mRNA_L-elsbetiae_contig211.6398.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig211.6398.1
Unique NamemRNA_L-elsbetiae_contig211.6398.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig211.6398.1 vs. uniprot
Match: B5LWK0_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK0_9PHYC)

HSP 1 Score: 203 bits (517), Expect = 2.790e-64
Identity = 103/164 (62.80%), Postives = 138/164 (84.15%), Query Frame = 1 
Query:   10 ASLSRFEAEKTYANGWSNTSLDLLESLYTECKKKTVAYSEAARQSRKNHRMLTIPSLVIASAATATSFFAAGTQCTEDSSDSEGLKVTVAMLTSVTAVLAGIGALYSFDSKTTACIAASGSFDSLAKKTQIQIYLTNELRGPVEVVINDVSAEFCHLTNTSPLL 501
            A LS FEAE+ + N W+N SLDLLE L+ +CK  + AY++AAR +R  HR ++IP++V+AS ATATSFF+AG+ C +D  ++  +K++VA+LTS+TA+L G+ ALYSFDSKTTACIAASG+FD+LAKK Q+QI+L+N+LRGPVEVV+ ++SAEFCHLTNTSPLL
Sbjct:    6 ARLSNFEAERVFENDWTNASLDLLEGLHKQCKDNSSAYADAARVARWKHRAVSIPTIVVASFATATSFFSAGSSC-DDDEENTAVKISVAILTSITAILGGVSALYSFDSKTTACIAASGNFDALAKKAQLQIFLSNQLRGPVEVVLTEISAEFCHLTNTSPLL 168
[Close]
BLAST of mRNA_L-elsbetiae_contig211.6398.1 vs. uniprot
Match: Q6XM51_9PHYC (FirrV-1-A36 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM51_9PHYC)

HSP 1 Score: 192 bits (489), Expect = 5.370e-60
Identity = 99/162 (61.11%), Postives = 132/162 (81.48%), Query Frame = 1 
Query:   16 LSRFEAEKTYANGWSNTSLDLLESLYTECKKKTVAYSEAARQSRKNHRMLTIPSLVIASAATATSFFAAGTQCTEDSSDSEGLKVTVAMLTSVTAVLAGIGALYSFDSKTTACIAASGSFDSLAKKTQIQIYLTNELRGPVEVVINDVSAEFCHLTNTSPLL 501
            LS FEAEK + NGW+N S+DLLE +  +C+    AY+ AAR +R  +RML+IPS+V+AS ATATSFF+AG+ C  ++ +S  +K+ VA+LTS+TA+L G+  LYSFDSK TACIAASG+FD+LAK+ Q+QIYL+N LRGPVEV++ ++SAE+CHLTNTSPLL
Sbjct:   11 LSAFEAEKIFDNGWTNASMDLLEDMCKQCRTNASAYARAARTARWKYRMLSIPSIVVASFATATSFFSAGSSC--EAEESNAIKICVAILTSITAILHGVTHLYSFDSKMTACIAASGNFDALAKQAQMQIYLSNNLRGPVEVILTEISAEYCHLTNTSPLL 170
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig211.6398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B5LWK0_9PHYC2.790e-6462.80Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM51_9PHYC5.370e-6061.11FirrV-1-A36 n=1 Tax=Feldmannia irregularis virus a... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig211contigL-elsbetiae_contig211:4510..5013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-184 DUF4231
Ec32 orthologEc-06_005080.1
Exons1
Model size504
Cds size504
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815864.8271568-CDS-L-elsbetiae_contig211:4509..50131622815864.8271568-CDS-L-elsbetiae_contig211:4509..5013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig211 4510..5013 -
1691683154.697349-CDS-L-elsbetiae_contig211:4509..50131691683154.697349-CDS-L-elsbetiae_contig211:4509..5013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig211 4510..5013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig211.6398.1prot_L-elsbetiae_contig211.6398.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig211 4510..5013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig211.6398.1

>prot_L-elsbetiae_contig211.6398.1 ID=prot_L-elsbetiae_contig211.6398.1|Name=mRNA_L-elsbetiae_contig211.6398.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=168bp
TTNASLSRFEAEKTYANGWSNTSLDLLESLYTECKKKTVAYSEAARQSRK
NHRMLTIPSLVIASAATATSFFAAGTQCTEDSSDSEGLKVTVAMLTSVTA
VLAGIGALYSFDSKTTACIAASGSFDSLAKKTQIQIYLTNELRGPVEVVI
NDVSAEFCHLTNTSPLL*
back to top

mRNA from alignment at L-elsbetiae_contig211:4510..5013-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig211.6398.1 ID=mRNA_L-elsbetiae_contig211.6398.1|Name=mRNA_L-elsbetiae_contig211.6398.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig211:4510..5013- (Laminarionema elsbetiae ELsaHSoW15)
ACGACCAATGCGAGCTTGAGTAGGTTCGAGGCAGAAAAAACATATGCGAA
CGGGTGGAGCAACACAAGTCTCGACCTCCTTGAATCCCTGTACACGGAAT
GCAAAAAAAAGACCGTCGCGTACTCGGAGGCGGCCCGCCAGAGCAGAAAG
AATCACCGTATGCTGACAATCCCTTCTCTTGTCATTGCTAGCGCAGCCAC
GGCGACGTCATTCTTTGCCGCCGGGACACAGTGTACGGAGGACTCGAGTG
ACTCCGAGGGCTTAAAGGTGACGGTAGCGATGTTGACTTCTGTGACCGCC
GTACTGGCCGGAATCGGTGCTCTGTACTCTTTCGACTCAAAAACAACTGC
GTGTATAGCTGCTAGTGGAAGCTTCGACTCCTTGGCGAAGAAAACCCAGA
TCCAAATCTACTTAACCAACGAGTTGCGCGGACCGGTGGAGGTGGTAATT
AATGACGTTTCGGCGGAATTCTGTCACCTGACAAACACGTCCCCACTACT
CTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig211:4510..5013-

>mRNA_L-elsbetiae_contig211.6398.1 ID=mRNA_L-elsbetiae_contig211.6398.1|Name=mRNA_L-elsbetiae_contig211.6398.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig211:4510..5013- (Laminarionema elsbetiae ELsaHSoW15)
ACGACCAATGCGAGCTTGAGTAGGTTCGAGGCAGAAAAAACATATGCGAA
CGGGTGGAGCAACACAAGTCTCGACCTCCTTGAATCCCTGTACACGGAAT
GCAAAAAAAAGACCGTCGCGTACTCGGAGGCGGCCCGCCAGAGCAGAAAG
AATCACCGTATGCTGACAATCCCTTCTCTTGTCATTGCTAGCGCAGCCAC
GGCGACGTCATTCTTTGCCGCCGGGACACAGTGTACGGAGGACTCGAGTG
ACTCCGAGGGCTTAAAGGTGACGGTAGCGATGTTGACTTCTGTGACCGCC
GTACTGGCCGGAATCGGTGCTCTGTACTCTTTCGACTCAAAAACAACTGC
GTGTATAGCTGCTAGTGGAAGCTTCGACTCCTTGGCGAAGAAAACCCAGA
TCCAAATCTACTTAACCAACGAGTTGCGCGGACCGGTGGAGGTGGTAATT
AATGACGTTTCGGCGGAATTCTGTCACCTGACAAACACGTCCCCACTACT
CTAAACGACCAATGCGAGCTTGAGTAGGTTCGAGGCAGAAAAAACATATG
CGAACGGGTGGAGCAACACAAGTCTCGACCTCCTTGAATCCCTGTACACG
GAATGCAAAAAAAAGACCGTCGCGTACTCGGAGGCGGCCCGCCAGAGCAG
AAAGAATCACCGTATGCTGACAATCCCTTCTCTTGTCATTGCTAGCGCAG
CCACGGCGACGTCATTCTTTGCCGCCGGGACACAGTGTACGGAGGACTCG
AGTGACTCCGAGGGCTTAAAGGTGACGGTAGCGATGTTGACTTCTGTGAC
CGCCGTACTGGCCGGAATCGGTGCTCTGTACTCTTTCGACTCAAAAACAA
CTGCGTGTATAGCTGCTAGTGGAAGCTTCGACTCCTTGGCGAAGAAAACC
CAGATCCAAATCTACTTAACCAACGAGTTGCGCGGACCGGTGGAGGTGGT
AATTAATGACGTTTCGGCGGAATTCTGTCACCTGACAAACACGTCCCCAC
TACTCTAA
back to top