mRNA_L-elsbetiae_contig210.6361.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig210.6361.1
Unique NamemRNA_L-elsbetiae_contig210.6361.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig210.6361.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 4.940e-28
Identity = 58/98 (59.18%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:    1 DSWLTFPDAARFGPLDDDTNYTDDREDFIKVFGNAQDGEFEYSGRADVDNS-RTEIGVEFAEAGQYVMEIAGRSHGHEIDQIILFGETLSVDDAAAGC 291
            DSWL FPDA RFGP     +Y      F+KV+GNA DG F+Y G A+ +N   T+I +EFA AG+Y MEI GRSHGH+IDQI+LFG++L VDDA AGC
Sbjct:  812 DSWLNFPDADRFGPAGTSKSYGT----FVKVYGNAADGVFKYQGTAEEENGDHTQIAIEFAAAGEYEMEIGGRSHGHQIDQIVLFGDSLKVDDAVAGC 905
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BLAST of mRNA_L-elsbetiae_contig210.6361.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 4.570e-26
Identity = 57/99 (57.58%), Postives = 70/99 (70.71%), Query Frame = 1 
Query:    1 DSWLTFPDAARFGPLDDDTNYTDDREDFIKVFGNAQDGEFEYSGRA-DVDNSRTEIGVEFAEAGQYVMEIAGRSHGHEIDQIILFGETL-SVDDAAAGC 291
            DSWL FPDA RFGP D   +Y      F+KV+GNA DG F+Y G A D D + T+I +EFA AG+Y MEI GRSHGH+IDQI+LFG +  + +DA AGC
Sbjct:  393 DSWLNFPDADRFGPADTSKSYGT----FVKVYGNAADGVFKYQGTAEDEDGAHTQIAIEFAAAGEYEMEIGGRSHGHQIDQIVLFGGSFHTAEDAVAGC 487
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BLAST of mRNA_L-elsbetiae_contig210.6361.1 vs. uniprot
Match: D7FU28_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU28_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.110e-24
Identity = 55/99 (55.56%), Postives = 70/99 (70.71%), Query Frame = 1 
Query:    1 DSWLTFPDAARFGPLDDDTNYTDDREDFIKVFGNAQDGEFEYSGRADVDNSRTEIGVEFAEAGQYVMEIAGRSHGHEIDQIILFGETLSVDDAAA--GC 291
            D+WL FPDA R+GP     +Y      FIKV+G A +G+FEYSG  +  +  T+I VEF EAG+Y MEI+GRSHG +IDQI++FGE LSVD+A A  GC
Sbjct:  675 DAWLNFPDAKRYGPAGTQESYGT----FIKVYGRATNGDFEYSGTGEDSHGHTQIAVEFEEAGEYAMEISGRSHGLQIDQILVFGEDLSVDEAVANTGC 769
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BLAST of mRNA_L-elsbetiae_contig210.6361.1 vs. uniprot
Match: UPI0009F81ED3 (T9SS type A sorting domain-containing protein n=1 Tax=Saccharicrinis aurantiacus TaxID=1849719 RepID=UPI0009F81ED3)

HSP 1 Score: 53.9 bits (128), Expect = 2.190e-5
Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 1 
Query:    1 DSWLTFPDAARFGPLDDDTNYTDDREDFIKVFGNAQDGEFEYSGRADVDNSRTEIGVEFAEAGQYVMEIAGRSHGHEIDQIIL 249
            D+W+ F D   +   D  T       DFIK +G +  G F   G  + ++S   + V+   AG Y MEIAGRSHG++ID+I++
Sbjct:  424 DAWIKFSDGIGYFGEDQVT-------DFIKFYGRSDPG-FWLHGVGEYNHSHKWVNVKIPAAGTYTMEIAGRSHGYQIDKIVM 498
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BLAST of mRNA_L-elsbetiae_contig210.6361.1 vs. uniprot
Match: A0A7Y1V8U9_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=A0A7Y1V8U9_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 3.110e-5
Identity = 38/105 (36.19%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:    1 DSWLTFPDAARFGPLD-DDTNYT-----------DDREDFIKVFGNAQDGEFEYSGRADVDNSRTEIGVEFAEAGQYVMEIAGRSHGHEIDQIILFGETLSVDDA 279
            DSWL FPDAA++  +  D T Y               + + KV+ NA  G++ ++     D+    I VEF  AG Y +EI+GRS+GH ID++ L+ E  S ++A
Sbjct:  124 DSWLRFPDAAKYYAVRADQTIYPKGTGMTPNPNGSSSKGWFKVYQNAL-GKWTWNSSTS-DHEPHSIFVEFDTAGIYKLEISGRSNGHAIDRLALYHEMASSEEA 226
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BLAST of mRNA_L-elsbetiae_contig210.6361.1 vs. uniprot
Match: A0A3D9L0M2_MARFU (Putative secreted protein (Por secretion system target) n=1 Tax=Marinoscillum furvescens DSM 4134 TaxID=1122208 RepID=A0A3D9L0M2_MARFU)

HSP 1 Score: 53.1 bits (126), Expect = 4.060e-5
Identity = 31/83 (37.35%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:    1 DSWLTFPDAARFGPLDDDTNYTDDREDFIKVFGNAQDGEFEYSGRADVDNSRTEIGVEFAEAGQYVMEIAGRSHGHEIDQIIL 249
            D+W+ F D   +      T  TD    FIK +G +  G F   G  + D+    + V+  E G Y MEIAGRSHG++ID+I++
Sbjct:  423 DAWIRFSDGIGYWGS---TQITD----FIKFYGRSDPG-FWLHGIGEKDHKHNWVNVKITEPGTYTMEIAGRSHGYQIDKIVM 497
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig210.6361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LED7_ECTSI4.940e-2859.18EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JMV6_9PHAE4.570e-2657.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU28_ECTSI1.110e-2455.56EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
UPI0009F81ED32.190e-537.35T9SS type A sorting domain-containing protein n=1 ... [more]
A0A7Y1V8U9_9BACT3.110e-536.19T9SS type A sorting domain-containing protein n=1 ... [more]
A0A3D9L0M2_MARFU4.060e-537.35Putative secreted protein (Por secretion system ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig210contigL-elsbetiae_contig210:30052..30537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue5.4e-25
Seed eggNOG ortholog2880.D8LED7
KEGG koko:K01315
KEGG Pathwayko04080,ko04610,ko05150,ko05164,map04080,map04610,map05150,map05164
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.4.21.7
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147,ko04516
Exons1
Model size486
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815861.9127097-CDS-L-elsbetiae_contig210:30051..305371622815861.9127097-CDS-L-elsbetiae_contig210:30051..30537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 30052..30537 +
1691683152.9809933-CDS-L-elsbetiae_contig210:30051..305371691683152.9809933-CDS-L-elsbetiae_contig210:30051..30537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 30052..30537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig210.6361.1prot_L-elsbetiae_contig210.6361.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig210 30052..30537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig210.6361.1

>prot_L-elsbetiae_contig210.6361.1 ID=prot_L-elsbetiae_contig210.6361.1|Name=mRNA_L-elsbetiae_contig210.6361.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
DSWLTFPDAARFGPLDDDTNYTDDREDFIKVFGNAQDGEFEYSGRADVDN
SRTEIGVEFAEAGQYVMEIAGRSHGHEIDQIILFGETLSVDDAAAGCESA
PPTPVSPTPEPVMPVTPPTAEPTPEPTPEPTAEPTPEPTPSPVAPVSPPT
PEPVMPVAPPS*
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mRNA from alignment at L-elsbetiae_contig210:30052..30537+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig210.6361.1 ID=mRNA_L-elsbetiae_contig210.6361.1|Name=mRNA_L-elsbetiae_contig210.6361.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig210:30052..30537+ (Laminarionema elsbetiae ELsaHSoW15)
GACAGCTGGCTGACCTTCCCCGACGCCGCACGCTTCGGTCCCTTAGACGA
CGACACCAACTACACAGATGACCGGGAGGACTTCATCAAGGTATTCGGCA
ACGCCCAGGACGGCGAGTTCGAGTACTCCGGCAGGGCCGACGTCGATAAT
AGCCGCACCGAGATCGGCGTTGAGTTTGCCGAAGCCGGTCAGTACGTGAT
GGAGATCGCCGGCCGCTCCCACGGGCACGAGATCGACCAGATCATCTTGT
TCGGAGAGACTCTCAGTGTGGACGACGCTGCTGCCGGCTGCGAGTCTGCT
CCTCCCACCCCCGTTTCTCCCACCCCTGAGCCTGTTATGCCGGTCACGCC
GCCTACAGCCGAGCCTACGCCCGAGCCTACGCCCGAGCCTACCGCCGAGC
CAACACCCGAACCTACGCCTTCCCCTGTGGCACCGGTCTCTCCCCCTACC
CCCGAGCCCGTGATGCCAGTCGCCCCCCCCTCGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig210:30052..30537+

>mRNA_L-elsbetiae_contig210.6361.1 ID=mRNA_L-elsbetiae_contig210.6361.1|Name=mRNA_L-elsbetiae_contig210.6361.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig210:30052..30537+ (Laminarionema elsbetiae ELsaHSoW15)
GACAGCTGGCTGACCTTCCCCGACGCCGCACGCTTCGGTCCCTTAGACGA
CGACACCAACTACACAGATGACCGGGAGGACTTCATCAAGGTATTCGGCA
ACGCCCAGGACGGCGAGTTCGAGTACTCCGGCAGGGCCGACGTCGATAAT
AGCCGCACCGAGATCGGCGTTGAGTTTGCCGAAGCCGGTCAGTACGTGAT
GGAGATCGCCGGCCGCTCCCACGGGCACGAGATCGACCAGATCATCTTGT
TCGGAGAGACTCTCAGTGTGGACGACGCTGCTGCCGGCTGCGAGTCTGCT
CCTCCCACCCCCGTTTCTCCCACCCCTGAGCCTGTTATGCCGGTCACGCC
GCCTACAGCCGAGCCTACGCCCGAGCCTACGCCCGAGCCTACCGCCGAGC
CAACACCCGAACCTACGCCTTCCCCTGTGGCACCGGTCTCTCCCCCTACC
CCCGAGCCCGTGATGCCAGTCGCCCCCCCCTCGTGAGACAGCTGGCTGAC
CTTCCCCGACGCCGCACGCTTCGGTCCCTTAGACGACGACACCAACTACA
CAGATGACCGGGAGGACTTCATCAAGGTATTCGGCAACGCCCAGGACGGC
GAGTTCGAGTACTCCGGCAGGGCCGACGTCGATAATAGCCGCACCGAGAT
CGGCGTTGAGTTTGCCGAAGCCGGTCAGTACGTGATGGAGATCGCCGGCC
GCTCCCACGGGCACGAGATCGACCAGATCATCTTGTTCGGAGAGACTCTC
AGTGTGGACGACGCTGCTGCCGGCTGCGAGTCTGCTCCTCCCACCCCCGT
TTCTCCCACCCCTGAGCCTGTTATGCCGGTCACGCCGCCTACAGCCGAGC
CTACGCCCGAGCCTACGCCCGAGCCTACCGCCGAGCCAACACCCGAACCT
ACGCCTTCCCCTGTGGCACCGGTCTCTCCCCCTACCCCCGAGCCCGTGAT
GCCAGTCGCCCCCCCCTCGTGA
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