mRNA_L-elsbetiae_contig2109.6392.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2109.6392.1
Unique NamemRNA_L-elsbetiae_contig2109.6392.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2109.6392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2109contigL-elsbetiae_contig2109:1172..2752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size386
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2109.6392.1prot_L-elsbetiae_contig2109.6392.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2109 1204..2752 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815864.308441-UTR-L-elsbetiae_contig2109:1171..12031622815864.308441-UTR-L-elsbetiae_contig2109:1171..1203Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2109 1172..1203 +
1691683154.3771703-UTR-L-elsbetiae_contig2109:1171..12031691683154.3771703-UTR-L-elsbetiae_contig2109:1171..1203Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2109 1172..1203 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815864.3214395-CDS-L-elsbetiae_contig2109:1203..15121622815864.3214395-CDS-L-elsbetiae_contig2109:1203..1512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2109 1204..1512 +
1691683154.38611-CDS-L-elsbetiae_contig2109:1203..15121691683154.38611-CDS-L-elsbetiae_contig2109:1203..1512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2109 1204..1512 +
1622815864.3372626-CDS-L-elsbetiae_contig2109:2707..27521622815864.3372626-CDS-L-elsbetiae_contig2109:2707..2752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2109 2708..2752 +
1691683154.3953567-CDS-L-elsbetiae_contig2109:2707..27521691683154.3953567-CDS-L-elsbetiae_contig2109:2707..2752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2109 2708..2752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2109.6392.1

>prot_L-elsbetiae_contig2109.6392.1 ID=prot_L-elsbetiae_contig2109.6392.1|Name=mRNA_L-elsbetiae_contig2109.6392.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MPAADLRRSRHQCGGVIVVCSVLAAVRSGVVGFQVAVPPRSCSNRERGAS
GLCLGRTHQARQRAPAGASPYTEGDRCLRQWGLALLSEREDGADGGGEAQ
QVLPPMEPQGVPAATATA
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mRNA from alignment at L-elsbetiae_contig2109:1172..2752+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2109.6392.1 ID=mRNA_L-elsbetiae_contig2109.6392.1|Name=mRNA_L-elsbetiae_contig2109.6392.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1581bp|location=Sequence derived from alignment at L-elsbetiae_contig2109:1172..2752+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGCGCACAGGTGCAGCTGGGGCCATTCAACATGCCAGCGGCAGACTTG
AGGAGATCGAGACATCAATGTGGTGGTGTGATCGTGGTATGTTCCGTGCT
GGCAGCAGTTAGATCTGGTGTGGTTGGCTTCCAAGTCGCCGTACCTCCAA
GGAGTTGCAGCAACAGAGAACGTGGGGCCTCCGGCCTCTGCCTAGGGCGG
ACTCACCAAGCAAGACAGCGGGCCCCAGCTGGTGCCTCCCCCTACACGGA
GGGTGACCGGTGCTTGCGGCAGTGGGGGTTGGCGTTGTTGTCCGAGCGCG
AGGACGGCGCTGATGGTGGTGGAGAAGCACAGCAGGTTTTGGTGAGAGCG
ACACGTAGACTAAACATGCTGTGAGAGTTCAACATGACAGCAATGCCGAG
GGAGGAAACACAGCTTACTCTGTATTCGTGTGGGTGGACCGACTGTAGGG
CCAAGCACCTCACGATGAATACGTGCAACCACCCCTTTACTGCTGCTGGA
GGCTGTCTTTGCAAGAGAGCTTCATCATGTTGTCATGCTGCATGACGTCA
TGTATATATCACGGCTATAGGCTGGACCCACGCGGGAACTGCAGAGCCTC
TCGCATCTTATCATATGCGCTGTGTGCCGCGCAAAGGCAGACTAGCGGTG
TGTGCAAAGACATCACAGATAGGCTTCCTACTTGTCAGAAAGCAAGCAGT
AACGCCTTTCACGGCCAAATCCACGCGGGACGTCTCAGAAATATCTACCT
GTACCCCGTATGAGTGGTGCCAGTAGGTCGTCCTGGTGTTTTGGCTTGTT
CGGTCTGCGGGGTGTAAAACGGTTGTCCAGGCTCCACGACCCTATAGTTG
GACTGACGGCGCCCCAAGCCTCGAAGCTTATTCAGTCAAACGTTTCGAAT
GCGTGCCAGAAAAATAAAAGGAGACAATGCAGCAGCAGCAGCTGTACATC
ATCAGTAGCCGAGGAGGAACTCTCAAAGGGTTGCTCATCCGGCACGGAGA
GGGAGAGTAGCAACCTCACGTTCGGCACGGGTGTTGAGTGTGTGTCCTGT
GAAGGGAATCGAGGGATGACACCTCAGGAGGAAATGAGGAGAGCGGAGAT
AGGTACATGACACTGCTGCGCTCTAGTTTGTGACGCCATGTAGAGGAACA
CGCAGAACGAGCGTTGTACATAGTCTCACCTATTGGATAATGGTAAGCAA
GAAGCCGAAGTAGAAGGGGGAACAGTTTGCCAGAACGTTCTTGGGGGTGA
AATACACCACGCGAGCATCACAGCGCTCGGTATTGGCGGCGCCTTGTTGT
GCACGCGCGATAAAGGCCGTTGAATATTCCTCTCGAAAGAGGTGCGTGGG
GGAGGGGGCAGTGACCAGTATATTCAGCGAGCGCGATTACCCCCGCTGTG
CAACAAACGCCCGTGAGGCCCCAAACGGTTTTCTGGAATCGCGTGTGCCT
CTTCCGACGAGACAGCACGATGCAGAATTGCTGAGCTCTCTACATCGTTT
GACGATCACCGCGCCCGCCTCCCTCAACAACGGCAGCCTCCCATGGAGCC
TCAAGGGGTACCGGCGGCGACAGCGACAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2109:1172..2752+

>mRNA_L-elsbetiae_contig2109.6392.1 ID=mRNA_L-elsbetiae_contig2109.6392.1|Name=mRNA_L-elsbetiae_contig2109.6392.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig2109:1172..2752+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCAGCGGCAGACTTGAGGAGATCGAGACATCAATGTGGTGGTGTGAT
CGTGGTATGTTCCGTGCTGGCAGCAGTTAGATCTGGTGTGGTTGGCTTCC
AAGTCGCCGTACCTCCAAGGAGTTGCAGCAACAGAGAACGTGGGGCCTCC
GGCCTCTGCCTAGGGCGGACTCACCAAGCAAGACAGCGGGCCCCAGCTGG
TGCCTCCCCCTACACGGAGGGTGACCGGTGCTTGCGGCAGTGGGGGTTGG
CGTTGTTGTCCGAGCGCGAGGACGGCGCTGATGGTGGTGGAGAAGCACAG
CAGGTTTTGATGCCAGCGGCAGACTTGAGGAGATCGAGACATCAATGTGG
TGGTGTGATCGTGGTATGTTCCGTGCTGGCAGCAGTTAGATCTGGTGTGG
TTGGCTTCCAAGTCGCCGTACCTCCAAGGAGTTGCAGCAACAGAGAACGT
GGGGCCTCCGGCCTCTGCCTAGGGCGGACTCACCAAGCAAGACAGCGGGC
CCCAGCTGGTGCCTCCCCCTACACGGAGGGTGACCGGTGCTTGCGGCAGT
GGGGGTTGGCGTTGTTGTCCGAGCGCGAGGACGGCGCTGATGGTGGTGGA
GAAGCACAGCAGGTTTTGCCTCCCATGGAGCCTCAAGGGGTACCGGCGGC
GACAGCGACAGCGCCTCCCATGGAGCCTCAAGGGGTACCGGCGGCGACAG
CGACAGCG
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