mRNA_L-elsbetiae_contig21040.6381.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21040.6381.1
Unique NamemRNA_L-elsbetiae_contig21040.6381.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21040.6381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21040contigL-elsbetiae_contig21040:287..1981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size605
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21040.6381.1prot_L-elsbetiae_contig21040.6381.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21040 1588..1953 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815863.6900368-UTR-L-elsbetiae_contig21040:286..4391622815863.6900368-UTR-L-elsbetiae_contig21040:286..439Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21040 287..439 +
1691683154.0381696-UTR-L-elsbetiae_contig21040:286..4391691683154.0381696-UTR-L-elsbetiae_contig21040:286..439Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21040 287..439 +
1622815863.7023933-UTR-L-elsbetiae_contig21040:1529..15871622815863.7023933-UTR-L-elsbetiae_contig21040:1529..1587Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21040 1530..1587 +
1691683154.049032-UTR-L-elsbetiae_contig21040:1529..15871691683154.049032-UTR-L-elsbetiae_contig21040:1529..1587Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21040 1530..1587 +
1622815863.7314706-UTR-L-elsbetiae_contig21040:1953..19811622815863.7314706-UTR-L-elsbetiae_contig21040:1953..1981Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21040 1954..1981 +
1691683154.0723574-UTR-L-elsbetiae_contig21040:1953..19811691683154.0723574-UTR-L-elsbetiae_contig21040:1953..1981Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21040 1954..1981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815863.7182484-CDS-L-elsbetiae_contig21040:1587..19531622815863.7182484-CDS-L-elsbetiae_contig21040:1587..1953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21040 1588..1953 +
1691683154.060035-CDS-L-elsbetiae_contig21040:1587..19531691683154.060035-CDS-L-elsbetiae_contig21040:1587..1953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21040 1588..1953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21040.6381.1

>prot_L-elsbetiae_contig21040.6381.1 ID=prot_L-elsbetiae_contig21040.6381.1|Name=mRNA_L-elsbetiae_contig21040.6381.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
MRAMERSGVFDTLNPVGDEGGDEEREAQGVGGESEAEEPRAVPPLALTNT
DTNTVATIPATNSNGAKIVVGTSAAAAAPRRDGESGGKDGGRTENSDVDS
PGRRVAGVGNGGESPHQHQQQ*
back to top

mRNA from alignment at L-elsbetiae_contig21040:287..1981+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21040.6381.1 ID=mRNA_L-elsbetiae_contig21040.6381.1|Name=mRNA_L-elsbetiae_contig21040.6381.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1695bp|location=Sequence derived from alignment at L-elsbetiae_contig21040:287..1981+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGTACCAATATAAGGTTTGGGGCGCTAGCACGCGCCCCCGCTTGTATT
GTAAGCGCATCCAAGGTATTGTAATGGCGTTCCGACACCTGAGACCCAGG
CAGCAGCGCCCACCAAGAGGAGACTGGTGACCGACATCTCCATCGAGACC
CAGGTGAGCGTGGAGTGTAATTGGAAAACACAAACAGCAGTTGTTTTTTT
AACATCTAATAGATAGATATTTATAGAGATGTAGATATACTTACATACAC
TTCCGAAAAGCACGTCAGTAGGAGGATAACATGGAGTGACATGAAGGATG
TGCAAGATAAGTGCCCTCCTCCTTGTATTGACGGCGCTGCTGCGAGTGTA
GCCGCGGGCTCAACGATACGCATACATGGAGTGCCTCGCAGGGTACCCAT
AGCTACCAATCTACACATGCTGCATCTACACATCTACACAGCTGCTAGCA
GTTGGCTCGCAATTGACCCCTTCGGCGCGTTCACCATCTCGGCGAATACA
AGCGGAGTTTCAAGCGAGAGCCAATTTCCAAAACAAAACTGTTTGGTAAA
GGTAGATGTAAAAAAGTACGTCGTGAGATACATAGCTTGATAGAAAGTCC
ATCGCTCTCACAAGAGAGAAAGGTTTAAACCACAGCAGAGGAAGCGCGAG
TAGCATAGGGGGAAGCACGAGTAGCAATGCACAGACGCACGCGAGGGACA
CCTCGGGGTAGCAACGCCGAGAGTTTCCGGATGGAAATAAGAAATAAGAG
CCCTCTCAGACGAAATGCGCCAAGAAAAAGAGAGACAAACAGAGAGAGAG
AAAGACACTGAGAGAGGAGGGAAAGGGAAACAGAGGTAAGAGAGAGAAGC
GAATGCTCGAGTGCACTGTGAAGTGCACTGCAGGCAGCCACACGCTAGGG
GCACCTCGGGAGAGAAAGAGAGTAGAGAAAGCAGATGAAGGATGCAGATC
GGAGTTTTCAGAATTCCGGACAGAACCAAACGAAGCCACCACAGCGATGA
CAGGGAGCGACGCTCAGAATAATTGTAAATTGGAAAAGACTTATCGTGCT
AGTTTAAGAGTGTCGCGCCAGTCAGTCACGTGCCGGAGAAGGGTAGGCTT
GCCAAGTCTTGCAGCCATCAAGGTTTTGGTCTGAAACACGCTTTTCTTAC
CTCCCCTCCCCTCCCCTTCCGCCGACTGCCCTTTCTATTTTCGGCTACTA
CTGTTTGTTGCTGGCGTGTGGCATATGACGTGTGGCATGGCAGGACAAGC
TCGCGCTGGAGGTCGCCGGGGAGACCATCGAGGCTGTCGGTGGTGGGCGT
GATGCGCGCCATGGAGAGATCGGGGGTCTTCGACACCCTTAACCCCGTGG
GAGACGAGGGGGGGGACGAGGAACGGGAAGCGCAGGGTGTGGGAGGAGAG
AGCGAGGCCGAAGAGCCACGAGCAGTCCCGCCGTTGGCGCTAACCAACAC
CGACACCAACACGGTGGCGACGATCCCCGCCACCAACAGCAATGGCGCGA
AGATAGTGGTCGGTACTTCCGCCGCAGCCGCCGCGCCAAGGAGAGATGGA
GAAAGTGGCGGGAAGGACGGCGGCAGGACGGAAAACTCTGATGTGGATTC
GCCTGGACGGAGGGTTGCTGGGGTCGGGAACGGGGGAGAGTCGCCGCATC
AGCACCAGCAGCAGTAGCAACAACACCAGTAGTTGTAGCAGTGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig21040:287..1981+

>mRNA_L-elsbetiae_contig21040.6381.1 ID=mRNA_L-elsbetiae_contig21040.6381.1|Name=mRNA_L-elsbetiae_contig21040.6381.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig21040:287..1981+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCGCCATGGAGAGATCGGGGGTCTTCGACACCCTTAACCCCGTGGG
AGACGAGGGGGGGGACGAGGAACGGGAAGCGCAGGGTGTGGGAGGAGAGA
GCGAGGCCGAAGAGCCACGAGCAGTCCCGCCGTTGGCGCTAACCAACACC
GACACCAACACGGTGGCGACGATCCCCGCCACCAACAGCAATGGCGCGAA
GATAGTGGTCGGTACTTCCGCCGCAGCCGCCGCGCCAAGGAGAGATGGAG
AAAGTGGCGGGAAGGACGGCGGCAGGACGGAAAACTCTGATGTGGATTCG
CCTGGACGGAGGGTTGCTGGGGTCGGGAACGGGGGAGAGTCGCCGCATCA
GCACCAGCAGCAGTAGATGCGCGCCATGGAGAGATCGGGGGTCTTCGACA
CCCTTAACCCCGTGGGAGACGAGGGGGGGGACGAGGAACGGGAAGCGCAG
GGTGTGGGAGGAGAGAGCGAGGCCGAAGAGCCACGAGCAGTCCCGCCGTT
GGCGCTAACCAACACCGACACCAACACGGTGGCGACGATCCCCGCCACCA
ACAGCAATGGCGCGAAGATAGTGGTCGGTACTTCCGCCGCAGCCGCCGCG
CCAAGGAGAGATGGAGAAAGTGGCGGGAAGGACGGCGGCAGGACGGAAAA
CTCTGATGTGGATTCGCCTGGACGGAGGGTTGCTGGGGTCGGGAACGGGG
GAGAGTCGCCGCATCAGCACCAGCAGCAGTAG
back to top