mRNA_L-elsbetiae_contig2104.6380.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2104.6380.1
Unique NamemRNA_L-elsbetiae_contig2104.6380.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig2104.6380.1 vs. uniprot
Match: D8LE07_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE07_ECTSI)

HSP 1 Score: 417 bits (1072), Expect = 1.010e-143
Identity = 221/243 (90.95%), Postives = 230/243 (94.65%), Query Frame = 1 
Query:    1 KFSKWADRSSGVNPFLPFPPRLPKSLCLRVPVFLLRLCLALVRVPVALSLLMTASVGGALSRYLPVVMAVWAAERAMNGFSSDQVWGTRFLLAIPLLVFAQFGVTVFRVFLVRIPLRLALSVMGIKLEEKHADLRRLGLRSPGAEPPSGRPGGGIFRGDIIVRNSCSFLEVLYLQSRVTPQFTAIAAGGESAPAKLMRIRFVSAVLGSFRGPPAAGALK--ETLRDIITSPRGRTRSIVVAPE 723
            KFSKWADRSSGVNPF+PFPPR PKSLCL VPV+LLRLCLALVR+PVALSLLMTASVGGALSRYLPV+MA WAAERAMNGFSSDQVW TRFLLAIPLLVFAQFG +VFRVFLVRIPLRLALSVMGIKLEEKHADLRRLGLRSP AEPPSGRPGGGI+RGDIIVRNSC FLEVLYLQSRVTPQFTAIAAGG SAP  L RIRFVSAVLGSFRGPPAAGALK  +TLRDI+T+PRGRTRSIVVAPE
Sbjct:    3 KFSKWADRSSGVNPFVPFPPRSPKSLCLLVPVYLLRLCLALVRMPVALSLLMTASVGGALSRYLPVLMAFWAAERAMNGFSSDQVWSTRFLLAIPLLVFAQFGASVFRVFLVRIPLRLALSVMGIKLEEKHADLRRLGLRSPAAEPPSGRPGGGIYRGDIIVRNSCCFLEVLYLQSRVTPQFTAIAAGGGSAPVNLTRIRFVSAVLGSFRGPPAAGALKKEQTLRDIVTAPRGRTRSIVVAPE 245
[Close]
BLAST of mRNA_L-elsbetiae_contig2104.6380.1 vs. uniprot
Match: A0A4D9CRK5_9STRA (PlsC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRK5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.510e-14
Identity = 87/259 (33.59%), Postives = 131/259 (50.58%), Query Frame = 1 
Query:    1 KFSKWADRSSGVNPFLPFPPRLPKSLCLRVPVFLLRLCLALVRVPVALSLLMTASVGGALSRYLP-----VVMAVWAAERAMNGFSSDQVW----GTRFLLAIPLLVFAQFGVTVFRVF---LVRIPLRLALSVMGIKLEEKHADLRRLGLRSPGAEPPSGRPGGGIFRGDIIVRNSCSFLEVLYLQSRVTPQFTAIAAGGESAPAKLMRIRFVSAVLGSFRG---PPAA---GALKETLRDIITSPRGRTRSIVVAPE 723
            KF+KWAD+ +G+NPFLP   R   SL  +V   LL + L  VR P+   +L+T +   ALS         +  A++     ++G  S  +      T F L + L       V + R+F    +R P+ L LS++G+   E+HA+LR+LGLR PG  P   R G  I  GDI++ N  S LEVL+  SR  P F+A+A       A + + R ++ +   +R    PP A   GA  + L  +    + + R++VV PE
Sbjct:    3 KFTKWADKGTGINPFLP-QRRAASSLPSKVASGLLAVVLIAVRPPL---ILLTLAWFFALSLLTKPWFDILTGALFTTYAYLDGGPSKPMTLSPQHTGFFLLV-LGSLTALSVPIRRLFSFLTLRPPMYLLLSILGVSYREQHANLRKLGLRPPGHRPHDSRIGRTIQAGDILLSNHTSPLEVLFFISRFLPAFSALAV------APVAQGRLLTPLQAWWRAGLVPPKAFETGA-GQALSSLAAEAKRQGRAVVVFPE 249
[Close]
BLAST of mRNA_L-elsbetiae_contig2104.6380.1 vs. uniprot
Match: K8YZX9_NANGC (Light harvesting complex protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YZX9_NANGC)

HSP 1 Score: 82.4 bits (202), Expect = 2.330e-14
Identity = 76/196 (38.78%), Postives = 101/196 (51.53%), Query Frame = 1 
Query:    1 KFSKWADRSSGVNPFLPFPPRLPKSLCLRVPVFLLRLCLALVRVPV---------ALSLLMTASVGGALSRYLPVVMAVWAAERAMNGFSSDQVWGTRFLLAIPLLVFAQFGVT-VFRVFLVRIPLRLALSVMGIKLEEKHADLRRLGLRSPGAEPPSGRPGGGIFRGDIIVRNSCSFLEVLYLQSRVTPQFTAIA 558
            KF+KWAD+ +G+NPFLP   R   SL  +V   LL + L  VR+P+         ALSLL T      L+  L    A      +     S Q  G  FLL +  L      +  VF    +R P+ L LS++G+   E+HA+LR+LGLR PG  P   R G  I  GDI++ N  S LEVL+  SR  P F+A+A
Sbjct:   37 KFTKWADKGTGINPFLP-QRRAASSLPSKVASGLLAIVLIAVRLPLILLTLTWFLALSLL-TKPWFDILTGALFTTYAYLDEGPSKPMTLSPQHTGF-FLLVLGSLTALSVPIRRVFSFLTLRPPVYLLLSILGVSYREQHANLRKLGLRPPGHRPHDSRIGRTIQAGDILLSNHTSPLEVLFFISRFLPAFSALA 229
[Close]
BLAST of mRNA_L-elsbetiae_contig2104.6380.1 vs. uniprot
Match: A0A835YJM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJM5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.210e-12
Identity = 72/189 (38.10%), Postives = 99/189 (52.38%), Query Frame = 1 
Query:    1 KFSKWADRSSGVNPFLPFPPRLPKSLCLRVPVFLLRLCLALVRVPVALSLLMTASVGGALSRYLPVVMAVWAAERAMNGFSSDQVWGTRFLLAIPLLVFAQFGVT-VFRVFLVRIPLRLALSVMGIKLEEKHADLRRLGLRS-PGAEPPSGRPGGGIFR-GDIIVRNSCSFLEVLYLQSRVTPQFTAIA 558
            KF+KW D +SGVNPF+P  PRLP++  L+    LL   LALVR P+    L+   V   L+R + +++   AA      +    V     L+ + L   A   +T + R  +     R AL+V+GI ++E+ A+LRRLGL+     E    R  GG+   GDIIV N  SF EVLYL  R  P F   A
Sbjct:    3 KFTKWQD-ASGVNPFIPPAPRLPRNPLLKGGRLLLGCLLALVRAPLFGLCLLCLFVAERLARPVTLMVLGLAAVATRKHYFEGAV-----LVGLGLTGAAVVPLTRLVRRVMFTFWSRSALAVLGIWVKEQPANLRRLGLQQGTNVEAARKRTWGGLAAPGDIIVSNYTSFAEVLYLMGRADPHFATAA 185
[Close]
BLAST of mRNA_L-elsbetiae_contig2104.6380.1 vs. uniprot
Match: M4BVL6_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVL6_HYAAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.520e-7
Identity = 71/246 (28.86%), Postives = 110/246 (44.72%), Query Frame = 1 
Query:    1 KFSKWADRSSGVNPFLPFPPRLPKSLCLRVPVFLLRLC----LALVRVPVALSLLMTASVGGALSRYLPVVMAVWAAERAMNGFSSDQVWGTRFLLAIPLLVFAQFGVTVFRVFLVRIPLRLALSVMGIKLEEKHADLRRLGLRSPGAEPPSGRPGGGIFRGDIIVRNSCSFLEVLYLQSRVTPQFTAIAAGGESAPAKLMRI-RFVSAVLGSFRGPPAAGALKETLRDIITSPRGRTRSIVVAPE 723
            K+S+WAD ++G+NPF+P   R         PV +L++     LALVR                    LP+V+ V  A   +N             + + +L    F   + +  +  +   L L + G+   E+ A++RRLGL +   +  S +    + RGD++V NS SFLEVLYL  R +P F   A   +S    L+ +   + A+  S   P  A  +K T R I    R  +  IV+ PE
Sbjct:    3 KYSRWADLTTGINPFVPQRRRFASGW----PVTILQVTCGSLLALVR--------------------LPLVLVVTVALVVVN-------------IVVSILTVIPFVGRLLKRLIEYLLCSLLLLLFGVFTSEEAANMRRLGLVT--GKTKSSKSSSRVGRGDVVVCNSTSFLEVLYLAKRFSPVFV-YAIDEKSDTGNLVHVCGLLEALYRSLTMPVTAERVKPT-RKIADVVRRASGPIVLLPE 207
[Close]
BLAST of mRNA_L-elsbetiae_contig2104.6380.1 vs. uniprot
Match: A0A3M6VHU1_9STRA (Uncharacterized protein n=3 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHU1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 8.580e-7
Identity = 70/244 (28.69%), Postives = 111/244 (45.49%), Query Frame = 1 
Query:    1 KFSKWADRSSGVNPFLPFPPRLPKSLCLRVPVFLLRLCLALVRVPVALSLLMTASVGGALSRYLPVVMAVWAAERAMNGFSSDQVWGTRFLLAIPLLVFAQFGVTVFRVFLVRIPLRLALSVMGIKLEEKHADLRRLGLRSPGAEPPSGRPGGGIFRGDIIVRNSCSFLEVLYLQSRVTPQFTAIAAGGESAPAKLMRI-RFVSAVLGSFRGPPAAGALKET--LRDIITSPRGRTRSIVVAPE 723
            K+S+WAD S+G+NPF+P   R      + +        LAL+R P+     ++  V G L+  + ++  +    R +   S    W    L ++ LL+F                        G+   E+ A+ RRLGL +  A+  S +    + RGD++V N  SFLE+LYL  R +P F  IA G +S    L+ +   + A+  S   P +A  +K T  L D++    G    +VV PE
Sbjct:    3 KYSRWADLSTGINPFVPQRRRFTSGWPITILQVTSGSLLALIRFPLVF---VSTVVLGLLNIVVSMLAVIPFLGRLLKRSSE---W---LLCSLLLLLF------------------------GVYTMEESANTRRLGLSTLKAK--SSKESSRVGRGDVVVCNYTSFLEILYLSKRFSPVFV-IATGVKSNDESLVHVCGLMEALYWSLAMPVSAERVKPTRKLADVVRRASG---PVVVLPE 207
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2104.6380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LE07_ECTSI1.010e-14390.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CRK5_9STRA1.510e-1433.59PlsC domain-containing protein n=2 Tax=Monodopsida... [more]
K8YZX9_NANGC2.330e-1438.78Light harvesting complex protein (Fragment) n=1 Ta... [more]
A0A835YJM5_9STRA3.210e-1238.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
M4BVL6_HYAAE3.520e-728.86Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A3M6VHU1_9STRA8.580e-728.69Uncharacterized protein n=3 Tax=Peronospora effusa... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2104contigL-elsbetiae_contig2104:12646..19355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score423.3
Seed ortholog evalue7.5e-116
Seed eggNOG ortholog2880.D8LE07
Hectar predicted targeting categoryother localisation
EggNOG OGs28MBJ@1,2QTUZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004520.1
Exons7
Model size726
Cds size723
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815863.5064404-CDS-L-elsbetiae_contig2104:12645..128301622815863.5064404-CDS-L-elsbetiae_contig2104:12645..12830Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2104 12646..12830 +
1691683153.9530644-CDS-L-elsbetiae_contig2104:12645..128301691683153.9530644-CDS-L-elsbetiae_contig2104:12645..12830Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2104 12646..12830 +
1622815863.5171144-CDS-L-elsbetiae_contig2104:13669..137751622815863.5171144-CDS-L-elsbetiae_contig2104:13669..13775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2104 13670..13775 +
1691683153.9727106-CDS-L-elsbetiae_contig2104:13669..137751691683153.9727106-CDS-L-elsbetiae_contig2104:13669..13775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2104 13670..13775 +
1622815863.5286546-CDS-L-elsbetiae_contig2104:15622..157501622815863.5286546-CDS-L-elsbetiae_contig2104:15622..15750Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2104 15623..15750 +
1691683153.9821022-CDS-L-elsbetiae_contig2104:15622..157501691683153.9821022-CDS-L-elsbetiae_contig2104:15622..15750Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2104 15623..15750 +
1622815863.541249-CDS-L-elsbetiae_contig2104:16672..167631622815863.541249-CDS-L-elsbetiae_contig2104:16672..16763Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2104 16673..16763 +
1691683154.0003126-CDS-L-elsbetiae_contig2104:16672..167631691683154.0003126-CDS-L-elsbetiae_contig2104:16672..16763Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2104 16673..16763 +
1622815863.554122-CDS-L-elsbetiae_contig2104:17355..174241622815863.554122-CDS-L-elsbetiae_contig2104:17355..17424Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2104 17356..17424 +
1691683154.0099316-CDS-L-elsbetiae_contig2104:17355..174241691683154.0099316-CDS-L-elsbetiae_contig2104:17355..17424Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2104 17356..17424 +
1622815863.56845-CDS-L-elsbetiae_contig2104:18132..182131622815863.56845-CDS-L-elsbetiae_contig2104:18132..18213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2104 18133..18213 +
1691683154.018693-CDS-L-elsbetiae_contig2104:18132..182131691683154.018693-CDS-L-elsbetiae_contig2104:18132..18213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2104 18133..18213 +
1622815863.5802894-CDS-L-elsbetiae_contig2104:19291..193541622815863.5802894-CDS-L-elsbetiae_contig2104:19291..19354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2104 19292..19354 +
1691683154.0275276-CDS-L-elsbetiae_contig2104:19291..193541691683154.0275276-CDS-L-elsbetiae_contig2104:19291..19354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2104 19292..19354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2104.6380.1prot_L-elsbetiae_contig2104.6380.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2104 12646..19354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2104.6380.1

>prot_L-elsbetiae_contig2104.6380.1 ID=prot_L-elsbetiae_contig2104.6380.1|Name=mRNA_L-elsbetiae_contig2104.6380.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp
KFSKWADRSSGVNPFLPFPPRLPKSLCLRVPVFLLRLCLALVRVPVALSL
LMTASVGGALSRYLPVVMAVWAAERAMNGFSSDQVWGTRFLLAIPLLVFA
QFGVTVFRVFLVRIPLRLALSVMGIKLEEKHADLRRLGLRSPGAEPPSGR
PGGGIFRGDIIVRNSCSFLEVLYLQSRVTPQFTAIAAGGESAPAKLMRIR
FVSAVLGSFRGPPAAGALKETLRDIITSPRGRTRSIVVAPE
back to top

mRNA from alignment at L-elsbetiae_contig2104:12646..19355+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2104.6380.1 ID=mRNA_L-elsbetiae_contig2104.6380.1|Name=mRNA_L-elsbetiae_contig2104.6380.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6710bp|location=Sequence derived from alignment at L-elsbetiae_contig2104:12646..19355+ (Laminarionema elsbetiae ELsaHSoW15)
AAATTCAGCAAGTGGGCCGATCGATCTTCGGGGGTGAACCCTTTCCTCCC
CTTCCCGCCGCGACTGCCCAAGTCTCTCTGCCTGCGCGTCCCGGTGTTCT
TGCTGCGGCTGTGCCTGGCTCTCGTGAGAGTGCCGGTGGCGCTGTCTCTC
CTGATGACCGCTTCTGTCGGAGGGGCCCTGTCGAGGTTTGTTGGATTTTT
TTTTTTTTGTCGTTTTACAAAGGTGTTGGTTTGAGGGTTGACTCGGCGGC
GGCGGAGTGCGTGGAACGAGAGAGGAGGAGAGACTGTCATCAGGTGTTTA
TTGCACGGATGGCGATCGCTTCCTCTAGTGTTGAGTGAATCGCGTGGTTG
CGCACAGAACGCTGTGCCGTCCTTTTTCTGAATTCGCCTTCTGGTATAAC
TACTATATCTAGTATGTATGTATGCATGCATGTACGCTATTGTGCGACTT
CGATTGTTTGTCTTGGAGGTGGTACGCAGGGTAGATAGGTATGCTGTTGT
ATGATAGTCCTACCTTGTGTGGTGGTGTTTGGTTAGCTCGGAGAGAGAGC
AACGAGAGCGTCGCGATCGTCAATCGTCGCCGCCCTGCTTGCTCGACGGG
GTCTCTCCGAAAATCACGTAGTTCGTGTTTTCCTTATTATTCTTACATCC
GAAGTACATACATACATACATACATACATAAATACATACGGGTTCTTAAG
CTGCAGGCGCGACGGGTGCAAACCAAATCACACCCTCGACAATGGACACA
CCAATAGTCCATTGCTTCAACAATATAATACAGGACGAACCTATCGATAG
ACATTGCAGACGACAAATAGTGCTGTCTATTGCGGGAAATCTATTGATTT
GCATCACTCTATTGTCTATTGTCCAGGGTGTGCAGGGCAGAACCATTCGA
AGCGAGCGGCCAGCCAGCCAGCCAAGAGTCGTCCAAGTCTTGTGTTCTGG
GGTGTCTGTATTTGCCTGTTTTGCCGATCCTATGTATGTATGTACATGTA
TTGTATGTATGTAAAACGCGACAGGTATTTGCCGGTGGTGATGGCTGTTT
GGGCGGCCGAGCGGGCGATGAACGGATTCTCTTCGGACCAGGTCTGGGGC
ACGAGGTTCCTGCTCGCGATCCCGCTGCTGGTGAGGAAAAATAAATAAAT
ATATAGAAGTTATATATATACTTCTATATTCTTCCTCTGTCCCATAAGTC
TACTTTTCGGTTATGATTAGACATACCCAAGAGGTGTCTGATGCAGTCGG
CGTTTATTCATTCGGAATCTACGATGTTTTTCGGGTTGAAACCCGTATTT
ATTTATTTTTTGCACGCACCACCATCCTGCATGCATGAACGGCCGAAAAC
AATGTAGTCGGCCCTACAAAACGGCCATATTTGGCCCTTTTCCAGAGAAC
AGGAGAAAATTGAAAACCCGGAAAATGGATGAAAAACGCTACAAGGAGCA
GATTTGGCCTTTTGTTTCGCTTCATCAGTGACATCAGTCATGGACGACTT
CTACGCCTCGCTTGAAAACAGATGACTATGTTATCGTCTAAATTCTAAAT
TTATCACGAAAACAGGCAAATTTCGTGCAAATTTGGCCGAAAACGGTACG
AATCGAGCGAAGTCGGCCAAAATGTGGTCAAATGTGACACGATTATTTTC
AGTAATTACAACTCCTTTTTTTTTTAAAGAGCAGCATCATATCTTTCGCC
TTCCGCCAAACATAACTATAGCATCGTAGGCAACTCCACTGGTGAGATAT
GACCTGCGCCCCATAACCGAGTAGACTTACGGGACAGAGGAAGTATAGCG
TCACTTCGTATATGGGATATGTACTGGTTGAAACCCACGGGGTCCTGGCT
CTCTCATGTGGGCTATTTAGGATCCATTTTTGATTCTCTGATTTATATTT
AACGAAAAAGGCGGCGCAATAAAAAAAAACAGAGAATGTATGTATGCATG
TGGGTGGATCCGTGTCGAAGCACAAAGTCTGACTACGCCAGCTGAAAGCA
GCATTTTGCGTATGCTGCTGCTGCGTATGCTGCGTATGCTGCGTATGCTG
GTGGGGACAGACGCTGAGAATCGATCCTGGGCCAGTCGACCATCGACTGA
TCAGCCCACGAGTTCGTGCAACGAATACTTACAAAAACAAAACCGATGGA
CGCGACTACTGCATACATGAGCAGCACCAAATGCAGCGCACAAACAGCAA
CTTCCGCTTGTGTCGCACGCAGCTCAACCCCTAACCTCACTCAGTTCGTT
CTTTCGGCGGAGTTTTCAATCTGTCGGCTGGCTGGCTTCTCCAGAGCAGT
AGTCTGCGCGGGACTGTCGCCTTGAACTAACAGTATGAAAACTGGGAAAG
GGGGGTCGGTGGTTGGGGTTAGGGTTAGGGTTATTTTCCTAGATGTACTT
CATTTCCGGCGTAGGCCGTCCCTCCAGGGCATGCCCCTACAAAGGCTTAG
TCACCTATGGGCCAAAACCATTAAAACCGCGCTTCAGCAATGCAACAGTG
GTATGTAGTCGGTAAAAAAAAAACAAGAAAATTCGGAGAAACTTCGTCGT
TCATGTGGTGCTCTCTAAATAATATAGAAGTATGCATTACGTTCCAATCA
AACCACCCTCGCGCCTACGAGTTTTCAATCGGTCGAGCAGCTGTGTTAAT
AATATGCACCCACCCAAAGTTGGCCATGTTCCGTAAGTGTTGGAGTCATC
GCACCCCCCCTGGACCGACTTTCAAAGGTCGATTACTCCACGACAAGAAA
AATGCTAGTGTGCCGAAAAGGGTGGCGTTGGAAATATCTCGTCGACACAA
AAGCTGTCCGAGAACGTGTCGTTTCGTGTCGACACCCCTCATCGTTACGG
ACTAATCGAGCTCTAAAAATCCACCGCACTTGCGCGGTGCGGTCACTCGA
ACACTTTACGGTAATATAGCTCTTGAAGCCGGTCTGCCGATCGATTGATC
CCGTCGAGCGCAACGCGGCTGCCGCAGGTGTTCGCCCAGTTTGGGGTGAC
CGTGTTCCGTGTTTTCCTGGTGCGGATCCCCCTGCGGCTAGCCCTGTCGG
TGATGGGGATCAAGCTGGAAGAGAAGCACGCCGATCTCAGGCGGCTCGGA
TTGCGGTGGGTACCCGTTTGAGTTTTTTTTTGGGGTTTTTACAACCCTGT
GGCAACGACGACCTCTCTGCTTTGGGGTCCCGATGGACGGGTCTCTCGTA
TGTGTAGTCTATACCTTGAAATCTCTTTTGATGTTGGTGGGTGCAGTCCA
GATAATACTATCGATTGGGTTTGTGTGTTTTATGTATTGTGTGTGTGTGT
GAGAGAGAGAGAGATAGAGAGAGAGATAAAGATCACTTTCGCTTTTGGAG
CGAACGGCGGCAAACTCGGAGGGGTCAGTCAAACCAGCGCTCCGTCCCCT
CCCCTACTTTTGGACCCCTAGTTGGGTTCGGCGAGGGGGTGAATACATAC
CGGTAATTGCTCTATATACTACGTATTTTTTAACAAGTATCAGCGGTCTA
CGTCCAACCTGTCAAAAATGAAAAGAGGCGTTCCAGGGGGACTACTGTTG
TACTAACGCTCCCTTACCACCCCCAACTACCGGCACAAAAGCCAACCTCG
CAAATCTTAAATCTTTGCAGGGGAGATGTTGAACTCTTCTGATATTTTAG
GTTGTTTTTCTGCTCGCTTACCGTTTGAACCCCATATCGAGTCCTTGCTC
TAGTGTGGGGTAGGTTCCATCTTTGATTCATTGTTTATTTTTAAAAGTCA
GCAAGCCCGCGCAATCACAGTTCGTAGCTTTTTTTGTCCACGGAATGCCT
GTTGTGGGAGTGTTTATGGTCTGCTTTATTTACGAGTATTTTAAGTCTAG
GGCAGGGTACAGCAGTAGTGTCAAGATGCCGTCATCCACTCTATTTACAT
AGGAGCATGTACATACAATACAATACATAAATCGCCTGGGGCGGACAAAT
TATTGTTTGTTGTTCGTTTTTTTCCTCCGTCGTGTTTAATTAACCCATTG
GATGTTGTAACCTGAACTCTTGCGTAGGTCGCCTGGGGCGGAGCCGCCGT
CCGGGCGGCCCGGCGGAGGAATTTTTAGGGGCGACATCATCGTCCGAAAC
AGCTGCTCCTTTCTCGAGGTGAGAGATATATAGAGCGAGTGAAGCGAGGG
AGGGAGGGGGTTGAGTGAGGAAATTGAGTGAGCGAAGTGGAGACAGACGG
GCAGCAAGGTGGCGCACTCGCGTAGATACGAGGGCAGAGTGCGGGTGGGA
GAGAAGGGGTGCACCTCGGTGGTGCCGCTTCGGGTACGGCGCGGTGGCTT
GCTTGCTCCTACTTGTCGGGGCTGCTGTAAGTATCAGGAGTGTGTGCGCC
GGCCGTGCTGAGATTTTGTGTTTTTTTTTGCAAGGCTCGTTTGTGAGTAG
ATACGTGCGGAGGATAGTACAGGTTCTCTCTCTCCGCTGCTAAATAGCTT
GTACCTTAAGGGGGAAGCGCTCGCTGTCGGCAGAAGTAAGCATGTATGTA
GCTTTTCGCTCTTGGAAAAGCACCCTCGTGTTTCGGCCCCGCGTAATCGG
GTTCGCGTCGTCTACCTCTTGGCTCTCGTTCGCCCCGGCGTTCAGCCTGT
TGTGTGTACTACTTGTGCGCGCACGCCGAACTCGCCCTCGTTCGCCCCAT
GTCCTTTGCCCCCCCCCCCCCATGCCCCTGGCGGCGCGTATCATTCAATG
CCCACCCAAGGTGCTGTACCTCCAGTCTAGAGTGACTCCGCAGTTCACGG
CCATCGCCGCTGGAGGGGAGTCTGCACCGGTATGTATTTGATACATTGGC
AGAGAGAGAGAGAGAGGGAGAGAAAGAGAGAGCGTGTGTTGTGTTGTGTT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCGTTGT
TACTGCTCTTGTTGTTGTTCAAGGGTGGCGGCTCCTAGGCTTTTTGTAGT
GGTGATGCTTAGTTTGCTGCCGCCGACAGCCGCCAATGATGGCTAGAATA
GACGGGAAATGTAGTTATGTTCATAGAATAGCTGCAAAGGGATCGATTCC
CCCCTTCTGATCAGGCCCCAACCCCGCTCGAAGGGAAAGGGTTAGCTGGG
CTGGGATCAACAAAGCCAATTACTCTGTAGAAAAGCTGTGCAGCCTTGCG
TGTACATGTGAGGAAATGCGACACAACAGGCAACAGGCAGGTGGTAAAAC
GTTCCGCAGAGTGTTGATTATTTTCTATTTCGGGAGCGCGGTGTTCTCTT
CCTTCTCCCAGATAAGCGACTTTAGACATCCTGTATTGTACATATGCATA
TGATATGTGGTGAATATAAATAGTATCTGCGTGTTTCTCGCAACTTACCT
GTTCTCCCCTCTCGCTGTTTTTGTTGTGGCTTTCCGTCGCGCGCGCGCTG
CTTGGCTGCTTGTGTGTGCGTGTGTCAATGCTGCTGCTGCTGCCGCTGGC
TTTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCAGGCGAAGTTAATGC
GAATCCGGTTTGTATCGGCCGTCTTGGGATCGTTCCGAGGACCCCCTGCT
GCGGGCGCTCTCAAGGAGGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGC
GCACGGGCTATACATCTGCTTGCTGTTTCACAATACCCTGTCGGGCATTT
GGCGATATGCCGCGGTGCTAAGTGCGGACTGCCCGGCCGGCGCACCATAT
ATCCGGATTGTGTTGGGTGCAGTTGAGGGGGAAATGTTCATTTCTACCGA
AAATCCGGGTCTGGTGCATTGGTGTAGGCGCCGTGCTTGCGCCGAACTCG
GAACTATCGTACAAAATGTACGTGAGTCAACCGATGCAGCTTGCAGCGTG
GCGTGCTACACATGTTGCTGTTGTTGTTGTTGCCTCTTCATTTAAAAACC
GTTCCGAATTCTCGACCCAGTACCTCCCTGTGTGCGTACTATTCCAACAC
TTGATGCGGTCAATTTCCGTTGTGACAAGGCTAACGTATACCTAAAAAAG
GTTTTATGAAAATATAATCGACCCGAAGGGTCAGCAAAGCGATAAAATTC
TTAACGTGTACTACTTACTATATGTATGCTAGACGTTGCGGGTGGCGATA
CTACGTACATGTACTGAGAGGATTGCTCCGCGACGAGATGGCTCCATCTT
AATGCACGTACTTCGAGTATTTATATATGTAGGACTGAGCTATGCAGTCT
GGTGCAGGGCCCTTAGGGTTTGGCGCGTGTTCGTCCTTCGTCGTCTGCGG
GTTGGGGCTGGTTAGTTCGCGCTTACCGTCGCCGTCGCGAGTCGGAAAGG
CGTGCCTCGCCCGTGTACCTCCTGCGCAGGCAGGGCCTATCGAGCCCGCG
GGCTCTCCTGTTTGCGCTTTGTTGCCCGCGTCGCACTAGTGCAAGTAAGC
TTGGAGTATGTGCCATCTGGTTGTGAATTGCTTCTGTCTCTTGACAGCGA
TACAGAGGCAGTGCGCTATCTATGTATGTGCGTATCTTGATGATCTTCAC
TGGGCGTGAGTGATTGTTTTTCTGCATAGAAGTATGGTGTTCTTGTGCGG
AAAAATCCGTGTAAATGCGCATGTTTTTTAAGTATTTACCATATGTGTTT
TTTTGCTCGTTTTTTCCTCTTTTCCTTTTTTTTTTTTCAGGAGCAGACTT
TGCGTGACATCATCACGTCTCCAAGAGGGAGGACCCGCTCCATCGTCGTC
GCGCCAGAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2104:12646..19355+

>mRNA_L-elsbetiae_contig2104.6380.1 ID=mRNA_L-elsbetiae_contig2104.6380.1|Name=mRNA_L-elsbetiae_contig2104.6380.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig2104:12646..19355+ (Laminarionema elsbetiae ELsaHSoW15)
AAATTCAGCAAGTGGGCCGATCGATCTTCGGGGGTGAACCCTTTCCTCCC
CTTCCCGCCGCGACTGCCCAAGTCTCTCTGCCTGCGCGTCCCGGTGTTCT
TGCTGCGGCTGTGCCTGGCTCTCGTGAGAGTGCCGGTGGCGCTGTCTCTC
CTGATGACCGCTTCTGTCGGAGGGGCCCTGTCGAGAAATTCAGCAAGTGG
GCCGATCGATCTTCGGGGGTGAACCCTTTCCTCCCCTTCCCGCCGCGACT
GCCCAAGTCTCTCTGCCTGCGCGTCCCGGTGTTCTTGCTGCGGCTGTGCC
TGGCTCTCGTGAGAGTGCCGGTGGCGCTGTCTCTCCTGATGACCGCTTCT
GTCGGAGGGGCCCTGTCGAGGTATTTGCCGGTGGTGATGGCTGTTTGGGC
GGCCGAGCGGGCGATGAACGGATTCTCTTCGGACCAGGTCTGGGGCACGA
GGTTCCTGCTCGCGATCCCGCTGCTGGTATTTGCCGGTGGTGATGGCTGT
TTGGGCGGCCGAGCGGGCGATGAACGGATTCTCTTCGGACCAGGTCTGGG
GCACGAGGTTCCTGCTCGCGATCCCGCTGCTGGTGTTCGCCCAGTTTGGG
GTGACCGTGTTCCGTGTTTTCCTGGTGCGGATCCCCCTGCGGCTAGCCCT
GTCGGTGATGGGGATCAAGCTGGAAGAGAAGCACGCCGATCTCAGGCGGC
TCGGATTGCGGTGTTCGCCCAGTTTGGGGTGACCGTGTTCCGTGTTTTCC
TGGTGCGGATCCCCCTGCGGCTAGCCCTGTCGGTGATGGGGATCAAGCTG
GAAGAGAAGCACGCCGATCTCAGGCGGCTCGGATTGCGGTCGCCTGGGGC
GGAGCCGCCGTCCGGGCGGCCCGGCGGAGGAATTTTTAGGGGCGACATCA
TCGTCCGAAACAGCTGCTCCTTTCTCGAGGTCGCCTGGGGCGGAGCCGCC
GTCCGGGCGGCCCGGCGGAGGAATTTTTAGGGGCGACATCATCGTCCGAA
ACAGCTGCTCCTTTCTCGAGGTGCTGTACCTCCAGTCTAGAGTGACTCCG
CAGTTCACGGCCATCGCCGCTGGAGGGGAGTCTGCACCGGTGCTGTACCT
CCAGTCTAGAGTGACTCCGCAGTTCACGGCCATCGCCGCTGGAGGGGAGT
CTGCACCGGCGAAGTTAATGCGAATCCGGTTTGTATCGGCCGTCTTGGGA
TCGTTCCGAGGACCCCCTGCTGCGGGCGCTCTCAAGGAGGCGAAGTTAAT
GCGAATCCGGTTTGTATCGGCCGTCTTGGGATCGTTCCGAGGACCCCCTG
CTGCGGGCGCTCTCAAGGAGACTTTGCGTGACATCATCACGTCTCCAAGA
GGGAGGACCCGCTCCATCGTCGTCGCGCCAGAGACTTTGCGTGACATCAT
CACGTCTCCAAGAGGGAGGACCCGCTCCATCGTCGTCGCGCCAGAG
back to top