mRNA_L-elsbetiae_contig213.6507.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig213.6507.1
Unique NamemRNA_L-elsbetiae_contig213.6507.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig213.6507.1 vs. uniprot
Match: D7FQT5_ECTSI (SRP101, alpha subunit of the signal recognition particle receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT5_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 1.560e-86
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 2 
Query:  413 GYARDSSAVAREAVKHAEEEGYDCVLIDTAGRMQNNEPLMRALSKLINENEPELVLFVGEALVGNDGVNQLQMFNQALANNSPAGRFHQIDGVVLTKFDTIDTKVGAALSMCYKTGQPILFVGTGQKYTHLRKLNVNYVIKALFG 847
            GYARDSSAVAREAVKHA EEGYDCVLIDTAGRMQNNEPLMRALSKLINENEPELVLFVGEALVGNDGVNQLQMFNQALANNSPAGR+HQIDGVVLTKFDTIDTKVGAALSMCYKTGQPILFVGTGQKYTHLRKLNVNYVIKALFG
Sbjct:  445 GYARDSSAVAREAVKHAAEEGYDCVLIDTAGRMQNNEPLMRALSKLINENEPELVLFVGEALVGNDGVNQLQMFNQALANNSPAGRYHQIDGVVLTKFDTIDTKVGAALSMCYKTGQPILFVGTGQKYTHLRKLNVNYVIKALFG 589
[Close]
BLAST of mRNA_L-elsbetiae_contig213.6507.1 vs. uniprot
Match: K8Z840_NANGC (Signal recognition particle receptor subunit alpha n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z840_NANGC)

HSP 1 Score: 224 bits (571), Expect = 3.470e-65
Identity = 104/144 (72.22%), Postives = 129/144 (89.58%), Query Frame = 2 
Query:  413 GYARDSSAVAREAVKHAEEEGYDCVLIDTAGRMQNNEPLMRALSKLINENEPELVLFVGEALVGNDGVNQLQMFNQALANNSPAGRFHQIDGVVLTKFDTIDTKVGAALSMCYKTGQPILFVGTGQKYTHLRKLNVNYVIKALF 844
            GY +D +AVA+ A+K A ++G+D VL+DTAGRMQN EPLMRAL+KL+++N+P+LV+FVGEALVGNDG++QL +FNQALAN SP G+ HQIDG++LTKFDT+D KVGAALSMCYKTGQPILFVGTGQKYTHL+KLNVN ++  LF
Sbjct:  231 GYHKDPAAVAKAAIKEATDKGHDVVLVDTAGRMQNKEPLMRALAKLVSDNQPDLVVFVGEALVGNDGIDQLTVFNQALANYSPPGKTHQIDGIILTKFDTVDEKVGAALSMCYKTGQPILFVGTGQKYTHLKKLNVNLILNCLF 374
[Close]
BLAST of mRNA_L-elsbetiae_contig213.6507.1 vs. uniprot
Match: A0A4D9D5H8_9STRA (SRP54 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5H8_9STRA)

HSP 1 Score: 224 bits (571), Expect = 2.130e-62
Identity = 104/144 (72.22%), Postives = 129/144 (89.58%), Query Frame = 2 
Query:  413 GYARDSSAVAREAVKHAEEEGYDCVLIDTAGRMQNNEPLMRALSKLINENEPELVLFVGEALVGNDGVNQLQMFNQALANNSPAGRFHQIDGVVLTKFDTIDTKVGAALSMCYKTGQPILFVGTGQKYTHLRKLNVNYVIKALF 844
            GY +D +AVA+ A+K A ++G+D VL+DTAGRMQN EPLMRAL+KL+++N+P+LV+FVGEALVGNDG++QL +FNQALAN SP G+ HQIDG++LTKFDT+D KVGAALSMCYKTGQPILFVGTGQKYTHL+KLNVN ++  LF
Sbjct:  511 GYHKDPAAVAKAAIKEATDKGHDVVLVDTAGRMQNKEPLMRALAKLVSDNQPDLVVFVGEALVGNDGIDQLTVFNQALANYSPPGKTHQIDGIILTKFDTVDEKVGAALSMCYKTGQPILFVGTGQKYTHLKKLNVNLILNCLF 654
[Close]
BLAST of mRNA_L-elsbetiae_contig213.6507.1 vs. uniprot
Match: A0A7S1U981_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U981_9STRA)

HSP 1 Score: 215 bits (548), Expect = 2.680e-61
Identity = 104/145 (71.72%), Postives = 124/145 (85.52%), Query Frame = 2 
Query:  413 GYARDSSAVAREAVKHAEEEGYDCVLIDTAGRMQNNEPLMRALSKLINENEPELVLFVGEALVGNDGVNQLQMFNQALANNSPAGRFHQIDGVVLTKFDTIDTKVGAALSMCYKTGQPILFVGTGQKYTHLRKLNVNYVIKALFG 847
            GYARD S+VA  A  HA E GYD +L+DTAGRMQNNEPLM+ALSKLI++N P+L LFVGEALVGNDG++QL MFN++LA+NSP G  H++DG++LTKFDTID KVGAALSM YKTG+PILFVGTGQKYTHL+ L+V  VI +LF 
Sbjct:  274 GYARDPSSVAAAAKVHARENGYDVLLVDTAGRMQNNEPLMKALSKLISDNRPDLTLFVGEALVGNDGIDQLMMFNESLADNSPPGTHHEVDGIMLTKFDTIDDKVGAALSMSYKTGKPILFVGTGQKYTHLKHLSVPAVINSLFS 418
[Close]
BLAST of mRNA_L-elsbetiae_contig213.6507.1 vs. uniprot
Match: A0A0P1B7H3_PLAHL (Signal recognition particle receptor subunit alpha n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B7H3_PLAHL)

HSP 1 Score: 215 bits (548), Expect = 1.630e-59
Identity = 104/143 (72.73%), Postives = 127/143 (88.81%), Query Frame = 2 
Query:  413 GYARDSSAVAREAVKHAEEEGYDCVLIDTAGRMQNNEPLMRALSKLINENEPELVLFVGEALVGNDGVNQLQMFNQALANNSPAGRFHQIDGVVLTKFDTIDTKVGAALSMCYKTGQPILFVGTGQKYTHLRKLNVNYVIKAL 841
            GYA+D ++VA+EAVK+  E GYDCVLIDTAGRMQNNEPLMRAL+KL+++NEP+LVLFVGEALVGNDG++QL MF++ALA+ S     H+IDG+V+TKFDTID KVGAA+SM YKTGQPI+FVGTGQKYTHL+KLNV  V++ L
Sbjct:  458 GYAKDPASVAKEAVKYGTENGYDCVLIDTAGRMQNNEPLMRALAKLVSKNEPDLVLFVGEALVGNDGIDQLSMFDRALADYSDRREPHRIDGIVITKFDTIDDKVGAAVSMVYKTGQPIMFVGTGQKYTHLKKLNVRTVLRHL 600
[Close]
BLAST of mRNA_L-elsbetiae_contig213.6507.1 vs. uniprot
Match: A0A7R9U3P7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3P7_9STRA)

HSP 1 Score: 213 bits (542), Expect = 2.890e-59
Identity = 104/152 (68.42%), Postives = 124/152 (81.58%), Query Frame = 2 
Query:  392 QFNKIHTGYARDSSAVAREAVKHAEEEGYDCVLIDTAGRMQNNEPLMRALSKLINENEPELVLFVGEALVGNDGVNQLQMFNQALANNSPAGRFHQIDGVVLTKFDTIDTKVGAALSMCYKTGQPILFVGTGQKYTHLRKLNVNYVIKALFG 847
            Q +    GY+RD S+VA  A  HA E  YD +L+DTAGRMQNNEPLM+ALS+LI++N PEL +FVGEALVGNDG++QL MFNQALANN+P G F Q+DG++LTKFDTID KVGAALSM YKT +PILFVGTGQKYTHL+ L+V  VI +LF 
Sbjct:  380 QVDLFERGYSRDPSSVASAAKAHARENKYDVLLVDTAGRMQNNEPLMKALSQLISDNTPELTVFVGEALVGNDGIDQLMMFNQALANNAPPGTFQQVDGIILTKFDTIDDKVGAALSMSYKTSKPILFVGTGQKYTHLKHLSVPAVINSLFA 531
[Close]
BLAST of mRNA_L-elsbetiae_contig213.6507.1 vs. uniprot
Match: H3G7F3_PHYRM (SRP54 domain-containing protein n=23 Tax=Phytophthora TaxID=4783 RepID=H3G7F3_PHYRM)

HSP 1 Score: 214 bits (546), Expect = 3.170e-59
Identity = 104/143 (72.73%), Postives = 126/143 (88.11%), Query Frame = 2 
Query:  413 GYARDSSAVAREAVKHAEEEGYDCVLIDTAGRMQNNEPLMRALSKLINENEPELVLFVGEALVGNDGVNQLQMFNQALANNSPAGRFHQIDGVVLTKFDTIDTKVGAALSMCYKTGQPILFVGTGQKYTHLRKLNVNYVIKAL 841
            GYA+D ++VA+EAVK+  E GYDCVLIDTAGRMQNNEPLMRAL+KL++ NEP+LVLFVGEALVGNDG++QL MF++ALA+ S     H+IDG+V+TKFDTID KVGAA+SM YKTGQPI+FVGTGQKYTHL+KLNV  V++ L
Sbjct:  458 GYAKDPASVAKEAVKYGTENGYDCVLIDTAGRMQNNEPLMRALAKLVSNNEPDLVLFVGEALVGNDGIDQLAMFDRALADYSDRREPHRIDGIVITKFDTIDDKVGAAVSMVYKTGQPIMFVGTGQKYTHLKKLNVRTVLRHL 600
[Close]
BLAST of mRNA_L-elsbetiae_contig213.6507.1 vs. uniprot
Match: A0A5D6Y7Z3_9STRA (SRP54 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7Z3_9STRA)

HSP 1 Score: 213 bits (543), Expect = 9.920e-59
Identity = 104/143 (72.73%), Postives = 126/143 (88.11%), Query Frame = 2 
Query:  413 GYARDSSAVAREAVKHAEEEGYDCVLIDTAGRMQNNEPLMRALSKLINENEPELVLFVGEALVGNDGVNQLQMFNQALANNSPAGRFHQIDGVVLTKFDTIDTKVGAALSMCYKTGQPILFVGTGQKYTHLRKLNVNYVIKAL 841
            GYA+D +AVA+EAVK+  E G+DCVLIDTAGRMQNNEPLMRAL+KL++ NEP+LVLFVGEALVGNDG++QL MF++ALA+ S     H+IDG+V+TKFDTID KVGAA+SM YKTGQPI+FVGTGQKYTHL+KLNV  V++ L
Sbjct:  466 GYAKDPAAVAKEAVKYGTENGFDCVLIDTAGRMQNNEPLMRALAKLVSLNEPDLVLFVGEALVGNDGIDQLSMFDRALADYSDRREPHRIDGIVITKFDTIDDKVGAAVSMVYKTGQPIMFVGTGQKYTHLKKLNVRTVLRHL 608
[Close]
BLAST of mRNA_L-elsbetiae_contig213.6507.1 vs. uniprot
Match: A0A7S3Y919_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y919_HETAK)

HSP 1 Score: 205 bits (522), Expect = 1.050e-58
Identity = 100/146 (68.49%), Postives = 126/146 (86.30%), Query Frame = 2 
Query:  413 GYARDSSAVAREAVKHAEEEGYDCVLIDTAGRMQNNEPLMRALSKLINENEPELVLFVGEALVGNDGVNQLQMFNQALANNSPAGRF-HQIDGVVLTKFDTIDTKVGAALSMCYKTGQPILFVGTGQKYTHLRKLNVNYVIKALFG 847
            GYA+D +AVA  A++HA E+G+D VLIDTAGRMQNN PLMRAL+KL+ + +P+ VLFVGEALVGNDG++QL+MF++ALA  +P GR   ++DG+VLTKFDTIDTKVGAALSM Y+TGQP++FVGTGQKYTHLR+LN   ++ ALFG
Sbjct:  168 GYAKDPAAVAVAALEHAREQGFDAVLIDTAGRMQNNAPLMRALAKLVGDAQPDRVLFVGEALVGNDGIDQLRMFDEALAAFAPPGRPPRRVDGIVLTKFDTIDTKVGAALSMTYQTGQPVVFVGTGQKYTHLRRLNAGAIVDALFG 313
[Close]
BLAST of mRNA_L-elsbetiae_contig213.6507.1 vs. uniprot
Match: A0A3M6VSC8_9STRA (SRP54 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSC8_9STRA)

HSP 1 Score: 212 bits (539), Expect = 3.100e-58
Identity = 101/143 (70.63%), Postives = 125/143 (87.41%), Query Frame = 2 
Query:  413 GYARDSSAVAREAVKHAEEEGYDCVLIDTAGRMQNNEPLMRALSKLINENEPELVLFVGEALVGNDGVNQLQMFNQALANNSPAGRFHQIDGVVLTKFDTIDTKVGAALSMCYKTGQPILFVGTGQKYTHLRKLNVNYVIKAL 841
            GYA+D ++VA+EA+K+  + GYDCVLIDTAGRMQNNEPLMRAL+KL++ NEP+LVLFVGEALVGNDG++QL MF++ALA+ S     H+IDG+V+TKFDTID KVGAA+SM YKTGQPI+FVGTGQKYTHL+KLN   V++ L
Sbjct:  456 GYAKDPASVAKEAIKYGADHGYDCVLIDTAGRMQNNEPLMRALAKLVSNNEPDLVLFVGEALVGNDGIDQLSMFDRALADYSDRREPHRIDGIVITKFDTIDDKVGAAVSMVYKTGQPIMFVGTGQKYTHLKKLNARTVLRHL 598
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig213.6507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQT5_ECTSI1.560e-8698.62SRP101, alpha subunit of the signal recognition pa... [more]
K8Z840_NANGC3.470e-6572.22Signal recognition particle receptor subunit alpha... [more]
A0A4D9D5H8_9STRA2.130e-6272.22SRP54 domain-containing protein n=2 Tax=Monodopsid... [more]
A0A7S1U981_9STRA2.680e-6171.72Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0P1B7H3_PLAHL1.630e-5972.73Signal recognition particle receptor subunit alpha... [more]
A0A7R9U3P7_9STRA2.890e-5968.42Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
H3G7F3_PHYRM3.170e-5972.73SRP54 domain-containing protein n=23 Tax=Phytophth... [more]
A0A5D6Y7Z3_9STRA9.920e-5972.73SRP54 domain-containing protein n=1 Tax=Pythium br... [more]
A0A7S3Y919_HETAK1.050e-5868.49Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3M6VSC8_9STRA3.100e-5870.63SRP54 domain-containing protein n=2 Tax=Peronospor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig213contigL-elsbetiae_contig213:4577..8312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score289.3
Seed ortholog evalue1.1e-75
Seed eggNOG ortholog2880.D7FQT5
Preferred nameSRPR
KEGG koko:K06640,ko:K13431,ko:K21989
KEGG TC3.A.5.8
KEGG Pathwayko03060,ko03460,ko04110,ko04115,ko04214,ko04218,ko05165,ko05166,map03060,map03460,map04110,map04115,map04214,map04218,map05165,map05166
KEGG ModuleM00691
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000902,GO:0000904,GO:0001882,GO:0001883,GO:0002791,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005047,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005785,GO:0005789,GO:0005791,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006810,GO:0006886,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0008104,GO:0008150,GO:0009653,GO:0009987,GO:0010033,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022008,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030867,GO:0030968,GO:0031090,GO:0031175,GO:0031984,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034620,GO:0034976,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0036498,GO:0042175,GO:0042221,GO:0042886,GO:0043021,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0048468,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0061564,GO:0065007,GO:0070201,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090087,GO:0090150,GO:0097159,GO:0097367,GO:0098588,GO:0098796,GO:0098827,GO:0120036,GO:0120039,GO:1901265,GO:1901363,GO:1903530
EggNOG free text desc.signal recognition particle binding
EggNOG OGsCOG0552@1,KOG0781@2759
EC2.7.11.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko02044,ko03400
Ec32 ortholog descriptionSignal recognition particle, SRP54 subunit, helical bundle
Ec32 orthologEc-16_000650.1
Exons4
Model size1469
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig213.6507.1prot_L-elsbetiae_contig213.6507.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig213 4953..7693 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815872.3253922-UTR-L-elsbetiae_contig213:4576..49521622815872.3253922-UTR-L-elsbetiae_contig213:4576..4952Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig213 4577..4952 +
1691683159.2801774-UTR-L-elsbetiae_contig213:4576..49521691683159.2801774-UTR-L-elsbetiae_contig213:4576..4952Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig213 4577..4952 +
1622815872.3797824-UTR-L-elsbetiae_contig213:7693..83121622815872.3797824-UTR-L-elsbetiae_contig213:7693..8312Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig213 7694..8312 +
1691683159.3294551-UTR-L-elsbetiae_contig213:7693..83121691683159.3294551-UTR-L-elsbetiae_contig213:7693..8312Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig213 7694..8312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815872.336902-CDS-L-elsbetiae_contig213:4952..50901622815872.336902-CDS-L-elsbetiae_contig213:4952..5090Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig213 4953..5090 +
1691683159.2920113-CDS-L-elsbetiae_contig213:4952..50901691683159.2920113-CDS-L-elsbetiae_contig213:4952..5090Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig213 4953..5090 +
1622815872.3473418-CDS-L-elsbetiae_contig213:5688..58141622815872.3473418-CDS-L-elsbetiae_contig213:5688..5814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig213 5689..5814 +
1691683159.3024387-CDS-L-elsbetiae_contig213:5688..58141691683159.3024387-CDS-L-elsbetiae_contig213:5688..5814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig213 5689..5814 +
1622815872.3580437-CDS-L-elsbetiae_contig213:7221..73051622815872.3580437-CDS-L-elsbetiae_contig213:7221..7305Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig213 7222..7305 +
1691683159.311276-CDS-L-elsbetiae_contig213:7221..73051691683159.311276-CDS-L-elsbetiae_contig213:7221..7305Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig213 7222..7305 +
1622815872.3687136-CDS-L-elsbetiae_contig213:7567..76931622815872.3687136-CDS-L-elsbetiae_contig213:7567..7693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig213 7568..7693 +
1691683159.320145-CDS-L-elsbetiae_contig213:7567..76931691683159.320145-CDS-L-elsbetiae_contig213:7567..7693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig213 7568..7693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig213.6507.1

>prot_L-elsbetiae_contig213.6507.1 ID=prot_L-elsbetiae_contig213.6507.1|Name=mRNA_L-elsbetiae_contig213.6507.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
MQMATQFNKIHTGYARDSSAVAREAVKHAEEEGYDCVLIDTAGRMQNNEP
LMRALSKLINENEPELVLFVGEALVGNDGVNQLQMFNQALANNSPAGRFH
QIDGVVLTKFDTIDTKVGAALSMCYKTGQPILFVGTGQKYTHLRKLNVNY
VIKALFG*
back to top

mRNA from alignment at L-elsbetiae_contig213:4577..8312+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig213.6507.1 ID=mRNA_L-elsbetiae_contig213.6507.1|Name=mRNA_L-elsbetiae_contig213.6507.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3736bp|location=Sequence derived from alignment at L-elsbetiae_contig213:4577..8312+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTGCGATACTTTTCGGTCAGGCGCGGTGGAACAACTACGCGTCCACTG
CCGCTGTCTTGATGTTCCTCTCTTCGAAAAAGGTAAACTGTCAGTTGCTG
GTGTGATTGGTACCGGCGCGAGGTTCTCTTGGCTTGTGACAAAGGCTGGA
CAGCAGGAGAGAAAGGAAACTGCGCCTTGGGTGTCACCAATCTCGAAACA
GGGCGCGCGGGCCTACCCAATGTATTTCGTTGGTGGTAGCTTTGTTTATT
TTTTCTGCTTGGCCACCCTCGACGCTTTTTCGTCCCTTCTTTTGAGTTTC
TGCCACCGACGGAACGTTCTACGAAGGGCGTGGTATGCAATTACAGTAGT
GTTTCGTTCGCCGTGCACGACGATGGATGCAAATGGCGACGCAATTCAAC
AAAATCCACACAGGTTACGCGAGGGACTCGTCCGCGGTGGCACGAGAGGC
CGTCAAACACGCGGAAGAAGAAGGCTATGACTGTGTGCTAATCGACACTG
CGGGGAGGATGCAGGTGCGATCTAGAACTACACAGGGCGTTCAGCACCGT
GCTCGATGGGCTCCTTCCTTGCCACGAGGGTATCTTGCCAGAGTACTGAA
CCGTGGTCACACAGAAGGGTTCCTTTCCCTGGGGCCCCCACTTCCTCCTT
CTGCGGTGCTAAGTGATTTGTCGCAAGAAGGGTTGAGCCGTCACTTTACC
TCGTCGACGGTGAGATCGAAGTCACGCGCCAAGCGCTATTCACTAACTGG
GACGAAAGCGAGCGAAAAAACACACTTTTAACGAGAAAAAATCGCTTCCG
CCAGGAATCGAACCCGTGACCTACCTGCTAGAAGGTGTACGGAATACCAA
CTAGACTTCCGGGGGTGTTTCGAAGCCTTCATTTGAGACGTCAGTGAACG
AACGTGAGCGGTTACAATAGACAGCTTGTAACTGGCAGCGTGTCCGACCG
GTGCAAACCATGGCATTTTTTCATTGGTGAGAGCCACCATGAATTCGACT
GCTTCCTGGCCGAGCTGTTTTATGTTTTACTTGCACCTTTGTATTAACAA
GGAACAGGCACCATCAACGAGACATCGTAATTGTGTGCTGCTTCTCCCGT
TGATGTTGACAGAACAACGAACCGTTAATGCGAGCGCTTAGCAAACTTAT
CAACGAGAACGAGCCAGAGTTGGTGTTGTTTGTCGGCGAGGCGCTTGTGG
GCAACGACGGAGTCAACCAGCTGCAGATGTTCAACCAGGTACCGTAGTCT
GTTCAGGTTTTCACTGTGCAGTGGGCCATAGGTGCCACACCTGAAGCTCA
TCCACGAAGGATCTTGCCTGTCCGTCATGGTAGTACGCTACCAAGAATGG
AGTAAAAGCGCCTATTGAGAGACAACCCCTTTTAAGAGACACCTGGCTTC
GAAAACTCATACATATATTGTCGGCAAATTCATAGTTTTTTTTTGTCTTT
TTTTCCCGTGTTGACCTGGACCTTACCGATCGTTACCGATCGTTCAAGCT
CAGAGTTTGCTTAATTTGGCGAGCAACCTCGCCTTTTACAGCACTCGACG
CCAGGTGACGTATGGTTTTGACTTCGACCGCATCGTCAGGTCAAAATGCT
CGATCGGATTCCACTTCGCCACAAAGCTCTCGCCCCACGCAACGCCCATG
CCTCACATGACTGGCACACCCAGAGATATCACAATGGAGCAGACGCTCCA
AGTGCTTAGATGGCGATCAGTCCCCGAGGGACCGAAAACTGGGTGGTGCT
GAGGTCTTTGTTGCTGACTGCTGAGTAATGACGTAATTGGTGCCCAGTGT
GATTTTTTGGGTTAATAGTTGCACACCTTTTGACGAAATCCGATTTGCAG
AATCCGGTCGTATAAGAAATCGCATGAGATTGACATGAGGTCAACTCGGA
TTGCAACAAAAACTTGCATGCCGTCTGTTGTAGGGTTGGTTACCACGACA
TAAAAGAAAAAATCTCGAAAAACATCTGAACTTGCACGGCACCCAAAGTA
AGCAATTTTTGGCCCGAAAAACAGGCAAAAAAACACGGAGATGTCGGGTT
TTTGTCCCCGGGTATGCATGTTTGTTTTTTTTGCAAACACTCTGTGGGTA
TGTTTACCAACCAAAAAATTGTTTTGATCATCAATATTTCGCGCGCAATC
AACGAAAACAAAAAGTGTCTCTGATGGGGTATTTTTCTCCATATTTTCGG
TGAAAAATGAAGTTTACTGTCAGCTCTATCTCATCTAAATACACGTACTA
TTTTTTTTCTTTATTTTTTTTCTTTTTTTTTCTTCTTAGAGAGATCGCCC
GTGATACACGCTATCGTGCAATACCTTAATTTATGCGTAACTCCTCCTTC
CACCAGAGAACGAGCTGTTTGCGCAGAAGGTGGCTCAGGTGTAGTCGCTT
TTACTCTTACCAGTCTTGGGGATCGTTTTTTGGTGTTCAATCACGCGGCC
AGCTCCACCGATCCTGGAGTTAAGCGCTTACCAATAATGGGCACATGTAG
TATTCGCGACCACGTGTGTCTATCGCGCCTGATATTATTTGCCCGAGCGG
GGACCTGCCCTCAACTGCAGACCTACCTGAATGAAGCCCATGAGCCAATG
GTCCTACTAAATACGTTGTTTCCACTTTCCACGAATGCAAATCAGGCGTT
GGCGAATAATTCCCCTGCGGGTCGATTCCACCAGATCGATGGTGTGGTTC
TCACCAAGTTCGACACGATCGACACGAAGGTACTTGTTACTTGGCGGTGA
AGTGCATTACGCAGTACTTCTACAGCCTTTCTTGTTTTTCGTTTCACCGT
GAACCATGGTGTCTTCATCTCCAGAATAGTTGCTGCTGGATTGGTACCTA
ACACACCGCGAGGAAATTTTCATGGTTGTTTCGCGTGTCATTTTTTAGGG
TTTTCGTTGTCCCAGGGGTTTAAGGTCGTGAAGATGTTTCCTCTAACAAC
CCCCCCGCCTCTTTCGAAATGGTGCCCGTTTTCGGTACAAGGTGGGCGCG
GCGCTGTCCATGTGCTACAAGACAGGGCAGCCGATCCTGTTCGTCGGCAC
GGGTCAGAAGTACACCCACTTGAGGAAGCTCAACGTAAATTATGTTATCA
AGGCGCTCTTCGGATGATGTCGGGGACACCGTGTGGTGTTGGCTGTTTTG
TGATACATACGTATGTACGTACATACTTTCACAGTGACAGTTGTTTTTGT
GCCAACATCGCGGAATTGAATGTGCGAATTCGGTGTCTGCACACACACCC
CTTGAGTGCCTGGATCAGCCCGGGCGAATCGATTGCTTGTTTGGCTTCCG
CTTTTTTTTAGATTTCGCATGCTCTCCACTGGAGAAGGTAATGGAGTTCT
GAAATGAAACAGAGCGTCTCGGGTGCGTCTCGGGTTGTCGGGGCGTGATG
AACTCGCGCCCCATTTTTGTTACGCCAGCTTTCCGCCCCCGGCCGGGTGT
CGTGCTGCTGGTTGTCGGTGGATTGTAGGAAGGTTACGTTTATTCGTTGT
CTATGTAGTTTTTCCAGGAGGTGATCCTTGACAAGACTGCAGCAACCCCG
ATCAGACAACACTCGATCATGTGCCCTCGTTCGGGCATTCGGGTTTCAAG
CGTCTTCGTTTGACCTGGCTGTGAAGCCGAGAAATCACTCCCGAAATATT
TCATGAACTCCTAATACCTCACCTGCTGTGGGCTAGTACTGCTGTACAGT
AGGCGCAGTATACCACCCGTAGCATACCGACCAGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig213:4577..8312+

>mRNA_L-elsbetiae_contig213.6507.1 ID=mRNA_L-elsbetiae_contig213.6507.1|Name=mRNA_L-elsbetiae_contig213.6507.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig213:4577..8312+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAATGGCGACGCAATTCAACAAAATCCACACAGGTTACGCGAGGGA
CTCGTCCGCGGTGGCACGAGAGGCCGTCAAACACGCGGAAGAAGAAGGCT
ATGACTGTGTGCTAATCGACACTGCGGGGAGGATGCAGATGCAAATGGCG
ACGCAATTCAACAAAATCCACACAGGTTACGCGAGGGACTCGTCCGCGGT
GGCACGAGAGGCCGTCAAACACGCGGAAGAAGAAGGCTATGACTGTGTGC
TAATCGACACTGCGGGGAGGATGCAGAACAACGAACCGTTAATGCGAGCG
CTTAGCAAACTTATCAACGAGAACGAGCCAGAGTTGGTGTTGTTTGTCGG
CGAGGCGCTTGTGGGCAACGACGGAGTCAACCAGCTGCAGATGTTCAACC
AGAACAACGAACCGTTAATGCGAGCGCTTAGCAAACTTATCAACGAGAAC
GAGCCAGAGTTGGTGTTGTTTGTCGGCGAGGCGCTTGTGGGCAACGACGG
AGTCAACCAGCTGCAGATGTTCAACCAGGCGTTGGCGAATAATTCCCCTG
CGGGTCGATTCCACCAGATCGATGGTGTGGTTCTCACCAAGTTCGACACG
ATCGACACGAAGGCGTTGGCGAATAATTCCCCTGCGGGTCGATTCCACCA
GATCGATGGTGTGGTTCTCACCAAGTTCGACACGATCGACACGAAGGTGG
GCGCGGCGCTGTCCATGTGCTACAAGACAGGGCAGCCGATCCTGTTCGTC
GGCACGGGTCAGAAGTACACCCACTTGAGGAAGCTCAACGTAAATTATGT
TATCAAGGCGCTCTTCGGATGAGTGGGCGCGGCGCTGTCCATGTGCTACA
AGACAGGGCAGCCGATCCTGTTCGTCGGCACGGGTCAGAAGTACACCCAC
TTGAGGAAGCTCAACGTAAATTATGTTATCAAGGCGCTCTTCGGATGA
back to top