mRNA_L-elsbetiae_contig2097.6344.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2097.6344.1
Unique NamemRNA_L-elsbetiae_contig2097.6344.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2097.6344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2097contigL-elsbetiae_contig2097:19448..20038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue4.8e-07
Seed eggNOG ortholog2880.D8LMX2
Hectar predicted targeting categoryother localisation
EggNOG OGs28KYD@1,2QTF4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size271
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815859.849933-CDS-L-elsbetiae_contig2097:19447..196401622815859.849933-CDS-L-elsbetiae_contig2097:19447..19640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2097 19448..19640 -
1691683151.4538105-CDS-L-elsbetiae_contig2097:19447..196401691683151.4538105-CDS-L-elsbetiae_contig2097:19447..19640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2097 19448..19640 -
1622815859.8609462-CDS-L-elsbetiae_contig2097:19961..200381622815859.8609462-CDS-L-elsbetiae_contig2097:19961..20038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2097 19962..20038 -
1691683151.465718-CDS-L-elsbetiae_contig2097:19961..200381691683151.465718-CDS-L-elsbetiae_contig2097:19961..20038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2097 19962..20038 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2097.6344.1prot_L-elsbetiae_contig2097.6344.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2097 19448..20038 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2097.6344.1

>prot_L-elsbetiae_contig2097.6344.1 ID=prot_L-elsbetiae_contig2097.6344.1|Name=mRNA_L-elsbetiae_contig2097.6344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
DEARGHAFKQSHNKSNKERRKEKRIRERERLREETERLVSAATEVERRRG
LQLCAESRAAVVAEAEATFAETRERDQAAADRRQAEALAG
back to top

mRNA from alignment at L-elsbetiae_contig2097:19448..20038-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2097.6344.1 ID=mRNA_L-elsbetiae_contig2097.6344.1|Name=mRNA_L-elsbetiae_contig2097.6344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=591bp|location=Sequence derived from alignment at L-elsbetiae_contig2097:19448..20038- (Laminarionema elsbetiae ELsaHSoW15)
GACGAAGCACGTGGTCACGCTTTTAAGCAAAGCCATAACAAAAGCAACAA
GGAGCGCCGCAAGGAAAAACGCATCAGGTGTGCCAACCAATAAGAAACTG
CCAACCAGTATCTAGAAGCAGCTGGTTAAAACCACTACACCCAGGTTGTG
GAAAAATTGGTCTCCTTTCATTATGAACTACGGTGCCTCCTCCCTCGATC
TCCAACCGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
ACCAGGGACGCTCAACCTAATAAACGGCCACAAACAGCGGCACAAAATCA
ACGAACACACCTTTCTCGCCCCCCCCCAAAAAACAAATAACTGCCCAGGG
AGCGAGAACGCCTCCGCGAAGAAACCGAGAGGCTCGTCTCCGCCGCCACA
GAAGTGGAGCGGCGGCGCGGCCTCCAGCTGTGCGCCGAGTCGAGGGCCGC
GGTCGTCGCCGAGGCCGAAGCCACCTTCGCCGAGACGCGGGAGCGGGACC
AAGCGGCCGCCGACAGGAGGCAGGCGGAGGCGCTGGCCGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2097:19448..20038-

>mRNA_L-elsbetiae_contig2097.6344.1 ID=mRNA_L-elsbetiae_contig2097.6344.1|Name=mRNA_L-elsbetiae_contig2097.6344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig2097:19448..20038- (Laminarionema elsbetiae ELsaHSoW15)
GACGAAGCACGTGGTCACGCTTTTAAGCAAAGCCATAACAAAAGCAACAA
GGAGCGCCGCAAGGAAAAACGCATCAGGACGAAGCACGTGGTCACGCTTT
TAAGCAAAGCCATAACAAAAGCAACAAGGAGCGCCGCAAGGAAAAACGCA
TCAGGGAGCGAGAACGCCTCCGCGAAGAAACCGAGAGGCTCGTCTCCGCC
GCCACAGAAGTGGAGCGGCGGCGCGGCCTCCAGCTGTGCGCCGAGTCGAG
GGCCGCGGTCGTCGCCGAGGCCGAAGCCACCTTCGCCGAGACGCGGGAGC
GGGACCAAGCGGCCGCCGACAGGAGGCAGGCGGAGGCGCTGGCCGGGGGA
GCGAGAACGCCTCCGCGAAGAAACCGAGAGGCTCGTCTCCGCCGCCACAG
AAGTGGAGCGGCGGCGCGGCCTCCAGCTGTGCGCCGAGTCGAGGGCCGCG
GTCGTCGCCGAGGCCGAAGCCACCTTCGCCGAGACGCGGGAGCGGGACCA
AGCGGCCGCCGACAGGAGGCAGGCGGAGGCGCTGGCCGGG
back to top