mRNA_L-elsbetiae_contig21003.6367.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21003.6367.1
Unique NamemRNA_L-elsbetiae_contig21003.6367.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig21003.6367.1 vs. uniprot
Match: D8LM52_ECTSI (Uric acid-xanthine permease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM52_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 6.200e-38
Identity = 74/80 (92.50%), Postives = 75/80 (93.75%), Query Frame = 1
Query:   43 MVGGVITVPLLVAGGFDANLGEEQTQYLISAALIVSGITSIIQVMQFKIPKTSIVIGTGLVSVMGTSFTFLPVARDAISQ 282
            MVGGVITVPLLVAG FDANL  EQ QYLISAALIVSGITSIIQVMQ KIPKT+IVIGTGLVSVMGTSFTFLPVARDAISQ
Sbjct:    1 MVGGVITVPLLVAGTFDANLPAEQIQYLISAALIVSGITSIIQVMQVKIPKTNIVIGTGLVSVMGTSFTFLPVARDAISQ 80          
BLAST of mRNA_L-elsbetiae_contig21003.6367.1 vs. uniprot
Match: A0A1Y1IDD5_KLENI (Xanthine/uracil transporter n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IDD5_KLENI)

HSP 1 Score: 112 bits (279), Expect = 8.980e-27
Identity = 54/87 (62.07%), Postives = 73/87 (83.91%), Query Frame = 1
Query:   16 VISLQHALAMVGGVITVPLLVAGGFDANLGEEQTQYLISAALIVSGITSIIQVMQFKIPKTSIVIGTGLVSVMGTSFTFLPVARDAI 276
            V+ LQHALAMVGG+ITVPL+++G F  N  ++++QY+I+AALIVSGI S++QV +FKIP T   +GTGL+SVMG SFTFLP+A+ +I
Sbjct:   48 VMGLQHALAMVGGIITVPLIISGSFYGNFTQDESQYIIAAALIVSGIASMVQVTRFKIPFTPYYLGTGLLSVMGISFTFLPIAQSSI 134          
BLAST of mRNA_L-elsbetiae_contig21003.6367.1 vs. uniprot
Match: L1JEK5_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JEK5_GUITC)

HSP 1 Score: 106 bits (264), Expect = 7.480e-25
Identity = 51/85 (60.00%), Postives = 69/85 (81.18%), Query Frame = 1
Query:   16 VISLQHALAMVGGVITVPLLVAGGFDANLGEEQTQYLISAALIVSGITSIIQVMQFKIPKTSIVIGTGLVSVMGTSFTFLPVARD 270
            V+ LQHA+AMVGG++T  LL++G  +  L +E+T+YL+SA LIVSGI S+IQV Q K+ +T +V+GTGL+SV GTSFTFLP+AR 
Sbjct:   15 VMGLQHAIAMVGGIVTPALLLSGSNELRLSKEETRYLVSAGLIVSGIASLIQVHQLKVGRTGLVVGTGLISVAGTSFTFLPIARS 99          
BLAST of mRNA_L-elsbetiae_contig21003.6367.1 vs. uniprot
Match: A0A6U5ZEU0_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A6U5ZEU0_GUITH)

HSP 1 Score: 106 bits (264), Expect = 1.090e-24
Identity = 51/85 (60.00%), Postives = 69/85 (81.18%), Query Frame = 1
Query:   16 VISLQHALAMVGGVITVPLLVAGGFDANLGEEQTQYLISAALIVSGITSIIQVMQFKIPKTSIVIGTGLVSVMGTSFTFLPVARD 270
            V+ LQHA+AMVGG++T  LL++G  +  L +E+T+YL+SA LIVSGI S+IQV Q K+ +T +V+GTGL+SV GTSFTFLP+AR 
Sbjct:  110 VMGLQHAIAMVGGIVTPALLLSGSNELRLSKEETRYLVSAGLIVSGIASLIQVHQLKVGRTGLVVGTGLISVAGTSFTFLPIARS 194          
BLAST of mRNA_L-elsbetiae_contig21003.6367.1 vs. uniprot
Match: A0A7S0Y369_HEMAN (Hypothetical protein (Fragment) n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y369_HEMAN)

HSP 1 Score: 105 bits (263), Expect = 1.500e-24
Identity = 52/88 (59.09%), Postives = 71/88 (80.68%), Query Frame = 1
Query:   16 VISLQHALAMVGGVITVPLLVAGGFDANLGEEQTQYLISAALIVSGITSIIQVMQFKIPKTSIVIGTGLVSVMGTSFTFLPVARDAIS 279
            V+ LQH LAMVGG+ITVPLL+AG FDA     + +YLI+A LIVSG+ S++Q+ QF++P    ++GTGL+SV+G+SFTFLP+AR AI+
Sbjct:   77 VMGLQHCLAMVGGIITVPLLIAGPFDARFSAGEQEYLIAAGLIVSGLLSLVQITQFRLPG-GYMLGTGLISVVGSSFTFLPIARTAIA 163          
BLAST of mRNA_L-elsbetiae_contig21003.6367.1 vs. uniprot
Match: L1J5M8_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J5M8_GUITC)

HSP 1 Score: 104 bits (259), Expect = 5.160e-24
Identity = 47/88 (53.41%), Postives = 69/88 (78.41%), Query Frame = 1
Query:   16 VISLQHALAMVGGVITVPLLVAGGFDANLGEEQTQYLISAALIVSGITSIIQVMQFKIPKTSIVIGTGLVSVMGTSFTFLPVARDAIS 279
            ++  QHALAM+GG+++VPLL+AG FD  +  E+ +YLIS  LI SGI S+IQ+ QFK+  T   +GTG++SV+GTSFTF+P+AR +++
Sbjct:   56 IMGFQHALAMIGGIVSVPLLLAGPFDGKMKIEEKEYLISCGLIASGILSLIQITQFKLGNTGYYLGTGMISVLGTSFTFVPIARSSMA 143          
BLAST of mRNA_L-elsbetiae_contig21003.6367.1 vs. uniprot
Match: A0A175WH41_9PEZI (Uric acid-xanthine permease n=1 Tax=Madurella mycetomatis TaxID=100816 RepID=A0A175WH41_9PEZI)

HSP 1 Score: 102 bits (254), Expect = 2.320e-23
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 1
Query:   16 VISLQHALAMVGGVITVPLLVAGGFDANLGEEQTQYLISAALIVSGITSIIQVMQFKIPKTSIVIGTGLVSVMGTSFTFLPVARDAISQ 282
            ++  QHALAM+ GVIT P+++AG    NLG EQTQYL+S ALIVSG+ S IQ+ +F+I +T   IGTGL+SV+G SF+ +PVA  A SQ
Sbjct:   77 ILGFQHALAMLAGVITPPMIMAGAGGVNLGPEQTQYLVSTALIVSGLLSAIQITRFRIMRTPYYIGTGLISVVGISFSIIPVATGAFSQ 165          
BLAST of mRNA_L-elsbetiae_contig21003.6367.1 vs. uniprot
Match: G2QJX9_MYCTT (Uncharacterized protein n=1 Tax=Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799) TaxID=573729 RepID=G2QJX9_MYCTT)

HSP 1 Score: 100 bits (250), Expect = 8.030e-23
Identity = 50/89 (56.18%), Postives = 66/89 (74.16%), Query Frame = 1
Query:   16 VISLQHALAMVGGVITVPLLVAGGFDANLGEEQTQYLISAALIVSGITSIIQVMQFKIPKTSIVIGTGLVSVMGTSFTFLPVARDAISQ 282
            ++  QHALAM+ G+IT P+++AG   ANL  EQTQYL+S +LIVSG+ S IQ+ +F+I KT   IGTGL+SV+G SF  +PVA  A SQ
Sbjct:   77 ILGFQHALAMLAGIITPPIIMAGSGGANLSSEQTQYLVSTSLIVSGLLSAIQITRFRILKTPYYIGTGLISVVGISFAIIPVASGAFSQ 165          
BLAST of mRNA_L-elsbetiae_contig21003.6367.1 vs. uniprot
Match: A0A2T4B910_9HYPO (Xanthine/uracil permease n=1 Tax=Trichoderma citrinoviride TaxID=58853 RepID=A0A2T4B910_9HYPO)

HSP 1 Score: 100 bits (250), Expect = 8.140e-23
Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 1
Query:   19 ISLQHALAMVGGVITVPLLVAGGFDANLGEEQTQYLISAALIVSGITSIIQVMQFKIPKTSIVIGTGLVSVMGTSFTFLPVARDAISQ 282
            + LQHALAM+ G+IT PL++AG   ANL  EQ QYL+S ALIVSGI S IQ+ +F I KT   +GTGL+SV+G SF+ +PVA+ A+SQ
Sbjct:   80 LGLQHALAMLAGIITPPLILAGAGGANLPAEQQQYLVSTALIVSGILSSIQITRFHIYKTPYYVGTGLISVVGISFSIIPVAQGALSQ 167          
BLAST of mRNA_L-elsbetiae_contig21003.6367.1 vs. uniprot
Match: A0A086SUD2_ACRC1 (Uric acid-xanthine permease-like protein n=1 Tax=Acremonium chrysogenum (strain ATCC 11550 / CBS 779.69 / DSM 880 / IAM 14645 / JCM 23072 / IMI 49137) TaxID=857340 RepID=A0A086SUD2_ACRC1)

HSP 1 Score: 100 bits (250), Expect = 8.200e-23
Identity = 49/88 (55.68%), Postives = 67/88 (76.14%), Query Frame = 1
Query:   19 ISLQHALAMVGGVITVPLLVAGGFDANLGEEQTQYLISAALIVSGITSIIQVMQFKIPKTSIVIGTGLVSVMGTSFTFLPVARDAISQ 282
            +  QHALAM+ GVIT P+L++G   ANL  EQ QYL+S ALIVSGI S +Q+ +F+I KT   +GTGL+SV+G SFT +P+A+ A++Q
Sbjct:   76 LGFQHALAMLAGVITPPILLSGAGGANLSPEQQQYLVSTALIVSGILSAVQISRFRIYKTPYYVGTGLISVVGVSFTLIPIAQGALAQ 163          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21003.6367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM52_ECTSI6.200e-3892.50Uric acid-xanthine permease n=1 Tax=Ectocarpus sil... [more]
A0A1Y1IDD5_KLENI8.980e-2762.07Xanthine/uracil transporter n=1 Tax=Klebsormidium ... [more]
L1JEK5_GUITC7.480e-2560.00Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A6U5ZEU0_GUITH1.090e-2460.00Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S0Y369_HEMAN1.500e-2459.09Hypothetical protein (Fragment) n=3 Tax=Hemiselmis... [more]
L1J5M8_GUITC5.160e-2453.41Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A175WH41_9PEZI2.320e-2357.30Uric acid-xanthine permease n=1 Tax=Madurella myce... [more]
G2QJX9_MYCTT8.030e-2356.18Uncharacterized protein n=1 Tax=Myceliophthora the... [more]
A0A2T4B910_9HYPO8.140e-2359.09Xanthine/uracil permease n=1 Tax=Trichoderma citri... [more]
A0A086SUD2_ACRC18.200e-2355.68Uric acid-xanthine permease-like protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21003contigL-elsbetiae_contig21003:210..848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue9.4e-30
Seed eggNOG ortholog2880.D8LM52
KEGG koko:K03458
KEGG TC2.A.40
Hectar predicted targeting categorysignal peptide
GOsGO:0000322,GO:0000323,GO:0000324,GO:0002054,GO:0002060,GO:0003674,GO:0005215,GO:0005345,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005775,GO:0005776,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006863,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0010008,GO:0012505,GO:0015075,GO:0015143,GO:0015205,GO:0015711,GO:0015747,GO:0015851,GO:0016020,GO:0016021,GO:0022857,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031974,GO:0031982,GO:0034220,GO:0034423,GO:0036094,GO:0042906,GO:0042907,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0070013,GO:0071702,GO:0071705,GO:0071944,GO:0072530,GO:0097159,GO:0097708,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:1901363,GO:1901702,GO:1904823
EggNOG free text desc.xanthine transmembrane transporter activity
EggNOG OGs2QQD4@2759,COG2233@1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size286
Cds size285
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815862.326205-CDS-L-elsbetiae_contig21003:209..3101622815862.326205-CDS-L-elsbetiae_contig21003:209..310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21003 210..310 +
1691683153.2274346-CDS-L-elsbetiae_contig21003:209..3101691683153.2274346-CDS-L-elsbetiae_contig21003:209..310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21003 210..310 +
1622815862.3391988-CDS-L-elsbetiae_contig21003:664..8481622815862.3391988-CDS-L-elsbetiae_contig21003:664..848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21003 665..848 +
1691683153.2396002-CDS-L-elsbetiae_contig21003:664..8481691683153.2396002-CDS-L-elsbetiae_contig21003:664..848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21003 665..848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21003.6367.1prot_L-elsbetiae_contig21003.6367.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21003 210..848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21003.6367.1

>prot_L-elsbetiae_contig21003.6367.1 ID=prot_L-elsbetiae_contig21003.6367.1|Name=mRNA_L-elsbetiae_contig21003.6367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
METNPVISLQHALAMVGGVITVPLLVAGGFDANLGEEQTQYLISAALIVS
GITSIIQVMQFKIPKTSIVIGTGLVSVMGTSFTFLPVARDAISQA
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mRNA from alignment at L-elsbetiae_contig21003:210..848+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21003.6367.1 ID=mRNA_L-elsbetiae_contig21003.6367.1|Name=mRNA_L-elsbetiae_contig21003.6367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=639bp|location=Sequence derived from alignment at L-elsbetiae_contig21003:210..848+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAACAAACCCTGTAATCTCGCTGCAGCACGCCCTGGCCATGGTGGG AGGCGTGATCACCGTCCCCCTTCTTGTTGCCGGCGGCTTCGACGCAAACC TGTGAGCAAAACTACTAATGGTGCTGTCAACTATTGTATCTGTTGTTGTT GCGCACACCGGAAACTGTTTTGGGCTGGACGTCAACGGCCCTGGCTTAGA ACACGGTTTAGCTCTAGGCATGCTTTTCCGATTGTGTCTGCTGATGATGC AATTGATAGTAGTCGTCGTTAAATGTCTCTCACCTCTGCTACTCAGGACA AAAAAATGGGGGCCCGCGCCCACCTCACAGAAGCGTGAAACGAAGAGGAT AAACCACCAAACTAAATATTTTATTAGTATTGCACCCGCGCTCCCCCCCC CCCCCGCGCGCGCGCGCCCGCTCCGTTCTTCTCACTTGTTGGAACACACA AACAGCGGCGAGGAGCAGACGCAGTACCTGATCAGCGCCGCGCTGATTGT GTCGGGCATCACGTCCATCATCCAAGTGATGCAGTTCAAGATCCCCAAGA CCAGCATCGTCATCGGAACGGGGCTGGTCTCCGTCATGGGGACATCTTTT ACGTTCCTCCCGGTGGCTCGGGACGCCATCAGCCAGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21003:210..848+

>mRNA_L-elsbetiae_contig21003.6367.1 ID=mRNA_L-elsbetiae_contig21003.6367.1|Name=mRNA_L-elsbetiae_contig21003.6367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig21003:210..848+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAACAAACCCTGTAATCTCGCTGCAGCACGCCCTGGCCATGGTGGG
AGGCGTGATCACCGTCCCCCTTCTTGTTGCCGGCGGCTTCGACGCAAACC
TATGGAAACAAACCCTGTAATCTCGCTGCAGCACGCCCTGGCCATGGTGG
GAGGCGTGATCACCGTCCCCCTTCTTGTTGCCGGCGGCTTCGACGCAAAC
CTCGGCGAGGAGCAGACGCAGTACCTGATCAGCGCCGCGCTGATTGTGTC
GGGCATCACGTCCATCATCCAAGTGATGCAGTTCAAGATCCCCAAGACCA
GCATCGTCATCGGAACGGGGCTGGTCTCCGTCATGGGGACATCTTTTACG
TTCCTCCCGGTGGCTCGGGACGCCATCAGCCAGGCCCGGCGAGGAGCAGA
CGCAGTACCTGATCAGCGCCGCGCTGATTGTGTCGGGCATCACGTCCATC
ATCCAAGTGATGCAGTTCAAGATCCCCAAGACCAGCATCGTCATCGGAAC
GGGGCTGGTCTCCGTCATGGGGACATCTTTTACGTTCCTCCCGGTGGCTC
GGGACGCCATCAGCCAGGCC
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