mRNA_L-elsbetiae_contig21026.6374.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21026.6374.1
Unique NamemRNA_L-elsbetiae_contig21026.6374.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21026.6374.1 vs. uniprot
Match: A0A6H5JCR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR2_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 7.290e-29
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 SFQDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKRTMMDTDFEG 171
            + Q+AFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKR MMDTDFEG
Sbjct:  157 ALQEAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKRAMMDTDFEG 213
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BLAST of mRNA_L-elsbetiae_contig21026.6374.1 vs. uniprot
Match: D7FSA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA5_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 4.710e-28
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 SFQDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKRTMMDTDFEG 171
            + Q+AFSPFGKVYSIKIMWPRTDEERARKRNCGF+SFWR+EDAVNAKR MMDTDFEG
Sbjct:  253 ALQEAFSPFGKVYSIKIMWPRTDEERARKRNCGFLSFWRKEDAVNAKRAMMDTDFEG 309
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BLAST of mRNA_L-elsbetiae_contig21026.6374.1 vs. uniprot
Match: A0A836CAC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAC0_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.520e-18
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:   10 DAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKRTMMDTDFEG 171
            + FS FG++YSIKIMWPRTDEERAR+RNCGFVSFWRR DA  A+  M   D EG
Sbjct:  191 EIFSAFGEIYSIKIMWPRTDEERARRRNCGFVSFWRRGDAEAAREAMQGKDVEG 244
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BLAST of mRNA_L-elsbetiae_contig21026.6374.1 vs. uniprot
Match: A0A7S2DH44_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DH44_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 8.820e-18
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 SFQDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKRTMMDTDFEG 171
            +  + FS FG++YS+KIMWPRT+EERAR+RNCGFVSF +R DA +AK TM D + EG
Sbjct:  104 TLHELFSRFGQIYSVKIMWPRTEEERARRRNCGFVSFMQRPDADDAKTTMHDGEIEG 160
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BLAST of mRNA_L-elsbetiae_contig21026.6374.1 vs. uniprot
Match: A0A7S3UX26_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX26_HETAK)

HSP 1 Score: 81.6 bits (200), Expect = 1.070e-16
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:   10 DAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKRTMMDTDFEG 171
            D FS +G++YS+KIMWPRT+EER RKRNCGFVS+ RR DA +AK  M D D EG
Sbjct:   30 DIFSAYGEIYSVKIMWPRTEEERQRKRNCGFVSYMRRADAEDAKMAMHDQDLEG 83
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BLAST of mRNA_L-elsbetiae_contig21026.6374.1 vs. uniprot
Match: A0A7S2WJA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJA8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.430e-15
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 SFQDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKRTMMDTDFEG 171
            +  D F  +G++YS+KIMWPRT+EERARKRNCGFVSF +REDA  AK  + + + +G
Sbjct:  228 ALNDIFGKYGEIYSVKIMWPRTEEERARKRNCGFVSFMQREDAEAAKAALNEIELDG 284
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BLAST of mRNA_L-elsbetiae_contig21026.6374.1 vs. uniprot
Match: A0A7S2WJ81_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJ81_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.440e-15
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 SFQDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKRTMMDTDFEG 171
            +  D F  +G++YS+KIMWPRT+EERARKRNCGFVSF +REDA  AK  + + + +G
Sbjct:  228 ALNDIFGKYGEIYSVKIMWPRTEEERARKRNCGFVSFMQREDAEAAKAALNEIELDG 284
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BLAST of mRNA_L-elsbetiae_contig21026.6374.1 vs. uniprot
Match: H3GPP2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GPP2_PHYRM)

HSP 1 Score: 74.7 bits (182), Expect = 2.960e-14
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 SFQDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKRTMMDTDFEGE 174
            + Q  F  FG VYS+KIMWPR++EERAR+RNCGFVSF+ R DA +A+  M + + EG+
Sbjct:  220 ALQAEFGRFGDVYSVKIMWPRSEEERARRRNCGFVSFYERRDADDARINMSNKELEGQ 277
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BLAST of mRNA_L-elsbetiae_contig21026.6374.1 vs. uniprot
Match: A0A484EBR3_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EBR3_BRELC)

HSP 1 Score: 74.7 bits (182), Expect = 2.960e-14
Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   16 FSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKRTMMDTDFEGE 174
            F  +G+VYSIKIMWPR++EERARKRNCGFVSF++R DA +A+  + D   EG+
Sbjct:  227 FGRYGEVYSIKIMWPRSEEERARKRNCGFVSFYKRRDADDARINLDDKQLEGQ 279
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BLAST of mRNA_L-elsbetiae_contig21026.6374.1 vs. uniprot
Match: A0A5D6Y506_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y506_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.970e-14
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 SFQDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKRTMMDTDFEGE 174
            + +  F  FG V+S+KIMWPRT+EERAR+RNCGFVSF+ R DA  A+  + DT+  GE
Sbjct:  433 TLETLFGKFGDVFSVKIMWPRTEEERARRRNCGFVSFFDRRDADEARTALHDTETNGE 490
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21026.6374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCR2_9PHAE7.290e-2992.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSA5_ECTSI4.710e-2889.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CAC0_9STRA6.520e-1870.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2DH44_9STRA8.820e-1863.16Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3UX26_HETAK1.070e-1666.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2WJA8_9STRA2.430e-1557.89Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2WJ81_9STRA2.440e-1557.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
H3GPP2_PHYRM2.960e-1456.90Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A484EBR3_BRELC2.960e-1462.26Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A5D6Y506_9STRA2.970e-1456.90Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21026contigL-elsbetiae_contig21026:96..269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue4e-23
Seed eggNOG ortholog2880.D7FSA5
Preferred nameU2SURP
KEGG koko:K02878,ko:K12842
KEGG Pathwayko03010,ko03040,map03010,map03040
KEGG ModuleM00178
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005685,GO:0005686,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0017069,GO:0030532,GO:0030619,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035613,GO:0035614,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.U2 snRNP-associated SURP
EggNOG OGsKOG0151@1,KOG0151@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03041
Ec32 ortholog descriptionmRNA splicing factor, Cwf21
Ec32 orthologEc-05_004750.1
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815863.003548-CDS-L-elsbetiae_contig21026:95..2691622815863.003548-CDS-L-elsbetiae_contig21026:95..269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21026 96..269 +
1691683153.6465971-CDS-L-elsbetiae_contig21026:95..2691691683153.6465971-CDS-L-elsbetiae_contig21026:95..269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21026 96..269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21026.6374.1prot_L-elsbetiae_contig21026.6374.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21026 96..269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21026.6374.1

>prot_L-elsbetiae_contig21026.6374.1 ID=prot_L-elsbetiae_contig21026.6374.1|Name=mRNA_L-elsbetiae_contig21026.6374.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=58bp
SFQDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKRTM
MDTDFEGE
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mRNA from alignment at L-elsbetiae_contig21026:96..269+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21026.6374.1 ID=mRNA_L-elsbetiae_contig21026.6374.1|Name=mRNA_L-elsbetiae_contig21026.6374.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=174bp|location=Sequence derived from alignment at L-elsbetiae_contig21026:96..269+ (Laminarionema elsbetiae ELsaHSoW15)
TCGTTCCAGGATGCCTTCTCCCCCTTCGGCAAGGTGTACTCGATCAAGAT
CATGTGGCCCCGGACTGACGAGGAGCGGGCCCGCAAGAGGAACTGCGGGT
TCGTGAGCTTCTGGAGGAGGGAGGACGCCGTCAACGCGAAGAGGACCATG
ATGGACACCGACTTCGAAGGTGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21026:96..269+

>mRNA_L-elsbetiae_contig21026.6374.1 ID=mRNA_L-elsbetiae_contig21026.6374.1|Name=mRNA_L-elsbetiae_contig21026.6374.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=348bp|location=Sequence derived from alignment at L-elsbetiae_contig21026:96..269+ (Laminarionema elsbetiae ELsaHSoW15)
TCGTTCCAGGATGCCTTCTCCCCCTTCGGCAAGGTGTACTCGATCAAGAT
CATGTGGCCCCGGACTGACGAGGAGCGGGCCCGCAAGAGGAACTGCGGGT
TCGTGAGCTTCTGGAGGAGGGAGGACGCCGTCAACGCGAAGAGGACCATG
ATGGACACCGACTTCGAAGGTGAGTCGTTCCAGGATGCCTTCTCCCCCTT
CGGCAAGGTGTACTCGATCAAGATCATGTGGCCCCGGACTGACGAGGAGC
GGGCCCGCAAGAGGAACTGCGGGTTCGTGAGCTTCTGGAGGAGGGAGGAC
GCCGTCAACGCGAAGAGGACCATGATGGACACCGACTTCGAAGGTGAG
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