mRNA_L-elsbetiae_contig211.6399.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig211.6399.1
Unique NamemRNA_L-elsbetiae_contig211.6399.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig211.6399.1 vs. uniprot
Match: Q6XM50_9PHYC (FirrV-1-A37 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM50_9PHYC)

HSP 1 Score: 151 bits (382), Expect = 4.590e-43
Identity = 87/188 (46.28%), Postives = 119/188 (63.30%), Query Frame = 1 
Query:    1 MSAYNADSIRDAFGKMDDLQFRMIKDDHDEEKNLIPKSNEREKPCCLLESWLKKCSLRSHAHSSASVMCRRMFNFISIPKILCGGFAVALSFWATSDVNGTSHEVRVAVAILSATSTFLDSLVRLLRFSEKEFEHRMASGMYSQLCRKIEVNVFSPSPETSMKNINSLLAEVSVQFSNIITFSPHITI 564
            MS Y+  ++ +   KM +L    I+DD    +    + N  ++   LL++WL KCS+R+  H+  S+    +   +SIPK+  GG A ALSFWATSD+NG+SH VRV VA LSA ST L SL + LR+ E  F H+MASGMYSQLCRKIE+ VFS   + S    N  +AE++ +F+NI TFSP I +
Sbjct:   13 MSVYDTSAMDETLKKMGEL----IQDD----EYADVEQNNNKRSLMLLKTWLTKCSIRARTHAKLSMRAGVLDVMLSIPKLFFGGAATALSFWATSDINGSSHGVRVLVATLSAVSTILASLGQFLRYDEARFRHQMASGMYSQLCRKIEMLVFS---DFSDSTGNRDVAEIAARFANIATFSPQIQV 189
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BLAST of mRNA_L-elsbetiae_contig211.6399.1 vs. uniprot
Match: B5LWK1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK1_9PHYC)

HSP 1 Score: 150 bits (380), Expect = 4.750e-43
Identity = 76/142 (53.52%), Postives = 101/142 (71.13%), Query Frame = 1 
Query:  139 LLESWLKKCSLRSHAHSSASVMCRRMFNFISIPKILCGGFAVALSFWATSDVNGTSHEVRVAVAILSATSTFLDSLVRLLRFSEKEFEHRMASGMYSQLCRKIEVNVFSPSPETSMKNINSLLAEVSVQFSNIITFSPHITI 564
            L+ESWLKKCS R+H HS  S+        +S+PK+  GG A ALSFWATSD+NG+SH VRV VA+LSA ST L SL + LR+ E ++ H+MA+GMY+QLCR+IE++ FS   E      +++LAE++  FSN+ TFSP I I
Sbjct:   29 LMESWLKKCSARAHEHSRESLRSGFANRMLSVPKLFFGGAATALSFWATSDLNGSSHRVRVLVAVLSAISTVLASLSQFLRYDESQYRHQMAAGMYTQLCRRIELSFFS---EDEGGVNDAVLAEIAAGFSNVATFSPQINI 167
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig211.6399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q6XM50_9PHYC4.590e-4346.28FirrV-1-A37 n=1 Tax=Feldmannia irregularis virus a... [more]
B5LWK1_9PHYC4.750e-4353.52Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig211contigL-elsbetiae_contig211:5767..6357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size591
Cds size591
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815864.8579013-CDS-L-elsbetiae_contig211:5766..63571622815864.8579013-CDS-L-elsbetiae_contig211:5766..6357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig211 5767..6357 -
1691683154.708957-CDS-L-elsbetiae_contig211:5766..63571691683154.708957-CDS-L-elsbetiae_contig211:5766..6357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig211 5767..6357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig211.6399.1prot_L-elsbetiae_contig211.6399.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig211 5767..6357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig211.6399.1

>prot_L-elsbetiae_contig211.6399.1 ID=prot_L-elsbetiae_contig211.6399.1|Name=mRNA_L-elsbetiae_contig211.6399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=197bp
MSAYNADSIRDAFGKMDDLQFRMIKDDHDEEKNLIPKSNEREKPCCLLES
WLKKCSLRSHAHSSASVMCRRMFNFISIPKILCGGFAVALSFWATSDVNG
TSHEVRVAVAILSATSTFLDSLVRLLRFSEKEFEHRMASGMYSQLCRKIE
VNVFSPSPETSMKNINSLLAEVSVQFSNIITFSPHITIKSTSRNNK*
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mRNA from alignment at L-elsbetiae_contig211:5767..6357-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig211.6399.1 ID=mRNA_L-elsbetiae_contig211.6399.1|Name=mRNA_L-elsbetiae_contig211.6399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=591bp|location=Sequence derived from alignment at L-elsbetiae_contig211:5767..6357- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCGCATACAATGCAGATTCGATACGTGATGCTTTTGGAAAGATGGA
TGACCTCCAATTCAGGATGATAAAGGACGACCACGACGAAGAAAAAAATC
TAATCCCAAAAAGTAATGAGAGAGAAAAGCCGTGTTGTCTCTTGGAGTCA
TGGTTAAAGAAGTGTAGTTTGAGGTCACATGCACATAGTTCGGCGTCGGT
AATGTGCAGAAGAATGTTTAATTTTATTTCAATTCCAAAGATATTGTGCG
GGGGCTTCGCTGTCGCTTTGTCGTTTTGGGCAACAAGTGATGTAAACGGG
ACATCGCACGAGGTTCGCGTGGCGGTCGCGATTCTGTCGGCCACATCGAC
ATTTCTAGATTCTCTGGTACGACTTTTGCGTTTCTCCGAGAAGGAATTTG
AGCACAGAATGGCGTCCGGTATGTATTCTCAGTTGTGCAGGAAGATCGAA
GTGAACGTGTTCTCACCGTCACCAGAGACTTCCATGAAAAACATAAACTC
TCTTTTGGCGGAAGTTTCTGTCCAGTTTTCAAATATAATCACCTTTAGTC
CCCATATCACGATTAAAAGTACTTCAAGAAACAACAAATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig211:5767..6357-

>mRNA_L-elsbetiae_contig211.6399.1 ID=mRNA_L-elsbetiae_contig211.6399.1|Name=mRNA_L-elsbetiae_contig211.6399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1182bp|location=Sequence derived from alignment at L-elsbetiae_contig211:5767..6357- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCGCATACAATGCAGATTCGATACGTGATGCTTTTGGAAAGATGGA
TGACCTCCAATTCAGGATGATAAAGGACGACCACGACGAAGAAAAAAATC
TAATCCCAAAAAGTAATGAGAGAGAAAAGCCGTGTTGTCTCTTGGAGTCA
TGGTTAAAGAAGTGTAGTTTGAGGTCACATGCACATAGTTCGGCGTCGGT
AATGTGCAGAAGAATGTTTAATTTTATTTCAATTCCAAAGATATTGTGCG
GGGGCTTCGCTGTCGCTTTGTCGTTTTGGGCAACAAGTGATGTAAACGGG
ACATCGCACGAGGTTCGCGTGGCGGTCGCGATTCTGTCGGCCACATCGAC
ATTTCTAGATTCTCTGGTACGACTTTTGCGTTTCTCCGAGAAGGAATTTG
AGCACAGAATGGCGTCCGGTATGTATTCTCAGTTGTGCAGGAAGATCGAA
GTGAACGTGTTCTCACCGTCACCAGAGACTTCCATGAAAAACATAAACTC
TCTTTTGGCGGAAGTTTCTGTCCAGTTTTCAAATATAATCACCTTTAGTC
CCCATATCACGATTAAAAGTACTTCAAGAAACAACAAATAAATGTCCGCA
TACAATGCAGATTCGATACGTGATGCTTTTGGAAAGATGGATGACCTCCA
ATTCAGGATGATAAAGGACGACCACGACGAAGAAAAAAATCTAATCCCAA
AAAGTAATGAGAGAGAAAAGCCGTGTTGTCTCTTGGAGTCATGGTTAAAG
AAGTGTAGTTTGAGGTCACATGCACATAGTTCGGCGTCGGTAATGTGCAG
AAGAATGTTTAATTTTATTTCAATTCCAAAGATATTGTGCGGGGGCTTCG
CTGTCGCTTTGTCGTTTTGGGCAACAAGTGATGTAAACGGGACATCGCAC
GAGGTTCGCGTGGCGGTCGCGATTCTGTCGGCCACATCGACATTTCTAGA
TTCTCTGGTACGACTTTTGCGTTTCTCCGAGAAGGAATTTGAGCACAGAA
TGGCGTCCGGTATGTATTCTCAGTTGTGCAGGAAGATCGAAGTGAACGTG
TTCTCACCGTCACCAGAGACTTCCATGAAAAACATAAACTCTCTTTTGGC
GGAAGTTTCTGTCCAGTTTTCAAATATAATCACCTTTAGTCCCCATATCA
CGATTAAAAGTACTTCAAGAAACAACAAATAA
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