mRNA_L-elsbetiae_contig1071.664.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1071.664.1
Unique NamemRNA_L-elsbetiae_contig1071.664.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1071.664.1 vs. uniprot
Match: A0A6H5L9G8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.130e-17
Identity = 75/180 (41.67%), Postives = 95/180 (52.78%), Query Frame = -1 
Query:   11 STKGSQLNLDQIEDILSPFFSGR---RERLLTDGEDGTPTTKAAEDPRSHTDGRDRHRKSMPGPLGELNASAGAGGGRGEAPPE--EVRQTGYRQTASASXXXXXXRDSSP-------PGGASHRPPRGNAQPQKKIRFAGELGAFLDGEEMWSDVAVMEAERKAEADILPQHAARIQHQ 514
            +  GSQL+LDQ ++ILSPFF      R  +            AA  P      R R R++M  P G+ +     GG  G AP +  EV       TA A+XXXXXX   SP       P G SHRP RG+ + +KKIRF G +G FLDG  +W+D AVMEAERKA  + +PQ   +  HQ
Sbjct:    6 TANGSQLSLDQCDEILSPFFKSAPSGRVAVAXXXXXXXXXXXAATYPPGPQGDRHRDRQAMADPRGDCSP----GGASGGAPTKLGEVDPCSRGDTAVAAXXXXXXXXDSPAPEANAIPSGTSHRPRRGSKRSRKKIRFTGAMGQFLDGRGVWNDFAVMEAERKAGLN-MPQFLQQPDHQ 180
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1071.664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L9G8_9PHAE1.130e-1741.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1071contigL-elsbetiae_contig1071:15000..15597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size598
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1071.664.1prot_L-elsbetiae_contig1071.664.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1071 15013..15345 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815289.6579196-UTR-L-elsbetiae_contig1071:14999..150121622815289.6579196-UTR-L-elsbetiae_contig1071:14999..15012Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1071 15000..15012 +
1691682819.7665308-UTR-L-elsbetiae_contig1071:14999..150121691682819.7665308-UTR-L-elsbetiae_contig1071:14999..15012Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1071 15000..15012 +
1622815289.684403-UTR-L-elsbetiae_contig1071:15345..155971622815289.684403-UTR-L-elsbetiae_contig1071:15345..15597Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1071 15346..15597 +
1691682819.7828524-UTR-L-elsbetiae_contig1071:15345..155971691682819.7828524-UTR-L-elsbetiae_contig1071:15345..15597Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1071 15346..15597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815289.6737611-CDS-L-elsbetiae_contig1071:15012..153451622815289.6737611-CDS-L-elsbetiae_contig1071:15012..15345Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1071 15013..15345 +
1691682819.7749379-CDS-L-elsbetiae_contig1071:15012..153451691682819.7749379-CDS-L-elsbetiae_contig1071:15012..15345Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1071 15013..15345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1071.664.1

>prot_L-elsbetiae_contig1071.664.1 ID=prot_L-elsbetiae_contig1071.664.1|Name=mRNA_L-elsbetiae_contig1071.664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MLDPGRVLRQNVRLGFALRFHHRYVAPHLLPVKKSSQFTCEANLFLRLCV
TPWGAMRSAAGGRAISWCSSSSRSRSRLTISCLPNFFWRCFPTPPPGASA
CIKLPQRTRH*
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mRNA from alignment at L-elsbetiae_contig1071:15000..15597+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1071.664.1 ID=mRNA_L-elsbetiae_contig1071.664.1|Name=mRNA_L-elsbetiae_contig1071.664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=598bp|location=Sequence derived from alignment at L-elsbetiae_contig1071:15000..15597+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCGTCTTTTTGATGCTGGATCCGGGCCGCGTGCTGCGGCAGAATGTCC
GCCTCGGCTTTGCGCTCCGCTTCCATCACCGCTACGTCGCTCCACATCTC
CTCCCCGTCAAGAAAAGCTCCCAGTTCACCTGCGAAGCGAATCTTTTTTT
GCGGCTGTGCGTTACCCCTTGGGGGGCGATGAGAAGCGCCGCCGGGGGGA
GAGCTATCTCTTGGTGCAGCAGCAGCAGCCGAAGCAGAAGCCGTCTGACG
ATATCCTGTCTGCCGAACTTCTTCTGGCGGTGCTTCCCCACGCCCCCCCC
CGGCGCCAGCGCTTGCATTAAGCTCCCCCAGAGGACCCGGCATTGATTTC
CGATGCCGATCTCGACCGTCAGTGTGGCTGCGGGGATCTTCTGCCGCCTT
CGTCGTTGGCGTCCCGTCTTCCCCGTCTGTGAGTAACCGTTCACGCCGCC
CTGAAAAAAACGGTGATAAGATGTCTTCGATCTGGTCCAGGTTCAGCTGG
CTACCTTTCGTCGACCTCATCCAGGTTGATATTTCTACGTTCCCACGGCC
ACGGGGGGGGAGGGTGTCCCTCAGCCAGCCAGAGAGTCACTCTAGACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1071:15000..15597+

>mRNA_L-elsbetiae_contig1071.664.1 ID=mRNA_L-elsbetiae_contig1071.664.1|Name=mRNA_L-elsbetiae_contig1071.664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig1071:15000..15597+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGATCCGGGCCGCGTGCTGCGGCAGAATGTCCGCCTCGGCTTTGC
GCTCCGCTTCCATCACCGCTACGTCGCTCCACATCTCCTCCCCGTCAAGA
AAAGCTCCCAGTTCACCTGCGAAGCGAATCTTTTTTTGCGGCTGTGCGTT
ACCCCTTGGGGGGCGATGAGAAGCGCCGCCGGGGGGAGAGCTATCTCTTG
GTGCAGCAGCAGCAGCCGAAGCAGAAGCCGTCTGACGATATCCTGTCTGC
CGAACTTCTTCTGGCGGTGCTTCCCCACGCCCCCCCCCGGCGCCAGCGCT
TGCATTAAGCTCCCCCAGAGGACCCGGCATTGAATGCTGGATCCGGGCCG
CGTGCTGCGGCAGAATGTCCGCCTCGGCTTTGCGCTCCGCTTCCATCACC
GCTACGTCGCTCCACATCTCCTCCCCGTCAAGAAAAGCTCCCAGTTCACC
TGCGAAGCGAATCTTTTTTTGCGGCTGTGCGTTACCCCTTGGGGGGCGAT
GAGAAGCGCCGCCGGGGGGAGAGCTATCTCTTGGTGCAGCAGCAGCAGCC
GAAGCAGAAGCCGTCTGACGATATCCTGTCTGCCGAACTTCTTCTGGCGG
TGCTTCCCCACGCCCCCCCCCGGCGCCAGCGCTTGCATTAAGCTCCCCCA
GAGGACCCGGCATTGA
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