mRNA_L-elsbetiae_contig210.6360.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig210.6360.1
Unique NamemRNA_L-elsbetiae_contig210.6360.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig210.6360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig210contigL-elsbetiae_contig210:29316..29877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size274
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815861.5881639-CDS-L-elsbetiae_contig210:29315..295091622815861.5881639-CDS-L-elsbetiae_contig210:29315..29509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 29316..29509 +
1691683152.7837076-CDS-L-elsbetiae_contig210:29315..295091691683152.7837076-CDS-L-elsbetiae_contig210:29315..29509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 29316..29509 +
1622815861.5999124-CDS-L-elsbetiae_contig210:29798..298771622815861.5999124-CDS-L-elsbetiae_contig210:29798..29877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 29799..29877 +
1691683152.7946227-CDS-L-elsbetiae_contig210:29798..298771691683152.7946227-CDS-L-elsbetiae_contig210:29798..29877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 29799..29877 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig210.6360.1prot_L-elsbetiae_contig210.6360.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig210 29316..29877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig210.6360.1

>prot_L-elsbetiae_contig210.6360.1 ID=prot_L-elsbetiae_contig210.6360.1|Name=mRNA_L-elsbetiae_contig210.6360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
MPIASPTPGPTTSVAAPTPAPAMPVMPVAPPISDPDMPDTPTTPEPVMPV
VPPMIGPDMPVAPPTDEDCMVVIVEAEDLDVTGDWRIVDSS
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mRNA from alignment at L-elsbetiae_contig210:29316..29877+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig210.6360.1 ID=mRNA_L-elsbetiae_contig210.6360.1|Name=mRNA_L-elsbetiae_contig210.6360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=562bp|location=Sequence derived from alignment at L-elsbetiae_contig210:29316..29877+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGATCGCTTCTCCCACGCCTGGACCAACCACATCTGTGGCTGCCCC
GACCCCCGCGCCTGCCATGCCGGTCATGCCGGTCGCGCCGCCGATCTCCG
ACCCCGATATGCCCGACACTCCCACCACGCCCGAGCCCGTGATGCCGGTT
GTGCCGCCTATGATAGGCCCTGACATGCCGGTCGCCCCCCCCACGTGAGT
AAGATGAAGCCCTCGTTGGAGAGCTATAGCGCCTTGTCGAAAAGGGTGTG
GTAGGGCAAGGTTTGAAGGCGGCGTGCGAAGTCCCGATCCGGCTAGAATT
GGCGGTGCGTTCCTACCGACAGGTTTGCGTGGTCAGCTTAGTAGCCTAAT
GGCTGCTGTCGTGTAGAACATCATAGGAGGACTATTTAGATAGTGCTCCC
ACGCTTCCATAATTACTCCCACCCTCACAACTCCGTTCAGTTTTTCGCTG
CACCTTCGGCTTGTTTCCTTGGGCGCTGAGCAGTGACGAAGATTGCATGG
TCGTGATCGTCGAGGCCGAAGACCTCGATGTGACGGGCGACTGGAGAATC
GTAGATAGCTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig210:29316..29877+

>mRNA_L-elsbetiae_contig210.6360.1 ID=mRNA_L-elsbetiae_contig210.6360.1|Name=mRNA_L-elsbetiae_contig210.6360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig210:29316..29877+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGATCGCTTCTCCCACGCCTGGACCAACCACATCTGTGGCTGCCCC
GACCCCCGCGCCTGCCATGCCGGTCATGCCGGTCGCGCCGCCGATCTCCG
ACCCCGATATGCCCGACACTCCCACCACGCCCGAGCCCGTGATGCCGGTT
GTGCCGCCTATGATAGGCCCTGACATGCCGGTCGCCCCCCCCACATGCCG
ATCGCTTCTCCCACGCCTGGACCAACCACATCTGTGGCTGCCCCGACCCC
CGCGCCTGCCATGCCGGTCATGCCGGTCGCGCCGCCGATCTCCGACCCCG
ATATGCCCGACACTCCCACCACGCCCGAGCCCGTGATGCCGGTTGTGCCG
CCTATGATAGGCCCTGACATGCCGGTCGCCCCCCCCACTGACGAAGATTG
CATGGTCGTGATCGTCGAGGCCGAAGACCTCGATGTGACGGGCGACTGGA
GAATCGTAGATAGCTCGTGACGAAGATTGCATGGTCGTGATCGTCGAGGC
CGAAGACCTCGATGTGACGGGCGACTGGAGAATCGTAGATAGCTCG
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