mRNA_L-elsbetiae_contig211.6400.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig211.6400.1
Unique NamemRNA_L-elsbetiae_contig211.6400.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig211.6400.1 vs. uniprot
Match: B5LWK2_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK2_9PHYC)

HSP 1 Score: 117 bits (294), Expect = 1.580e-32
Identity = 55/92 (59.78%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:    1 VGRRASVLHGHAKHTSGGLTKADLTHNKAGCIVSKKNSARAKRTESPLMQLWRQSVAKMYENPKYSGRFVPIKKGTAFYNDINREYHRLLEE 276
            +G RA+V HG A+ TSGGL K DL  NK G IVSKKNS RAKRTESPL++ WR++V   YE PKY+G+F  IKKGT FY ++N EY ++L++
Sbjct:    4 IGSRANVFHGTARKTSGGLVKGDLKLNKNGSIVSKKNSLRAKRTESPLLKAWRKAVKNTYEKPKYAGKFCIIKKGTPFYREVNAEYQKILKK 95
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BLAST of mRNA_L-elsbetiae_contig211.6400.1 vs. uniprot
Match: Q6XM49_9PHYC (FirrV-1-A38 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM49_9PHYC)

HSP 1 Score: 109 bits (272), Expect = 3.980e-29
Identity = 56/95 (58.95%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:    1 VGRRASVLHGHAKHTSGGLTKADLTHNKAGCIVSKKNSARAKRTESPLMQLWRQSVAKMYENPKY-SGRFVPIKKGTAFYNDINREYHRLLEEKG 282
            VG RASV  G+A+ T+GGLTK DL  NK G IVSKKNS+RAKRTESP M+ WR++V   YE+P++ +G F  IKKGT FY  + +EY  +LEE G
Sbjct:    7 VGSRASVFRGYAEKTAGGLTKKDLKLNKNGLIVSKKNSSRAKRTESPYMKAWREAVKVTYEDPRFDTGEFHVIKKGTPFYRAVKKEYAYILEESG 101
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BLAST of mRNA_L-elsbetiae_contig211.6400.1 vs. uniprot
Match: A0A6C0CEL3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CEL3_9ZZZZ)

HSP 1 Score: 50.1 bits (118), Expect = 8.110e-6
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 VGRRASVLHGHAKHTSGGLTKADLTHNKAGCIVSKKNSARAKR 129
             G RA V++G A+ T+G LT+ DL +NK G IVS+K SARAKR
Sbjct:   22 TGSRAQVMNGTARRTAGNLTRKDLKYNKNGRIVSRKQSARAKR 64
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BLAST of mRNA_L-elsbetiae_contig211.6400.1 vs. uniprot
Match: A0A813LNX9_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LNX9_POLGL)

HSP 1 Score: 50.4 bits (119), Expect = 4.280e-5
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    1 VGRRA--SVLHGHAKHTSGGLTKADLTHNKAGCIVSKKNSARAKRTESPLMQLWRQSVA 171
            +G+RA  SV  G    TSGGLTK  LT NKAG +VSK +SARAK+  S  +  W ++ +
Sbjct:   59 MGKRAKSSVFRGSKAKTSGGLTKDKLTKNKAGKVVSKASSARAKKVYSKTIGAWNKACS 117
[Close]
BLAST of mRNA_L-elsbetiae_contig211.6400.1 vs. uniprot
Match: A0A813KR69_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KR69_POLGL)

HSP 1 Score: 49.7 bits (117), Expect = 8.160e-5
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    4 GRRA--SVLHGHAKHTSGGLTKADLTHNKAGCIVSKKNSARAKRTESPLMQLWRQSVA 171
            G+RA  SV  G    TSGGLTK  LT NKAG +VSK +SARAK+  S  +  W ++ +
Sbjct:   55 GKRAKSSVFRGSKAKTSGGLTKDKLTKNKAGKVVSKASSARAKKVYSKTIGAWNKACS 112
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig211.6400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
B5LWK2_9PHYC1.580e-3259.78Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM49_9PHYC3.980e-2958.95FirrV-1-A38 n=1 Tax=Feldmannia irregularis virus a... [more]
A0A6C0CEL3_9ZZZZ8.110e-658.14Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A813LNX9_POLGL4.280e-549.15Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813KR69_POLGL8.160e-550.00Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig211contigL-elsbetiae_contig211:6508..6789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815864.8877885-CDS-L-elsbetiae_contig211:6507..67891622815864.8877885-CDS-L-elsbetiae_contig211:6507..6789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig211 6508..6789 -
1691683154.7217183-CDS-L-elsbetiae_contig211:6507..67891691683154.7217183-CDS-L-elsbetiae_contig211:6507..6789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig211 6508..6789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig211.6400.1prot_L-elsbetiae_contig211.6400.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig211 6508..6789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig211.6400.1

>prot_L-elsbetiae_contig211.6400.1 ID=prot_L-elsbetiae_contig211.6400.1|Name=mRNA_L-elsbetiae_contig211.6400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
VGRRASVLHGHAKHTSGGLTKADLTHNKAGCIVSKKNSARAKRTESPLMQ
LWRQSVAKMYENPKYSGRFVPIKKGTAFYNDINREYHRLLEEKG
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mRNA from alignment at L-elsbetiae_contig211:6508..6789-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig211.6400.1 ID=mRNA_L-elsbetiae_contig211.6400.1|Name=mRNA_L-elsbetiae_contig211.6400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=282bp|location=Sequence derived from alignment at L-elsbetiae_contig211:6508..6789- (Laminarionema elsbetiae ELsaHSoW15)
GTGGGTCGTCGGGCGAGTGTTTTACATGGTCATGCCAAGCACACGTCGGG
TGGCCTTACGAAGGCGGACTTGACTCACAATAAGGCTGGTTGTATCGTTT
CAAAAAAGAACTCGGCAAGGGCAAAGCGTACCGAGTCTCCTCTCATGCAA
CTTTGGCGACAGTCGGTTGCTAAGATGTACGAGAACCCGAAATACAGTGG
AAGATTTGTCCCAATCAAGAAGGGGACTGCCTTTTATAACGATATTAACA
GGGAGTACCACAGGCTCCTTGAGGAGAAGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig211:6508..6789-

>mRNA_L-elsbetiae_contig211.6400.1 ID=mRNA_L-elsbetiae_contig211.6400.1|Name=mRNA_L-elsbetiae_contig211.6400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig211:6508..6789- (Laminarionema elsbetiae ELsaHSoW15)
GTGGGTCGTCGGGCGAGTGTTTTACATGGTCATGCCAAGCACACGTCGGG
TGGCCTTACGAAGGCGGACTTGACTCACAATAAGGCTGGTTGTATCGTTT
CAAAAAAGAACTCGGCAAGGGCAAAGCGTACCGAGTCTCCTCTCATGCAA
CTTTGGCGACAGTCGGTTGCTAAGATGTACGAGAACCCGAAATACAGTGG
AAGATTTGTCCCAATCAAGAAGGGGACTGCCTTTTATAACGATATTAACA
GGGAGTACCACAGGCTCCTTGAGGAGAAGGGCGTGGGTCGTCGGGCGAGT
GTTTTACATGGTCATGCCAAGCACACGTCGGGTGGCCTTACGAAGGCGGA
CTTGACTCACAATAAGGCTGGTTGTATCGTTTCAAAAAAGAACTCGGCAA
GGGCAAAGCGTACCGAGTCTCCTCTCATGCAACTTTGGCGACAGTCGGTT
GCTAAGATGTACGAGAACCCGAAATACAGTGGAAGATTTGTCCCAATCAA
GAAGGGGACTGCCTTTTATAACGATATTAACAGGGAGTACCACAGGCTCC
TTGAGGAGAAGGGC
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