mRNA_L-elsbetiae_contig210.6359.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig210.6359.1
Unique NamemRNA_L-elsbetiae_contig210.6359.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig210.6359.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.630e-22
Identity = 46/70 (65.71%), Postives = 53/70 (75.71%), Query Frame = 3 
Query:   12 QYSTECWCGTSDNEADYERHGPGNCIMGCGGDELVPCGGYGSYSLYKYDNDGEIPTAAPTTEMPTATDTP 221
            Q+S+ECWCGTSD++ADYERHG G C M C GD  V CGGY +YSL+KYDN GE PT AP T+ P   DTP
Sbjct: 1290 QFSSECWCGTSDDDADYERHGEGVCHMACSGDGTVACGGYDAYSLFKYDNGGEAPTTAPVTDSP---DTP 1356
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BLAST of mRNA_L-elsbetiae_contig210.6359.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.920e-21
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 3 
Query:   12 QYSTECWCGTSDNEADYERHGPGNCIMGCGGDELVPCGGYGSYSLYKYDNDGEIPTAAPTTEMP 203
            Q+S+ECWCGTSD+EADYERHG G C M C GD  V CGGY +YSL+K+DN G+ PT AP T+ P
Sbjct:  944 QFSSECWCGTSDDEADYERHGEGVCHMACSGDGTVACGGYDAYSLFKHDNGGKTPTMAPVTDSP 1007
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BLAST of mRNA_L-elsbetiae_contig210.6359.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 7.770e-13
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 3 
Query:   12 QYSTECWCGTSDNEADYERHGPGNCIMGCGGDELVPCGGYGSYSLYKYDNDGE 170
            QY  ECWCG S++E DY+RHG G+C+ GC GD  V CGG+ +++L+K+D   E
Sbjct:  577 QYGDECWCGMSNDEEDYKRHGRGSCLAGCSGDPTVACGGFDAFNLFKFDGIAE 629
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BLAST of mRNA_L-elsbetiae_contig210.6359.1 vs. uniprot
Match: A0A6H5JLD0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD0_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.630e-12
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 3 
Query:   12 QYSTECWCGTSDNEADYERHGPGNCIMGCGGDELVPCGGYGSYSLYK 152
            QY  ECWCG S++E DY+RHG G+C+M C GD    CGG+ +++LYK
Sbjct:  148 QYGDECWCGMSNDEEDYKRHGSGSCLMECSGDSATVCGGFNAFNLYK 194
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BLAST of mRNA_L-elsbetiae_contig210.6359.1 vs. uniprot
Match: D8LED5_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED5_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 3.440e-10
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 3 
Query:   12 QYSTECWCGTSDNEADYERHGPGNCIMGCGGDELVPCGGYGSYSLYK 152
            QY  ECWCG S++E DY+RHG G+C+M C GD    CGG  +++LYK
Sbjct:  402 QYGDECWCGMSNDEEDYKRHGSGSCLMECSGDPGTVCGGNDAFNLYK 448
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BLAST of mRNA_L-elsbetiae_contig210.6359.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.250e-9
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 3 
Query:   12 QYSTECWCGTSDNEADYERHGPGNCIMGCGGDELVPCGGYGSYSLYKYDN 161
            QY  ECWCG S++E DY+RHG G+C+ GC GD  V CG      +YK+++
Sbjct:  155 QYGDECWCGMSEDEQDYKRHGRGSCLAGCSGDPTVACGRDFQVVIYKHES 204
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig210.6359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FRE8_ECTSI1.630e-2265.71EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JJ37_9PHAE1.920e-2165.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LED7_ECTSI7.770e-1352.83EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JLD0_9PHAE2.630e-1255.32WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LED5_ECTSI3.440e-1055.32EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JMV6_9PHAE2.250e-950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig210contigL-elsbetiae_contig210:26841..29316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size408
Cds size408
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815861.5447648-CDS-L-elsbetiae_contig210:26840..269631622815861.5447648-CDS-L-elsbetiae_contig210:26840..26963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 26841..26963 +
1691683152.7658162-CDS-L-elsbetiae_contig210:26840..269631691683152.7658162-CDS-L-elsbetiae_contig210:26840..26963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 26841..26963 +
1622815861.554826-CDS-L-elsbetiae_contig210:29031..293161622815861.554826-CDS-L-elsbetiae_contig210:29031..29316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 29032..29316 +
1691683152.7749488-CDS-L-elsbetiae_contig210:29031..293161691683152.7749488-CDS-L-elsbetiae_contig210:29031..29316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 29032..29316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig210.6359.1prot_L-elsbetiae_contig210.6359.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig210 26841..29316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig210.6359.1

>prot_L-elsbetiae_contig210.6359.1 ID=prot_L-elsbetiae_contig210.6359.1|Name=mRNA_L-elsbetiae_contig210.6359.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
MISVSTRRNAGAALATTRPITRGTARATVSWDAGATNSFLAVDMAHIHCT
STTTTAKYLPRPPRPRCRPPPIHLTQSRSRPPPTCLRPLIRRPLRRCLPP
PTCQPQPPLPRLSRPPRLSRRPQQRCPSIRLLRSPP
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mRNA from alignment at L-elsbetiae_contig210:26841..29316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig210.6359.1 ID=mRNA_L-elsbetiae_contig210.6359.1|Name=mRNA_L-elsbetiae_contig210.6359.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2476bp|location=Sequence derived from alignment at L-elsbetiae_contig210:26841..29316+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATATCTGTCAGTACTCGACGGAATGCTGGTGCGGCACTAGCGACAAC
GAGGCCGATTACGAGAGGCACGGCCCGGGCAACTGTATCATGGGATGCGG
GGGCGACGAACTCGTTCCTTGCGGTGCGTCGAAAACTCGGGTGTGGCCGC
AGTGGCTGCGATTGCGCCTGTTGGTCATTACTATTATTGTTGAAATAGTG
GTGGCTGTACACCGTGGTGGTCCGTCCGGGACAATTTGTCCATTCACGTT
TTTTGTCATAACTTTCGGAAAAAAACGAATCAGACCGATAATCAAGTATG
GTAGTGATCCCCGCAGCAAGGCGAGAAAAACATATTTTGAAAACATTTTG
GACACCTCACCACTATTTTCAAGCCATTGTGTGGCCAAAAAAGTTGAAGA
CTGGGAAAAAATCTGGGTTTTGGACAAAATGTCGATATCTGGAGAACCAG
AGTTTTTTTGAACAATCGGAAAAATTTAGTTCTGGGGAATATGAGAGGAT
TCGTTTGCCGTGCTATTTTTTTTAAACGTATGGTTGATTTTATGTCAGGA
AAAAACGAACAAACTTTTCTACTTTTTTTGTGATTCCGACGAGACAAAAT
AAATAATAAAAATTGCTTTCCATGGAAAGACACGCCTGGAGACAGGGCGT
TTGCCGGTGTCTTTGGAATTTCAAACAACCACCTGTGTCCAGAGAAAAGT
GTACCTAAGTGCAGGTTGCAATTATGGAAAATGTATCCTGGACGAACCAT
ATAAACATATATATACATGCATACTTGGGCTCTCGAGCCCTGAGAGGCCT
CCTTGCTTGCTCAGCGCTCCAGAGCCCTTTTTTTGCGATTTCTCCGCCCC
TAGAAATCGTCTCGCCGCGAAACTTGCGCGTGTCGGTAGCGCTGAGTTGC
GAGGGCCTTGCCCTTGTGCGGCTCGCGATCGGTACGGCCGAGGCGCAGCG
GTAGCGAGGTCGCAAACTCGCGTCTACGAGATCTACGCTCGCTCCGCCAA
TTACACGCGCCAATCTTAGCAAATGACCAGTCCATTCATTGGCGATCCCA
GTACAGTCCCTTACGGCGCTTATTTTTCCGACGCGCGACGGAAATTGCCG
TGGACACCAAAACTCTCAATTCCTGTACCAACCGCAGCTATTGGTACACC
ACGCAAAGTTATCTTCTTACTTAGTGCTGCTGTCTTTGCTTCCCAACATG
CTATTGCCTTTCTGTTGCTTCTAACAAACCAAGCGTTGTCGGAGTGCACG
CACGACAAACGCGCCCAAATCCCCGCCGGGCTGAAATTGCGGCAAGTTGT
TCGCTGTTGGTCATCGGACAAAAGTTTTCACTCGAGAATGCCACTGGGCG
CCATCATATACGTGATTGCTCAGCAGCCAGCAGAATAGACCTGAGCACCA
CCCAGTTCTCGGCGCCTAGGGCACCGATCGCAATCGGAGTATTTCAAGCG
TGTGCTCTATGGTGATATATTTGGGCGTGCCAGTCGTGTGGGGCATAGGT
GTTGCGTGTGGCGAGAGCTTTGTGTCGGAGTAGAATCCGATCTGAACCTT
TCGACTGATTCCTTTCGCCTGAGAATCAGTCGGCAAGTTGTTCGCTGTGG
GTCATCGGACAAAAGTTCTCACCCAAGAATGCCACTGGCCGCCAGTTACG
AAATCGTGATCAGGATTTTTCTGGTGTTTTCTACTCGCTCGCATGTCAAA
TCGACCGGTTTCATATTTTCACGCTTTCGATCGAACCTCTTTTCGCTCGC
TTTCGGCGTCAAAATAAGTAAAGTTATTTCATTCAACCTGTACGAAACAA
ACACATGCCACCAAGTCAACAATAACGGGCATATCGACCCACTTGGCATC
GTTTTCAGCCTTCAGCGGAGCGGTGGGACGCCTCAGCGGCCCACCGCGAA
GCCCCTTGTTTGAAGTATGTTTTTTCATGTTGGTGTCGTCTTGAGAAGCG
TGTGTTGTCGTTGATTTTGCTGGAAACAAATGAAGAACTGTTCGCGCCAT
GATACGTTGCACCGCTCAGCCCGCCCTTGCCCCCCTTCCTCTCTAGAAAA
TCTTCAGGCAGGCGTGCTGCACCAATCAGGCATGGCGTGCAACGCACCTC
TATCATCGCCCGATGCATCAGCCTCGCGCCGCGCCAAAATGATTTCGAGT
CGTTCCTTCTATCCGCCCCGTACCTTTGACGCAAACTCCAGGTGGATATG
GCTCATATTCACTGTACAAGTACGACAACGACGGCGAAATACCTACCGCG
GCCCCCACGACCGAGATGCCGACCGCCACCGATACACCTAACGCAATCGA
GGAGCCGACCTCCACCGACATGCCTGCGTCCACTGATACGCCGACCGCTA
CGGAGATGCCTACCTCCACCGACATGCCAGCCCCAACCACCCCTTCCACG
GCTCAGCCGTCCTCCACGACTGAGCCGCCGACCTCAACAGAGATGCCCGT
CGATTCGTCTACTCCGGAGCCCGCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig210:26841..29316+

>mRNA_L-elsbetiae_contig210.6359.1 ID=mRNA_L-elsbetiae_contig210.6359.1|Name=mRNA_L-elsbetiae_contig210.6359.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig210:26841..29316+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATATCTGTCAGTACTCGACGGAATGCTGGTGCGGCACTAGCGACAAC
GAGGCCGATTACGAGAGGCACGGCCCGGGCAACTGTATCATGGGATGCGG
GGGCGACGAACTCGTTCCTTGCGATGATATCTGTCAGTACTCGACGGAAT
GCTGGTGCGGCACTAGCGACAACGAGGCCGATTACGAGAGGCACGGCCCG
GGCAACTGTATCATGGGATGCGGGGGCGACGAACTCGTTCCTTGCGGTGG
ATATGGCTCATATTCACTGTACAAGTACGACAACGACGGCGAAATACCTA
CCGCGGCCCCCACGACCGAGATGCCGACCGCCACCGATACACCTAACGCA
ATCGAGGAGCCGACCTCCACCGACATGCCTGCGTCCACTGATACGCCGAC
CGCTACGGAGATGCCTACCTCCACCGACATGCCAGCCCCAACCACCCCTT
CCACGGCTCAGCCGTCCTCCACGACTGAGCCGCCGACCTCAACAGAGATG
CCCGTCGATTCGTCTACTCCGGAGCCCGCCAGTGGATATGGCTCATATTC
ACTGTACAAGTACGACAACGACGGCGAAATACCTACCGCGGCCCCCACGA
CCGAGATGCCGACCGCCACCGATACACCTAACGCAATCGAGGAGCCGACC
TCCACCGACATGCCTGCGTCCACTGATACGCCGACCGCTACGGAGATGCC
TACCTCCACCGACATGCCAGCCCCAACCACCCCTTCCACGGCTCAGCCGT
CCTCCACGACTGAGCCGCCGACCTCAACAGAGATGCCCGTCGATTCGTCT
ACTCCGGAGCCCGCCA
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