mRNA_L-elsbetiae_contig21094.6397.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21094.6397.1
Unique NamemRNA_L-elsbetiae_contig21094.6397.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21094.6397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21094contigL-elsbetiae_contig21094:1367..2267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size901
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21094.6397.1prot_L-elsbetiae_contig21094.6397.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21094 1647..2243 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815864.7356155-UTR-L-elsbetiae_contig21094:1366..16461622815864.7356155-UTR-L-elsbetiae_contig21094:1366..1646Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21094 1367..1646 +
1691683154.6550486-UTR-L-elsbetiae_contig21094:1366..16461691683154.6550486-UTR-L-elsbetiae_contig21094:1366..1646Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21094 1367..1646 +
1622815864.759012-UTR-L-elsbetiae_contig21094:2243..22671622815864.759012-UTR-L-elsbetiae_contig21094:2243..2267Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21094 2244..2267 +
1691683154.6763885-UTR-L-elsbetiae_contig21094:2243..22671691683154.6763885-UTR-L-elsbetiae_contig21094:2243..2267Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21094 2244..2267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815864.7478542-CDS-L-elsbetiae_contig21094:1646..22431622815864.7478542-CDS-L-elsbetiae_contig21094:1646..2243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21094 1647..2243 +
1691683154.6658113-CDS-L-elsbetiae_contig21094:1646..22431691683154.6658113-CDS-L-elsbetiae_contig21094:1646..2243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21094 1647..2243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21094.6397.1

>prot_L-elsbetiae_contig21094.6397.1 ID=prot_L-elsbetiae_contig21094.6397.1|Name=mRNA_L-elsbetiae_contig21094.6397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=199bp
MPRPNSLKRHKHQKQHVHDTWGNLTLTWRHYRPDHTSHNQLTPYTLSCLS
IHFAQAAPAALGLLSFAPPARRQKQAIFSRLNPTFNTTSALAQPLRKSRR
RPDFIAHRANTNHKLMMTKYRRHVYVYVVSVNDRGHQTPFPRYPLRNSRI
RTHRDRKVVSALHLPALSLHCDRSCSRRHKIPTPPRPGQIFKDLFLRM*
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mRNA from alignment at L-elsbetiae_contig21094:1367..2267+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21094.6397.1 ID=mRNA_L-elsbetiae_contig21094.6397.1|Name=mRNA_L-elsbetiae_contig21094.6397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=901bp|location=Sequence derived from alignment at L-elsbetiae_contig21094:1367..2267+ (Laminarionema elsbetiae ELsaHSoW15)
CGCAATTTACACTCCCCCCGTGCGGCACAGGCACACCAAGGACAAGAAAC
TTGCACTCTTATGTATATTGCCCGATTTACACGCCGGAAAAAACCCGCTT
TTTTTCGAGGCAGGCAGGAAAGCCCCCACTTGAAACAAGCTAAAAAAAGA
GAGAAAATGCCAAGACCGAAGAGTCTCAAATGGCACAAGCACCAAAAACA
CACAGACATAAAATAGGCGCCAGACGAGCAAGGTCTAGCTAGGCCTCGAA
ACAAACCAAAAAAAAAAAAGAGAAGAGAAAATGCCGAGACCGAACAGTCT
CAAGCGGCACAAACACCAAAAACAACACGTACATGATACATGGGGGAACC
TTACCCTCACTTGGCGACACTATCGCCCCGACCACACGTCACACAACCAA
CTAACGCCGTACACACTCTCATGCTTGAGCATTCACTTCGCACAAGCCGC
CCCAGCAGCTCTCGGCCTGCTCAGTTTCGCGCCTCCGGCGAGAAGACAAA
AACAAGCCATATTCTCTCGTCTAAACCCAACGTTTAACACAACAAGCGCC
CTCGCCCAACCACTTCGAAAATCACGCCGTCGTCCTGACTTCATTGCCCA
CAGAGCAAACACCAACCACAAGCTAATGATGACAAAATATAGGAGACATG
TATATGTATATGTAGTTTCTGTAAACGACCGAGGCCACCAGACGCCCTTC
CCACGTTACCCTCTCCGCAACTCCCGTATCCGTACACATCGCGACCGGAA
GGTCGTGTCAGCGCTCCACTTGCCCGCTCTTTCTCTCCATTGCGATAGGT
CTTGTAGTAGACGACACAAGATACCAACCCCCCCGCGCCCTGGACAGATT
TTCAAAGATCTATTCCTCCGTATGTAGGGAAGAAGAGTACCAGTGCCGAA
A
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21094:1367..2267+

>mRNA_L-elsbetiae_contig21094.6397.1 ID=mRNA_L-elsbetiae_contig21094.6397.1|Name=mRNA_L-elsbetiae_contig21094.6397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1194bp|location=Sequence derived from alignment at L-elsbetiae_contig21094:1367..2267+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGAGACCGAACAGTCTCAAGCGGCACAAACACCAAAAACAACACGT
ACATGATACATGGGGGAACCTTACCCTCACTTGGCGACACTATCGCCCCG
ACCACACGTCACACAACCAACTAACGCCGTACACACTCTCATGCTTGAGC
ATTCACTTCGCACAAGCCGCCCCAGCAGCTCTCGGCCTGCTCAGTTTCGC
GCCTCCGGCGAGAAGACAAAAACAAGCCATATTCTCTCGTCTAAACCCAA
CGTTTAACACAACAAGCGCCCTCGCCCAACCACTTCGAAAATCACGCCGT
CGTCCTGACTTCATTGCCCACAGAGCAAACACCAACCACAAGCTAATGAT
GACAAAATATAGGAGACATGTATATGTATATGTAGTTTCTGTAAACGACC
GAGGCCACCAGACGCCCTTCCCACGTTACCCTCTCCGCAACTCCCGTATC
CGTACACATCGCGACCGGAAGGTCGTGTCAGCGCTCCACTTGCCCGCTCT
TTCTCTCCATTGCGATAGGTCTTGTAGTAGACGACACAAGATACCAACCC
CCCCGCGCCCTGGACAGATTTTCAAAGATCTATTCCTCCGTATGTAGATG
CCGAGACCGAACAGTCTCAAGCGGCACAAACACCAAAAACAACACGTACA
TGATACATGGGGGAACCTTACCCTCACTTGGCGACACTATCGCCCCGACC
ACACGTCACACAACCAACTAACGCCGTACACACTCTCATGCTTGAGCATT
CACTTCGCACAAGCCGCCCCAGCAGCTCTCGGCCTGCTCAGTTTCGCGCC
TCCGGCGAGAAGACAAAAACAAGCCATATTCTCTCGTCTAAACCCAACGT
TTAACACAACAAGCGCCCTCGCCCAACCACTTCGAAAATCACGCCGTCGT
CCTGACTTCATTGCCCACAGAGCAAACACCAACCACAAGCTAATGATGAC
AAAATATAGGAGACATGTATATGTATATGTAGTTTCTGTAAACGACCGAG
GCCACCAGACGCCCTTCCCACGTTACCCTCTCCGCAACTCCCGTATCCGT
ACACATCGCGACCGGAAGGTCGTGTCAGCGCTCCACTTGCCCGCTCTTTC
TCTCCATTGCGATAGGTCTTGTAGTAGACGACACAAGATACCAACCCCCC
CGCGCCCTGGACAGATTTTCAAAGATCTATTCCTCCGTATGTAG
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