mRNA_L-elsbetiae_contig10707.661.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10707.661.1
Unique NamemRNA_L-elsbetiae_contig10707.661.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10707.661.1 vs. uniprot
Match: D8LDI5_ECTSI (MscS Mechanosensitive ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDI5_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 2.340e-60
Identity = 105/141 (74.47%), Postives = 123/141 (87.23%), Query Frame = 1 
Query:   13 DLSPIGFTFSSVIIFIGMRSSLRIMGKQRKRVKSEAAKFDVERDEFMNVEGEAEFDVDIMKELRDMKEKMAGPGDTYAKDTRAYNPEFAAAAGDEDEYDKKIQEALKGTGKGGKTNKGETRKVFTKDEPTNVDSGSSAKKD 435
            DLSP+G TFS+ +   GMR+SLR M  QRKRVK E+AKFD E+DEFM+V+GEAEFDVDIMKELRDMKEKMAGPGD+YAKDTRAYNP+FAAAAGDE+EYDKKI+EAL+GTGK GK+NKGETRKVFT +EPT   + +S  +D
Sbjct:  143 DLSPLGLTFSAFLFVTGMRASLRSMSNQRKRVKVESAKFDAEKDEFMDVDGEAEFDVDIMKELRDMKEKMAGPGDSYAKDTRAYNPDFAAAAGDEEEYDKKIKEALEGTGKAGKSNKGETRKVFT-NEPTTGPTAASGDQD 282
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BLAST of mRNA_L-elsbetiae_contig10707.661.1 vs. uniprot
Match: A0A6H5KGP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP0_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 4.860e-59
Identity = 106/141 (75.18%), Postives = 122/141 (86.52%), Query Frame = 1 
Query:   13 DLSPIGFTFSSVIIFIGMRSSLRIMGKQRKRVKSEAAKFDVERDEFMNVEGEAEFDVDIMKELRDMKEKMAGPGDTYAKDTRAYNPEFAAAAGDEDEYDKKIQEALKGTGKGGKTNKGETRKVFTKDEPTNVDSGSSAKKD 435
            DLSP+G TFS+ +   GMR+SLR M  QRKRVK E+AKFD E+DEFMNV+GEAEFDVDIMKELRDMKEKMAGPGD YAKDTRAYNP+FAAAAGDE+EYDKKI+EAL+GTGK GK+NKGETRKVFT +EPT   + +S  +D
Sbjct:  310 DLSPLGLTFSAFLFVTGMRASLRSMSNQRKRVKVESAKFDAEKDEFMNVDGEAEFDVDIMKELRDMKEKMAGPGDKYAKDTRAYNPDFAAAAGDEEEYDKKIREALEGTGKAGKSNKGETRKVFT-NEPTTGPTAASGDED 449
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BLAST of mRNA_L-elsbetiae_contig10707.661.1 vs. uniprot
Match: A0A835YR84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR84_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.860e-12
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   85 MGKQRKRVKSEAAKFDVERDEFMNVEGEAEFDVDIMKELRDMKEKMAGPGDTYAKDTRAYNPEFAA 282
            M  QRKR++ E  KF    +E M VEGE  ++ D+M+ELR MKE+  GPGD YAK+TR YNPEFAA
Sbjct:   97 MNAQRKRIREENTKFQQNAEEHM-VEGEVAYNEDLMRELRRMKEENVGPGDKYAKETRRYNPEFAA 161
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10707.661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDI5_ECTSI2.340e-6074.47MscS Mechanosensitive ion channel n=1 Tax=Ectocarp... [more]
A0A6H5KGP0_9PHAE4.860e-5975.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YR84_9STRA3.860e-1257.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10707contigL-elsbetiae_contig10707:457..5772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMscS Mechanosensitive ion channel
Ec32 orthologEc-15_000470.1
Exons4
Model size534
Cds size534
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10707.661.1prot_L-elsbetiae_contig10707.661.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10707 457..5772 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815289.4836106-CDS-L-elsbetiae_contig10707:456..5611622815289.4836106-CDS-L-elsbetiae_contig10707:456..561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10707 457..561 +
1691682819.6512008-CDS-L-elsbetiae_contig10707:456..5611691682819.6512008-CDS-L-elsbetiae_contig10707:456..561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10707 457..561 +
1622815289.4940217-CDS-L-elsbetiae_contig10707:1385..14831622815289.4940217-CDS-L-elsbetiae_contig10707:1385..1483Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10707 1386..1483 +
1691682819.6615357-CDS-L-elsbetiae_contig10707:1385..14831691682819.6615357-CDS-L-elsbetiae_contig10707:1385..1483Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10707 1386..1483 +
1622815289.5067427-CDS-L-elsbetiae_contig10707:2198..23191622815289.5067427-CDS-L-elsbetiae_contig10707:2198..2319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10707 2199..2319 +
1691682819.671085-CDS-L-elsbetiae_contig10707:2198..23191691682819.671085-CDS-L-elsbetiae_contig10707:2198..2319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10707 2199..2319 +
1622815289.518504-CDS-L-elsbetiae_contig10707:5562..57721622815289.518504-CDS-L-elsbetiae_contig10707:5562..5772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10707 5563..5772 +
1691682819.6806712-CDS-L-elsbetiae_contig10707:5562..57721691682819.6806712-CDS-L-elsbetiae_contig10707:5562..5772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10707 5563..5772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10707.661.1

>prot_L-elsbetiae_contig10707.661.1 ID=prot_L-elsbetiae_contig10707.661.1|Name=mRNA_L-elsbetiae_contig10707.661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
MRYSDLSPIGFTFSSVIIFIGMRSSLRIMGKQRKRVKSEAAKFDVERDEF
MNVEGEAEFDVDIMKELRDMKEKMAGPGDTYAKDTRAYNPEFAAAAGDED
EYDKKIQEALKGTGKGGKTNKGETRKVFTKDEPTNVDSGSSAKKDKSADA
DGGGGGGGGAAGGIGMTKADEKADAAAQ
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mRNA from alignment at L-elsbetiae_contig10707:457..5772+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10707.661.1 ID=mRNA_L-elsbetiae_contig10707.661.1|Name=mRNA_L-elsbetiae_contig10707.661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5316bp|location=Sequence derived from alignment at L-elsbetiae_contig10707:457..5772+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGATACAGCGACCTCTCCCCCATAGGGTTCACGTTCAGCAGCGTCAT
CATCTTTATAGGCATGCGGAGCAGTCTCCGGATCATGGGCAAGCAACGGA
AGCGGGTGAGCAAGAAGTACGTACATACACACATACATACATACATACAT
ACATACATACGAAGGTATGTAGTTCATACCCCGTCGCCACCGGTGGTCTG
GTTGGTAGCTTCGCGACCTCCTTTGAAGCAGGTCATGGGTTCGAGCCCCG
GCGAAGCGATATTGTTTTCTCACATTCGTTCCTGGACAACGTGAAAGCGA
TTTCGTTAAGAGTACATAATACTTCGACTTCATTGTTGACGAGGGTGGGG
AGTGCTGAACCCTGCTCGCGATAGAAACATCTAAGGCAGGCACCGCAGGA
GGGGGTCCACCCCCCCCTCCCCCCCCCCTCCTGTGTAACCCCGGTTGGGT
CGTCTAGCCAGTCGTAGTGGAGGAAGGGGGCCAGTGGGGCAGACGACGAA
TAAGCCAATAAATAATGGGAGGAAACAAAAAAGACATATGTATACCATTA
CAAGAGCGCTTCGGACAGCTCTTGATGAGATGTTTCCAACGCCGGGCCCT
TTTCGGGGCTGACCCTCTCCTCGCTGTGGAGTAGTCGAGGTTTGGAAATC
GGTCCAGGGAGGGTGTTATCTTGTGTCGTATGCGGTAGCGAGTTGCCTGC
CTGTTCGAGGACGCGGCGTGCACTCGTGTGTGACACACTCAGGTCAACGC
CGCGGCGTCTCAAAAGCCCCCCACACGGAAGCGCCTTAATATAATAATGC
CAGCACTAACTAACCGCATGCTCATGTTCGACGTGTTCGTGTTTCGTGTT
CATGCTGCGTATGTACACATGCTATGTAACTAGAGTAAACTTGCAAGACA
TGTGTTACCGGTCTGCACACATACTGTAGGTCAAATCCGAGGCGGCTAAG
TTCGACGTGGAGCGGGACGAGTTCATGAATGTGGAGGGGGAGGCGGAATT
CGATGTCGACATCATGAAGGAGCTCAGGTGTGTACAGTTTATGTCTACCG
TGGGGGGCACAAGATACCACACACACACACCCTGGGCATATTTTCAAAGC
TCGAATCCCCCCCAGCAAGAGAAGTGCCAGTCCCGAAACGAGGTGGCCGT
TGGAGAGATCTAGTCGAGGGCTCTCGGAAAATGTGTCGTTTGGTGCTGGC
GCCTTCTTCGTTACGGAGTAATCGAGCTCTTAAACATCGGTCCAGGGGGC
GTGGTATCTTGTGTCAACTACGGCAGTCACGCCTTTCGCCTGTATCCTTG
GTCTTCGTGCGCCATGAGCGAGTTCAGCCTTTTATATGTAGCCTGGAAGT
GCAATTGTTTTTTTCTTTTTTTTCTTTACATTTTTTTCAGTGCTTCGATG
GACTCCTTGTCGCGAGGACATCTTGCCAGAGTACCGTAGGTGACATAAGA
TAAGACACCCCCTGGACCGATATTGAAAGCTTGTCACTCCGCAACGAATA
CGATTCTAACCACAAACGCCACATTTTCGGACAGCTCTCGACGAGATCTT
TCCAACGCCGCCCCTTTTCGGGACTGGCGCTCTGCTTGCTGTGGAGGACT
TGAGCTTTGAAAATCGGTCCCAGGGGGTGTCTTATCTTATGTCACCTACG
GTGGTATCCATACGCACCTGCCCTCGTTTTGATTGGCCTGTTGGCTGTTG
TTGTCACGTTGTTACGGTCGTATTTCCTAACCCTAACCCTAGGGACATGA
AGGAGAAGATGGCGGGGCCGGGGGACACGTACGCGAAGGACACCAGGGCC
TACAACCCGGAGTTCGCCGCAGCTGCCGGTGACGAGGACGAGTACGACAA
GAAGATTCAAGAGGTGGGTACCCGTATTTTTACTATGCGGAGCCCCCTCA
AACAGAGTTTACGGTAGGTGACATTAGATAAGACACCCCCTAGACCGACG
GGTACCCGGGTACCCGGAGTTTTACTATGTGGGGCCCCCTCAAACAGAGT
CTACCGTAGGTTACCCTGAGTTTTACTATGTGGGGCCCCCTCAAACAGAG
TCTACCGTAGGTGACATAAGATAAGACACCCCCTGGACCGGCTTTCAAAG
CTCGGGTACTCCGCAACGAGTATGATCCTAATATATAGGTACCAAACGGC
ACATTCGCGGACAGCTCTTGATGAGATATTTCCAACGCCGCCCTTTTCAG
GACCGGCGCTCTTCTCGCTGTCGAGCATTTGAGCTTTGACAATCGGTCCA
GGGGGTGTGTTATCTTGTGTCGTGTACGGTAGACGCAGCGGTTGTTTATC
GCTGGGTCTAGGCTTCGTATCGTCTGCCAAAAGTTGAAAGTTGCCTCTTT
CATGAGGTTGAATGCATATGTACGTGTGCATTTTAGTGGAATACTTTGAG
TCTGCGTGAGATCTAGGAAGAGTCATGAAAACTGCCATGGTTGACGTGCA
AAAGGGGTTCGCAATTGAGAGGCTTGGTAAAATTGTTCTCCCGCACAAGT
CAGTTCATTTTTTTTACAGCGGTCGGGCTGCACAACCTGGGCTAATTGAT
GTTTCCTTTACAGAAAGGAGTTTTTCACCTGAAAATGTTGTAACGAATAC
AGGGGGTGACGTGTGGGCTAGACGGGGGGTTACGTTCTGGCCAGTTCCCA
GCCCTGGGTCATCCCCTCCCAAAAACACCACACCGATTAGTTGAAAAGAC
ACAAATACACGCACAATAATATTATAAAAAAGCGGAGATGAGGAAAACGG
AACGGTTCCCATCTCCCTCATGCACTAAAGAGTCAAAACATGGGAGAGCT
CTGTTCAGTCTCTCACTTCCTTTTTATTTCCTCTCACACTTAAGCGAATC
CAGCAAATTGTAGGTACGGTAAGGTAAGGAATACCGTAGGTGACACAAGA
TACCACACCCCCTGGACAGATTTTCAAAGCTCGATTCCTCCCCATCGAGA
AGAATGACAGTGTCGAAAGGGGTGGCGTTGGAAAGATCTAGGCGAGGGCT
GCCTGAAAATGTGCTGTTTGGTGCTGGCAGCTTCTTCGTTACGAAGTAAT
CGGGCTCTAAAATTCAGCCCAGGGGGTGTGGTATCTTGTGTCACCTACAT
ACGGTAGTTGCCCAACCTTGCTGGAAAAAAATATGGCACGCCATTGATCC
GTAGCACTACTGTTGTGTGCAGGCAGGGCAGCCTTCCCCGTGTTTTCACC
TACCCGCTTTGACACCATGTAGTTTGTCGCCACACGTATTTTTTTCTTTT
TCTTCGATCGATCATTGGCTTATTCGTCGTCTGCCCCACTGGCCCCCCTT
CCTCCACTACGACTAGCTAGACGACCCAACCGGGGTCACAGAGGAGGGGG
GGGGGGGTGGACTCCCTCCTGCGGTGCCTGCCTGTCAAGTTTTTATCGCG
AGCAGGGTTCAGCACTCTCCACCCTCGTCAACACCATAGTTAAGCGCGGC
AGCTTTCCACATTTAAAGGACTGCCGTGTGTTCGCATTTGAAGCACCAAC
CATCGCCTGTGCGGTTTTCAACATACGTAGGCGCTTGCATATACACACGT
GGGTGTACCATGGACGTGGCTTTTTTTCGCGTGTCCTGTGCCTTTGATAC
ATAAACTGCTGTCACGACGTCGAGGCTGTCGTCATCACCGGACAAAGGAA
CGGCATCTTCAAAAGTAAAAGAAGAAAAAAAGACAAAAAGGAAGAAACAA
AAATAAAGACCGGTTTTTATGGGAGCACGAGGTTTATTTTGAGAAAAGTT
GTTTTTTTCGTATTGTTGGGCACTTTTCATCGCCAAGAGCTCCGAATCAA
TTGAAGCTCTCGTCCAGAGGTTTCTAGATCTACTGCCCATTCTGGCAGAC
TTCACGTTCGATTTTTCGCCGAGGAGCAAGATATGGCAACATTGTGTGTG
CCAACGTTGCAACAAAATAGCCTGTTCGTGCAAAAGTTTGCAAACTTTTC
GCCCGAAAATGCTTTTCTTGCGAAAAGTTGTCAAAAAGGAATAAATAAAA
AACAAAAAAGAAAAAAAACAAAAATTATAACAAATTCTTGAGTTTCGTTC
TATAACACACCCGATCCTCCTCTTTGGCCGAGCAACGCGCCGAGGCCTTC
CACCCTCATGACGTCACGCTGACGCCGTCGCCGCGTAGTTTTTGTTTTTT
GCCGTTTCCCCGGTTTTTTGTGGTTGTATTTCTCCTCACCCCGGTGGTCT
AGTGGTTTAACCTCGAACCCACTACATAGCAGCAAAGTCTGGAGTTCAAT
CCCAAGCAGAAGTGTTTCTTTTGCGACTTTGCAGGTGAAAGCGATAAAAG
CTGAAAAGCTCGTGAGTACCACACTTCGACGTAATCACGTTGACGAGGGA
AATGGACAGCTGAACCCTTCTCGCGATAAAACCCAAGGCAGGAACCGCAG
GAGGAAGGTGGGGCAAAAATAGAAAATAAAAAAGAAGAAAATGCCCCAGT
GTTCACCTCCTCCTGTGTGACCCCGGTTCTAGTTGTACATACAAATGCAC
TGCAGAGTGTAGTACCTCTAAGTACACCGCAAGGTGTAGTACATGTCTCC
ACTTTGGGAGACTGTCGCCAAAATAAATGGGAAGGACACACACACACACA
CACACATTTCTCCTCATGGGCTTCCTTCCGTGTTCGATGTGTGCTGTGTA
TTATGGCGCGGCGCCGTGTATGTACCACGCACTACATACATTTGTTTTTG
TGTTGGCGAGACGCAAGACCCCTCGGGAACCAGCTTACTTGTACGTGGTG
CCGCCGGCCGCGTATGTACCATATATATATATGCGAAGTATATATTTATT
TTTTCTTCCGCAGCGTCGAGTGTGCCTTGTTTTTGTGACCACGGGCCCCC
AATGTGAGAAACAACAACAACATTAACAATATACACACGTGACCGCACGT
CAGCACACACCGTTCGTTGTGTGATGCAGCTCATGGTGAAGTGCTCACTC
AGCACAGACAGGTAGGTGCTGCATAATAACATGGTACAACTGATTTGGGT
GGTAGACCTCTCTGTTTAGTTGTATTGTACTTCAAGTATAGAGCATGTAG
AGATCGGATGATTGATTGATGCGTGATGCACATGTGAATGCATGCGATGA
CACCAGGCGCTGAAGGGCACGGGCAAGGGTGGAAAGACCAACAAGGGCGA
GACGAGAAAAGTCTTCACCAAGGACGAACCCACCAACGTCGATTCCGGCT
CCTCGGCCAAGAAGGACAAGTCGGCAGACGCCGACGGTGGCGGTGGCGGT
GGCGGTGGCGCCGCTGGTGGGATAGGGATGACCAAGGCGGACGAGAAGGC
CGACGCGGCTGCTCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10707:457..5772+

>mRNA_L-elsbetiae_contig10707.661.1 ID=mRNA_L-elsbetiae_contig10707.661.1|Name=mRNA_L-elsbetiae_contig10707.661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1068bp|location=Sequence derived from alignment at L-elsbetiae_contig10707:457..5772+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGATACAGCGACCTCTCCCCCATAGGGTTCACGTTCAGCAGCGTCAT
CATCTTTATAGGCATGCGGAGCAGTCTCCGGATCATGGGCAAGCAACGGA
AGCGGATGCGATACAGCGACCTCTCCCCCATAGGGTTCACGTTCAGCAGC
GTCATCATCTTTATAGGCATGCGGAGCAGTCTCCGGATCATGGGCAAGCA
ACGGAAGCGGGTCAAATCCGAGGCGGCTAAGTTCGACGTGGAGCGGGACG
AGTTCATGAATGTGGAGGGGGAGGCGGAATTCGATGTCGACATCATGAAG
GAGCTCAGGTCAAATCCGAGGCGGCTAAGTTCGACGTGGAGCGGGACGAG
TTCATGAATGTGGAGGGGGAGGCGGAATTCGATGTCGACATCATGAAGGA
GCTCAGGGACATGAAGGAGAAGATGGCGGGGCCGGGGGACACGTACGCGA
AGGACACCAGGGCCTACAACCCGGAGTTCGCCGCAGCTGCCGGTGACGAG
GACGAGTACGACAAGAAGATTCAAGAGGGACATGAAGGAGAAGATGGCGG
GGCCGGGGGACACGTACGCGAAGGACACCAGGGCCTACAACCCGGAGTTC
GCCGCAGCTGCCGGTGACGAGGACGAGTACGACAAGAAGATTCAAGAGGC
GCTGAAGGGCACGGGCAAGGGTGGAAAGACCAACAAGGGCGAGACGAGAA
AAGTCTTCACCAAGGACGAACCCACCAACGTCGATTCCGGCTCCTCGGCC
AAGAAGGACAAGTCGGCAGACGCCGACGGTGGCGGTGGCGGTGGCGGTGG
CGCCGCTGGTGGGATAGGGATGACCAAGGCGGACGAGAAGGCCGACGCGG
CTGCTCAGGCGCTGAAGGGCACGGGCAAGGGTGGAAAGACCAACAAGGGC
GAGACGAGAAAAGTCTTCACCAAGGACGAACCCACCAACGTCGATTCCGG
CTCCTCGGCCAAGAAGGACAAGTCGGCAGACGCCGACGGTGGCGGTGGCG
GTGGCGGTGGCGCCGCTGGTGGGATAGGGATGACCAAGGCGGACGAGAAG
GCCGACGCGGCTGCTCAG
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