mRNA_L-elsbetiae_contig211.6411.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig211.6411.1
Unique NamemRNA_L-elsbetiae_contig211.6411.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig211.6411.1 vs. uniprot
Match: B5LWH2_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWH2_9PHYC)

HSP 1 Score: 132 bits (333), Expect = 1.970e-36
Identity = 71/168 (42.26%), Postives = 96/168 (57.14%), Query Frame = 1 
Query:    1 MDVAPNDELYVDWITKWRLWKKAWCESDDPVVQFYVQLISKDGVYTATHHAELADGLAKSIGPPTIDQNGVIEIRNGAVVLPTIYTTTNAINRCQDRLGIVTLKLSFFSRPEILKVVLVLEDIGHGVLHDNGRVVSSRYANSIETPRKM-PWRDDPVWAIIVRELGPT 501
            M+   + +LY DWITKWR W  AWCES +P+VQF +  IS+  +Y A+ HAELA  +        +D+ GV EI  G+     I        +  D  GIVTL+LS FSR E L + L+LE  GH +LH+NGRV +     S +  ++M P+RDDPVW    + L  T
Sbjct:    1 MNSTSDLQLYTDWITKWRAWNHAWCESTEPMVQFEISFISRRRLYEASDHAELATNVGDYFKSLRVDKGGVFEITTGSAARKAIEV------KKIDSQGIVTLQLSLFSRAEALVLGLILERSGHSLLHENGRVFADTGPRSNDGVKRMLPFRDDPVWGEANKRLTDT 162
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BLAST of mRNA_L-elsbetiae_contig211.6411.1 vs. uniprot
Match: Q6XM78_9PHYC (FirrV-1-A9 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM78_9PHYC)

HSP 1 Score: 112 bits (280), Expect = 1.890e-28
Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = 1 
Query:   25 LYVDWITKWRLWKKAWCES-DDPVVQFYVQLISKDGVYTATHHAELADGLAKSIGPPTIDQNGVIEIRNGAVVLPTIYTTTNAINRCQDRLGIVTLKLSFFSRPEILKVVLVLEDIGHGVLHDNGRVVSSRYANSIETPRKMPWRDDPVWAII 480
            +Y+ WIT WR WKKAWCE  DD +V F +  +SK   Y  +HHA+    LA +      D+ G IE+  G+ ++ TI     ++       GIVTL++S  +RP++L++ L++E  GH +L++    +S            +P+RDDPVW II
Sbjct:    7 VYIGWITSWRKWKKAWCEDEDDAIVSFDLSFLSKHRRYEPSHHADFVSLLADTFPKVKTDKQGTIELSTGSAIMKTI-----SVLHVDRGFGIVTLRMSLCTRPDLLRIALLIESAGHRLLYETRPTISL-----------LPYRDDPVWDII 143
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig211.6411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B5LWH2_9PHYC1.970e-3642.26Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM78_9PHYC1.890e-2836.60FirrV-1-A9 n=1 Tax=Feldmannia irregularis virus a ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig211contigL-elsbetiae_contig211:29459..29965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-125
Ec32 orthologEc-06_005600.1
Exons1
Model size507
Cds size507
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815865.2920475-CDS-L-elsbetiae_contig211:29458..299651622815865.2920475-CDS-L-elsbetiae_contig211:29458..29965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig211 29459..29965 +
1691683154.8764212-CDS-L-elsbetiae_contig211:29458..299651691683154.8764212-CDS-L-elsbetiae_contig211:29458..29965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig211 29459..29965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig211.6411.1prot_L-elsbetiae_contig211.6411.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig211 29459..29965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig211.6411.1

>prot_L-elsbetiae_contig211.6411.1 ID=prot_L-elsbetiae_contig211.6411.1|Name=mRNA_L-elsbetiae_contig211.6411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=169bp
MDVAPNDELYVDWITKWRLWKKAWCESDDPVVQFYVQLISKDGVYTATHH
AELADGLAKSIGPPTIDQNGVIEIRNGAVVLPTIYTTTNAINRCQDRLGI
VTLKLSFFSRPEILKVVLVLEDIGHGVLHDNGRVVSSRYANSIETPRKMP
WRDDPVWAIIVRELGPTK*
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mRNA from alignment at L-elsbetiae_contig211:29459..29965+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig211.6411.1 ID=mRNA_L-elsbetiae_contig211.6411.1|Name=mRNA_L-elsbetiae_contig211.6411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=507bp|location=Sequence derived from alignment at L-elsbetiae_contig211:29459..29965+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGTCGCACCGAACGACGAATTGTATGTAGACTGGATAACAAAGTG
GAGGTTGTGGAAAAAGGCTTGGTGTGAAAGTGACGACCCCGTCGTACAAT
TTTACGTACAATTGATCAGCAAGGACGGTGTGTATACTGCGACCCACCAC
GCTGAGCTCGCGGACGGCCTCGCGAAATCGATAGGGCCACCAACTATTGA
TCAAAATGGCGTCATCGAGATCCGAAACGGTGCCGTTGTCTTGCCTACAA
TTTACACGACCACCAACGCCATTAACCGTTGTCAGGATCGTTTAGGAATT
GTGACACTGAAACTGTCGTTCTTCTCTAGGCCCGAAATCTTAAAAGTAGT
ACTGGTACTGGAAGACATCGGTCACGGAGTCTTGCACGACAATGGTAGAG
TTGTCTCTTCGAGGTATGCTAATTCCATCGAGACCCCGAGAAAGATGCCG
TGGCGTGACGATCCGGTGTGGGCCATTATTGTACGCGAATTAGGTCCCAC
AAAGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig211:29459..29965+

>mRNA_L-elsbetiae_contig211.6411.1 ID=mRNA_L-elsbetiae_contig211.6411.1|Name=mRNA_L-elsbetiae_contig211.6411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1014bp|location=Sequence derived from alignment at L-elsbetiae_contig211:29459..29965+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGTCGCACCGAACGACGAATTGTATGTAGACTGGATAACAAAGTG
GAGGTTGTGGAAAAAGGCTTGGTGTGAAAGTGACGACCCCGTCGTACAAT
TTTACGTACAATTGATCAGCAAGGACGGTGTGTATACTGCGACCCACCAC
GCTGAGCTCGCGGACGGCCTCGCGAAATCGATAGGGCCACCAACTATTGA
TCAAAATGGCGTCATCGAGATCCGAAACGGTGCCGTTGTCTTGCCTACAA
TTTACACGACCACCAACGCCATTAACCGTTGTCAGGATCGTTTAGGAATT
GTGACACTGAAACTGTCGTTCTTCTCTAGGCCCGAAATCTTAAAAGTAGT
ACTGGTACTGGAAGACATCGGTCACGGAGTCTTGCACGACAATGGTAGAG
TTGTCTCTTCGAGGTATGCTAATTCCATCGAGACCCCGAGAAAGATGCCG
TGGCGTGACGATCCGGTGTGGGCCATTATTGTACGCGAATTAGGTCCCAC
AAAGTAGATGGACGTCGCACCGAACGACGAATTGTATGTAGACTGGATAA
CAAAGTGGAGGTTGTGGAAAAAGGCTTGGTGTGAAAGTGACGACCCCGTC
GTACAATTTTACGTACAATTGATCAGCAAGGACGGTGTGTATACTGCGAC
CCACCACGCTGAGCTCGCGGACGGCCTCGCGAAATCGATAGGGCCACCAA
CTATTGATCAAAATGGCGTCATCGAGATCCGAAACGGTGCCGTTGTCTTG
CCTACAATTTACACGACCACCAACGCCATTAACCGTTGTCAGGATCGTTT
AGGAATTGTGACACTGAAACTGTCGTTCTTCTCTAGGCCCGAAATCTTAA
AAGTAGTACTGGTACTGGAAGACATCGGTCACGGAGTCTTGCACGACAAT
GGTAGAGTTGTCTCTTCGAGGTATGCTAATTCCATCGAGACCCCGAGAAA
GATGCCGTGGCGTGACGATCCGGTGTGGGCCATTATTGTACGCGAATTAG
GTCCCACAAAGTAG
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