mRNA_L-elsbetiae_contig211.6408.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig211.6408.1
Unique NamemRNA_L-elsbetiae_contig211.6408.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig211.6408.1 vs. uniprot
Match: B5LWK7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK7_9PHYC)

HSP 1 Score: 157 bits (398), Expect = 3.690e-46
Identity = 84/161 (52.17%), Postives = 118/161 (73.29%), Query Frame = 1 
Query:   25 GALKGSLYGLFGGLILGISGSVFGPPIDYEKVLIWSNKFGKKTRFTNLETVSILKEDLYEVFQNKESNIQAFNEVFRNIQSAITLYHPIKVHAETAEVMTASRMTNFVIRASKAMEAMHVEILVIDVVKALHFQKAMMNLQLSLEEMINFVRLRSKNALPT 507
            G ++G L+G  GGLILG +GS+       E  L+W+N+ G+  RFT+L ++  L++DLY VF ++E    AFNE FRNIQ+ I++YHP+K  A  A +M+A++MTNF +RASKA+ AMH EIL  D +KA  F+KAMM++QLSLEE I+FVRL+SK +LP+
Sbjct:    6 GVVRGGLFGFVGGLILGAAGSLSSNSESAEVELVWTNREGRTVRFTHLGSIPSLRDDLYTVFHHREFKRDAFNEAFRNIQNVISVYHPVK-EAAVANMMSATKMTNFGVRASKALGAMHDEILAKDPMKAAAFEKAMMSIQLSLEESIDFVRLKSKKSLPS 165
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BLAST of mRNA_L-elsbetiae_contig211.6408.1 vs. uniprot
Match: Q6XM43_9PHYC (FirrV-1-A44 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM43_9PHYC)

HSP 1 Score: 136 bits (342), Expect = 1.570e-37
Identity = 78/173 (45.09%), Postives = 114/173 (65.90%), Query Frame = 1 
Query:   10 SGILGGALKGSLYGLFGGLILGISGSVFGPPIDYEKVLIWSNKFGKKTRFTNLETVSILKEDLYEVFQNKESNIQAFNEVFRNIQSAITLYHPIKVHAETAE-----VMTASRMTNFVIRASKAMEAMHVEILVIDVVKALHFQKAMMNLQLSLEEMINFVRLRSKNALPTLL 513
            S ++ G  KG LYGL GG+ LG +G++   P    + L+W+   GKK R   L  V  LK+ L  +FQ++  N +AFNE FRNIQ+ +++YH +   + T +     +M A++MTN+ +RASKAMEA+HV IL  D  KA  F++AMM +QL+LEE IN +RL+SK +LPT++
Sbjct:    3 SALMKGCFKGGLYGLCGGIFLGAAGAL--TPSQTPEQLVWTTHQGKKVRLVYLHHVPGLKDHLTVIFQHRTRNERAFNEAFRNIQNVLSVYH-LSSSSRTPDNDPPDIMAATKMTNYTVRASKAMEAVHVSILQSDFTKAAAFEEAMMKIQLTLEEKINEIRLKSKQSLPTIV 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig211.6408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B5LWK7_9PHYC3.690e-4652.17Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM43_9PHYC1.570e-3745.09FirrV-1-A44 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig211contigL-elsbetiae_contig211:17887..18402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size516
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815865.1860912-CDS-L-elsbetiae_contig211:17886..184021622815865.1860912-CDS-L-elsbetiae_contig211:17886..18402Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig211 17887..18402 -
1691683154.8286967-CDS-L-elsbetiae_contig211:17886..184021691683154.8286967-CDS-L-elsbetiae_contig211:17886..18402Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig211 17887..18402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig211.6408.1prot_L-elsbetiae_contig211.6408.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig211 17887..18402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig211.6408.1

>prot_L-elsbetiae_contig211.6408.1 ID=prot_L-elsbetiae_contig211.6408.1|Name=mRNA_L-elsbetiae_contig211.6408.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
MTSSGILGGALKGSLYGLFGGLILGISGSVFGPPIDYEKVLIWSNKFGKK
TRFTNLETVSILKEDLYEVFQNKESNIQAFNEVFRNIQSAITLYHPIKVH
AETAEVMTASRMTNFVIRASKAMEAMHVEILVIDVVKALHFQKAMMNLQL
SLEEMINFVRLRSKNALPTLL*
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mRNA from alignment at L-elsbetiae_contig211:17887..18402-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig211.6408.1 ID=mRNA_L-elsbetiae_contig211.6408.1|Name=mRNA_L-elsbetiae_contig211.6408.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig211:17887..18402- (Laminarionema elsbetiae ELsaHSoW15)
ATGACTTCCTCGGGCATTCTGGGTGGCGCTTTGAAGGGTAGTCTATACGG
ACTGTTCGGTGGTTTGATTCTTGGTATTTCTGGTAGCGTTTTTGGCCCAC
CGATAGACTACGAGAAGGTCTTAATATGGTCCAATAAATTTGGGAAAAAA
ACGCGTTTCACGAATTTGGAAACGGTTTCCATCTTGAAAGAAGATCTTTA
CGAAGTATTCCAAAACAAGGAATCCAATATACAGGCCTTCAACGAGGTAT
TCAGGAATATCCAGAGTGCTATCACGCTATACCACCCGATAAAAGTACAT
GCGGAGACGGCGGAGGTTATGACCGCCTCTCGTATGACCAATTTCGTCAT
TCGAGCTTCCAAGGCAATGGAGGCCATGCACGTCGAAATACTGGTGATTG
ATGTCGTAAAGGCTTTACATTTTCAAAAAGCCATGATGAATCTGCAATTA
TCTTTAGAGGAAATGATAAATTTTGTTCGACTAAGGTCGAAGAATGCTCT
ACCGACTCTACTTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig211:17887..18402-

>mRNA_L-elsbetiae_contig211.6408.1 ID=mRNA_L-elsbetiae_contig211.6408.1|Name=mRNA_L-elsbetiae_contig211.6408.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig211:17887..18402- (Laminarionema elsbetiae ELsaHSoW15)
ATGACTTCCTCGGGCATTCTGGGTGGCGCTTTGAAGGGTAGTCTATACGG
ACTGTTCGGTGGTTTGATTCTTGGTATTTCTGGTAGCGTTTTTGGCCCAC
CGATAGACTACGAGAAGGTCTTAATATGGTCCAATAAATTTGGGAAAAAA
ACGCGTTTCACGAATTTGGAAACGGTTTCCATCTTGAAAGAAGATCTTTA
CGAAGTATTCCAAAACAAGGAATCCAATATACAGGCCTTCAACGAGGTAT
TCAGGAATATCCAGAGTGCTATCACGCTATACCACCCGATAAAAGTACAT
GCGGAGACGGCGGAGGTTATGACCGCCTCTCGTATGACCAATTTCGTCAT
TCGAGCTTCCAAGGCAATGGAGGCCATGCACGTCGAAATACTGGTGATTG
ATGTCGTAAAGGCTTTACATTTTCAAAAAGCCATGATGAATCTGCAATTA
TCTTTAGAGGAAATGATAAATTTTGTTCGACTAAGGTCGAAGAATGCTCT
ACCGACTCTACTTTAGATGACTTCCTCGGGCATTCTGGGTGGCGCTTTGA
AGGGTAGTCTATACGGACTGTTCGGTGGTTTGATTCTTGGTATTTCTGGT
AGCGTTTTTGGCCCACCGATAGACTACGAGAAGGTCTTAATATGGTCCAA
TAAATTTGGGAAAAAAACGCGTTTCACGAATTTGGAAACGGTTTCCATCT
TGAAAGAAGATCTTTACGAAGTATTCCAAAACAAGGAATCCAATATACAG
GCCTTCAACGAGGTATTCAGGAATATCCAGAGTGCTATCACGCTATACCA
CCCGATAAAAGTACATGCGGAGACGGCGGAGGTTATGACCGCCTCTCGTA
TGACCAATTTCGTCATTCGAGCTTCCAAGGCAATGGAGGCCATGCACGTC
GAAATACTGGTGATTGATGTCGTAAAGGCTTTACATTTTCAAAAAGCCAT
GATGAATCTGCAATTATCTTTAGAGGAAATGATAAATTTTGTTCGACTAA
GGTCGAAGAATGCTCTACCGACTCTACTTTAG
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