prot_L-elsbetiae_contig10707.661.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig10707.661.1
Unique Name	prot_L-elsbetiae_contig10707.661.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	178

Homology

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BLAST of mRNA_L-elsbetiae_contig10707.661.1 vs. uniprot
Match: D8LDI5_ECTSI (MscS Mechanosensitive ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDI5_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 2.340e-60
Identity = 105/141 (74.47%), Postives = 123/141 (87.23%), Query Frame = 0

Query:    5 DLSPIGFTFSSVIIFIGMRSSLRIMGKQRKRVKSEAAKFDVERDEFMNVEGEAEFDVDIMKELRDMKEKMAGPGDTYAKDTRAYNPEFAAAAGDEDEYDKKIQEALKGTGKGGKTNKGETRKVFTKDEPTNVDSGSSAKKD 145
            DLSP+G TFS+ +   GMR+SLR M  QRKRVK E+AKFD E+DEFM+V+GEAEFDVDIMKELRDMKEKMAGPGD+YAKDTRAYNP+FAAAAGDE+EYDKKI+EAL+GTGK GK+NKGETRKVFT +EPT   + +S  +D
Sbjct:  143 DLSPLGLTFSAFLFVTGMRASLRSMSNQRKRVKVESAKFDAEKDEFMDVDGEAEFDVDIMKELRDMKEKMAGPGDSYAKDTRAYNPDFAAAAGDEEEYDKKIKEALEGTGKAGKSNKGETRKVFT-NEPTTGPTAASGDQD 282

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BLAST of mRNA_L-elsbetiae_contig10707.661.1 vs. uniprot
Match: A0A6H5KGP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP0_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 4.860e-59
Identity = 106/141 (75.18%), Postives = 122/141 (86.52%), Query Frame = 0

Query:    5 DLSPIGFTFSSVIIFIGMRSSLRIMGKQRKRVKSEAAKFDVERDEFMNVEGEAEFDVDIMKELRDMKEKMAGPGDTYAKDTRAYNPEFAAAAGDEDEYDKKIQEALKGTGKGGKTNKGETRKVFTKDEPTNVDSGSSAKKD 145
            DLSP+G TFS+ +   GMR+SLR M  QRKRVK E+AKFD E+DEFMNV+GEAEFDVDIMKELRDMKEKMAGPGD YAKDTRAYNP+FAAAAGDE+EYDKKI+EAL+GTGK GK+NKGETRKVFT +EPT   + +S  +D
Sbjct:  310 DLSPLGLTFSAFLFVTGMRASLRSMSNQRKRVKVESAKFDAEKDEFMNVDGEAEFDVDIMKELRDMKEKMAGPGDKYAKDTRAYNPDFAAAAGDEEEYDKKIREALEGTGKAGKSNKGETRKVFT-NEPTTGPTAASGDED 449

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BLAST of mRNA_L-elsbetiae_contig10707.661.1 vs. uniprot
Match: A0A835YR84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR84_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.860e-12
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 0

Query:   29 MGKQRKRVKSEAAKFDVERDEFMNVEGEAEFDVDIMKELRDMKEKMAGPGDTYAKDTRAYNPEFAA 94
            M  QRKR++ E  KF    +E M VEGE  ++ D+M+ELR MKE+  GPGD YAK+TR YNPEFAA
Sbjct:   97 MNAQRKRIREENTKFQQNAEEHM-VEGEVAYNEDLMRELRRMKEENVGPGDKYAKETRRYNPEFAA 161

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig10707.661.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig10707.661.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D8LDI5_ECTSI	2.340e-60	74.47	MscS Mechanosensitive ion channel n=1 Tax=Ectocarp...	[more]
A0A6H5KGP0_9PHAE	4.860e-59	75.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835YR84_9STRA	3.860e-12	57.58	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 27..178
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..26
None	No IPR available	TMHMM	TMhelix		coord: 10..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig10707	contig	L-elsbetiae_contig10707:457..5772 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig10707.661.1	mRNA_L-elsbetiae_contig10707.661.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig10707 457..5772 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig10707.661.1 ID=prot_L-elsbetiae_contig10707.661.1|Name=mRNA_L-elsbetiae_contig10707.661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
MRYSDLSPIGFTFSSVIIFIGMRSSLRIMGKQRKRVKSEAAKFDVERDEF
MNVEGEAEFDVDIMKELRDMKEKMAGPGDTYAKDTRAYNPEFAAAAGDED
EYDKKIQEALKGTGKGGKTNKGETRKVFTKDEPTNVDSGSSAKKDKSADA
DGGGGGGGGAAGGIGMTKADEKADAAAQ