mRNA_L-elsbetiae_contig21091.6396.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21091.6396.1
Unique NamemRNA_L-elsbetiae_contig21091.6396.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21091.6396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21091contigL-elsbetiae_contig21091:1232..1813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size582
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815864.6830678-CDS-L-elsbetiae_contig21091:1231..16091622815864.6830678-CDS-L-elsbetiae_contig21091:1231..1609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21091 1232..1609 +
1691683154.6309757-CDS-L-elsbetiae_contig21091:1231..16091691683154.6309757-CDS-L-elsbetiae_contig21091:1231..1609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21091 1232..1609 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815864.6970246-UTR-L-elsbetiae_contig21091:1609..18131622815864.6970246-UTR-L-elsbetiae_contig21091:1609..1813Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21091 1610..1813 +
1691683154.6435473-UTR-L-elsbetiae_contig21091:1609..18131691683154.6435473-UTR-L-elsbetiae_contig21091:1609..1813Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21091 1610..1813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21091.6396.1prot_L-elsbetiae_contig21091.6396.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21091 1232..1609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21091.6396.1

>prot_L-elsbetiae_contig21091.6396.1 ID=prot_L-elsbetiae_contig21091.6396.1|Name=mRNA_L-elsbetiae_contig21091.6396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
GPLPVSRRGPTHLKTYAALAPAVGVAAAAAATTRCWTRGGCCFTKPRFSA
PASPSNSPTAAAAAASSPSSFLPSLMHSSSGCRLGGLCACLSLRNKNGVE
VGTGGGFSFRAGPNKKQRHIPVTLC*
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mRNA from alignment at L-elsbetiae_contig21091:1232..1813+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21091.6396.1 ID=mRNA_L-elsbetiae_contig21091.6396.1|Name=mRNA_L-elsbetiae_contig21091.6396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig21091:1232..1813+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCCCCTCCCGGTGTCGCGGCGAGGCCCGACCCATCTGAAAACATATGC
CGCCCTTGCTCCCGCCGTGGGGGTGGCTGCCGCCGCCGCCGCCACCACTC
GATGCTGGACCCGGGGGGGCTGTTGTTTTACGAAGCCACGTTTTTCCGCC
CCCGCCTCGCCGTCAAATTCTCCCACCGCCGCTGCCGCCGCCGCTAGCTC
TCCCTCGTCTTTTCTGCCGTCCCTGATGCACTCCTCCAGCGGCTGTCGTC
TCGGCGGTCTTTGCGCCTGCTTGTCGTTGAGGAACAAAAATGGTGTGGAA
GTGGGGACAGGTGGAGGTTTCAGCTTCAGAGCTGGCCCGAACAAGAAGCA
GAGGCACATACCAGTAACCCTATGTTAGAAGAGAACGGCCAAGTCAGCAA
CATTTGTTTGCTAAAATGAACGATATAACCAGTTGACTGCAGCGTATGCG
GGAGCTACAACACACCTCTAGGCGATCGCCTCCCGTCCAAGACTGTGAAA
GTATTTGTTGAGAAGATAGCTCGAGCGTTGGTGAGGACTACACCGCCACG
AAGGTTTTTTTCCTTCCTCTGAAACCAGGCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21091:1232..1813+

>mRNA_L-elsbetiae_contig21091.6396.1 ID=mRNA_L-elsbetiae_contig21091.6396.1|Name=mRNA_L-elsbetiae_contig21091.6396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig21091:1232..1813+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCCCCTCCCGGTGTCGCGGCGAGGCCCGACCCATCTGAAAACATATGC
CGCCCTTGCTCCCGCCGTGGGGGTGGCTGCCGCCGCCGCCGCCACCACTC
GATGCTGGACCCGGGGGGGCTGTTGTTTTACGAAGCCACGTTTTTCCGCC
CCCGCCTCGCCGTCAAATTCTCCCACCGCCGCTGCCGCCGCCGCTAGCTC
TCCCTCGTCTTTTCTGCCGTCCCTGATGCACTCCTCCAGCGGCTGTCGTC
TCGGCGGTCTTTGCGCCTGCTTGTCGTTGAGGAACAAAAATGGTGTGGAA
GTGGGGACAGGTGGAGGTTTCAGCTTCAGAGCTGGCCCGAACAAGAAGCA
GAGGCACATACCAGTAACCCTATGTTAGGGTCCCCTCCCGGTGTCGCGGC
GAGGCCCGACCCATCTGAAAACATATGCCGCCCTTGCTCCCGCCGTGGGG
GTGGCTGCCGCCGCCGCCGCCACCACTCGATGCTGGACCCGGGGGGGCTG
TTGTTTTACGAAGCCACGTTTTTCCGCCCCCGCCTCGCCGTCAAATTCTC
CCACCGCCGCTGCCGCCGCCGCTAGCTCTCCCTCGTCTTTTCTGCCGTCC
CTGATGCACTCCTCCAGCGGCTGTCGTCTCGGCGGTCTTTGCGCCTGCTT
GTCGTTGAGGAACAAAAATGGTGTGGAAGTGGGGACAGGTGGAGGTTTCA
GCTTCAGAGCTGGCCCGAACAAGAAGCAGAGGCACATACCAGTAACCCTA
TGTTAG
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