mRNA_L-elsbetiae_contig2107.6388.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2107.6388.1
Unique NamemRNA_L-elsbetiae_contig2107.6388.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2107.6388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2107contigL-elsbetiae_contig2107:21571..21917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size347
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815864.023919-CDS-L-elsbetiae_contig2107:21570..219151622815864.023919-CDS-L-elsbetiae_contig2107:21570..21915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2107 21571..21915 +
1691683154.2183375-CDS-L-elsbetiae_contig2107:21570..219151691683154.2183375-CDS-L-elsbetiae_contig2107:21570..21915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2107 21571..21915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2107.6388.1prot_L-elsbetiae_contig2107.6388.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2107 21571..21915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2107.6388.1

>prot_L-elsbetiae_contig2107.6388.1 ID=prot_L-elsbetiae_contig2107.6388.1|Name=mRNA_L-elsbetiae_contig2107.6388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
RDRFERERVQEHARAQRLHSRRVQAVAALPTPGRIPSPPPMLFQTDARLA
NSVAVERARIAVAHNEILSAQLRQMTASVLNNSGTPAASAPAFAMSDLRV
ATGDPQSTGRVYPSS
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mRNA from alignment at L-elsbetiae_contig2107:21571..21917+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2107.6388.1 ID=mRNA_L-elsbetiae_contig2107.6388.1|Name=mRNA_L-elsbetiae_contig2107.6388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=347bp|location=Sequence derived from alignment at L-elsbetiae_contig2107:21571..21917+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGATCGTTTCGAACGTGAGCGCGTGCAGGAACACGCGCGTGCTCAACG
ACTGCATTCTCGCCGTGTGCAGGCAGTTGCTGCTTTACCCACACCAGGAC
GCATACCCTCCCCACCCCCCATGCTTTTCCAAACAGATGCGCGCCTGGCT
AATTCAGTCGCCGTTGAAAGAGCTCGCATTGCTGTTGCTCATAATGAGAT
CCTTTCCGCCCAATTGCGCCAGATGACGGCTTCAGTTCTGAACAACTCTG
GTACTCCTGCCGCTTCTGCGCCCGCCTTTGCCATGTCGGATCTGCGTGTT
GCAACCGGTGACCCTCAATCCACTGGCAGAGTGTACCCATCGTCTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2107:21571..21917+

>mRNA_L-elsbetiae_contig2107.6388.1 ID=mRNA_L-elsbetiae_contig2107.6388.1|Name=mRNA_L-elsbetiae_contig2107.6388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig2107:21571..21917+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGATCGTTTCGAACGTGAGCGCGTGCAGGAACACGCGCGTGCTCAACG
ACTGCATTCTCGCCGTGTGCAGGCAGTTGCTGCTTTACCCACACCAGGAC
GCATACCCTCCCCACCCCCCATGCTTTTCCAAACAGATGCGCGCCTGGCT
AATTCAGTCGCCGTTGAAAGAGCTCGCATTGCTGTTGCTCATAATGAGAT
CCTTTCCGCCCAATTGCGCCAGATGACGGCTTCAGTTCTGAACAACTCTG
GTACTCCTGCCGCTTCTGCGCCCGCCTTTGCCATGTCGGATCTGCGTGTT
GCAACCGGTGACCCTCAATCCACTGGCAGAGTGTACCCATCGTCTCGCGA
TCGTTTCGAACGTGAGCGCGTGCAGGAACACGCGCGTGCTCAACGACTGC
ATTCTCGCCGTGTGCAGGCAGTTGCTGCTTTACCCACACCAGGACGCATA
CCCTCCCCACCCCCCATGCTTTTCCAAACAGATGCGCGCCTGGCTAATTC
AGTCGCCGTTGAAAGAGCTCGCATTGCTGTTGCTCATAATGAGATCCTTT
CCGCCCAATTGCGCCAGATGACGGCTTCAGTTCTGAACAACTCTGGTACT
CCTGCCGCTTCTGCGCCCGCCTTTGCCATGTCGGATCTGCGTGTTGCAAC
CGGTGACCCTCAATCCACTGGCAGAGTGTACCCATCGTCT
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