mRNA_L-elsbetiae_contig2112.6428.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2112.6428.1
Unique NamemRNA_L-elsbetiae_contig2112.6428.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2112.6428.1 vs. uniprot
Match: D7FH86_ECTSI (BRCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH86_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 4.190e-9
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 3 
Query:  201 SWQETWPTLREEGWHWEYGSGDPGASCIYLKPGVSREGA 317
            SW E WP LR EGWHW+YG     +SC+YLKPGVS++GA
Sbjct:  229 SWLEIWPKLRREGWHWDYGE-QADSSCVYLKPGVSKDGA 266
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2112.6428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH86_ECTSI4.190e-964.10BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2112contigL-elsbetiae_contig2112:3415..3733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size319
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.2018642-CDS-L-elsbetiae_contig2112:3414..37321622815866.2018642-CDS-L-elsbetiae_contig2112:3414..3732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2112 3415..3732 +
1691683155.3296297-CDS-L-elsbetiae_contig2112:3414..37321691683155.3296297-CDS-L-elsbetiae_contig2112:3414..3732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2112 3415..3732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2112.6428.1prot_L-elsbetiae_contig2112.6428.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2112 3415..3732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2112.6428.1

>prot_L-elsbetiae_contig2112.6428.1 ID=prot_L-elsbetiae_contig2112.6428.1|Name=mRNA_L-elsbetiae_contig2112.6428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
SSERLALPAQKPGAAPPPPRRRRRRRTLFNAGGRPTTKPADSSSRSVQHP
RGRRGNGCRRRPTAKRGAGRRRGLRFGRRGGTGSTGAAIRAPPASTSSRA
CREKVP
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mRNA from alignment at L-elsbetiae_contig2112:3415..3733+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2112.6428.1 ID=mRNA_L-elsbetiae_contig2112.6428.1|Name=mRNA_L-elsbetiae_contig2112.6428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=319bp|location=Sequence derived from alignment at L-elsbetiae_contig2112:3415..3733+ (Laminarionema elsbetiae ELsaHSoW15)
AGTTCGGAGCGGCTCGCTCTGCCGGCCCAAAAGCCGGGGGCTGCTCCGCC
TCCGCCCCGCCGCCGCCGCCGCCGCAGAACCCTCTTCAACGCAGGCGGCC
GGCCCACCACAAAGCCGGCGGACAGCAGCAGCAGGAGCGTGCAGCATCCC
CGGGGTCGTCGCGGAAACGGTTGCCGGAGACGGCCCACCGCGAAACGCGG
AGCTGGCAGGAGACGTGGCCTACGCTTCGGGAGGAGGGGTGGCACTGGGA
GTACGGGAGCGGCGATCCGGGCGCCTCCTGCATCTACCTCAAGCCGGGCG
TGTCGAGAGAAGGTGCCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2112:3415..3733+

>mRNA_L-elsbetiae_contig2112.6428.1 ID=mRNA_L-elsbetiae_contig2112.6428.1|Name=mRNA_L-elsbetiae_contig2112.6428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig2112:3415..3733+ (Laminarionema elsbetiae ELsaHSoW15)
AGTTCGGAGCGGCTCGCTCTGCCGGCCCAAAAGCCGGGGGCTGCTCCGCC
TCCGCCCCGCCGCCGCCGCCGCCGCAGAACCCTCTTCAACGCAGGCGGCC
GGCCCACCACAAAGCCGGCGGACAGCAGCAGCAGGAGCGTGCAGCATCCC
CGGGGTCGTCGCGGAAACGGTTGCCGGAGACGGCCCACCGCGAAACGCGG
AGCTGGCAGGAGACGTGGCCTACGCTTCGGGAGGAGGGGTGGCACTGGGA
GTACGGGAGCGGCGATCCGGGCGCCTCCTGCATCTACCTCAAGCCGGGCG
TGTCGAGAGAAGGTGCCAAGTTCGGAGCGGCTCGCTCTGCCGGCCCAAAA
GCCGGGGGCTGCTCCGCCTCCGCCCCGCCGCCGCCGCCGCCGCAGAACCC
TCTTCAACGCAGGCGGCCGGCCCACCACAAAGCCGGCGGACAGCAGCAGC
AGGAGCGTGCAGCATCCCCGGGGTCGTCGCGGAAACGGTTGCCGGAGACG
GCCCACCGCGAAACGCGGAGCTGGCAGGAGACGTGGCCTACGCTTCGGGA
GGAGGGGTGGCACTGGGAGTACGGGAGCGGCGATCCGGGCGCCTCCTGCA
TCTACCTCAAGCCGGGCGTGTCGAGAGAAGGTGCCA
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