGGACAGGCACACACAGCACGCACAACCAAGG
CGTACGTACGTGATGATGCCGGGACCAAGTGACAGCGGTAGCCGCGCTGG
CTGCGACTTGGACGGCAGTCGACCACCCCAACACGAGACAAGCTTAGTCA
TGATGGAAGAGCAAGAGGGAGACCCCAAGAACAGCCACAACTTAGCCATG
GTGGAAGAGCAAGAACAACGACGAGACGCCAAGAACGACCGAAACTTAGC
CATGGCGGAAGAGCAAGAACAAGGGCGAGACTCCAAGAACCGCCAGCGAA
TGTGGGATATTCTCAGATACTCGTCCCTCCAGGCGGTGGCGGAGCTAGAG
GCAGCACGGGCGACATCCAAGGAGCTTGACCGGAGAGAGAGGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10720:4031..6425-

>mRNA_L-elsbetiae_contig10720.671.1 ID=mRNA_L-elsbetiae_contig10720.671.1|Name=mRNA_L-elsbetiae_contig10720.671.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig10720:4031..6425- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGCCGGGACCAAGTGACAGCGGTAGCCGCGCTGGCTGCGACTTGGA
CGGCAGTCGACCACCCCAACACGAGACAAGCTTAGTCATGATGGAAGAGC
AAGAGGGAGACCCCAAGAACAGCCACAACTTAGCCATGGTGGAAGAGCAA
GAACAACGACGAGACGCCAAGAACGACCGAAACTTAGCCATGGCGGAAGA
GCAAGAACAAGGGCGAGACTCCAAGAACCGCCAGCGAATGTGGGATATTC
TCAGATACTCGTCCCTCCAGGCGGTGGCGGAGCTAGAGGCAGCACGGGCG
ACATCCAAGGAGCTTGACCGGAGAGAGAGGGAGATGATGCCGGGACCAAG
TGACAGCGGTAGCCGCGCTGGCTGCGACTTGGACGGCAGTCGACCACCCC
AACACGAGACAAGCTTAGTCATGATGGAAGAGCAAGAGGGAGACCCCAAG
AACAGCCACAACTTAGCCATGGTGGAAGAGCAAGAACAACGACGAGACGC
CAAGAACGACCGAAACTTAGCCATGGCGGAAGAGCAAGAACAAGGGCGAG
ACTCCAAGAACCGCCAGCGAATGTGGGATATTCTCAGATACTCGTCCCTC
CAGGCGGTGGCGGAGCTAGAGGCAGCACGGGCGACATCCAAGGAGCTTGA
CCGGAGAGAGAGGGAG
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