mRNA_L-elsbetiae_contig20963.6340.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20963.6340.1
Unique NamemRNA_L-elsbetiae_contig20963.6340.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20963.6340.1 vs. uniprot
Match: A0A6H5JPH1_9PHAE (LNS2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.600e-27
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 YGKTLRPTSEQLAALRLRAGCNTVEFVVNVAGQPERVVSARAFLWGSGAKVVISDIENTIARRSV 195
            YGKTLRPTSEQLAALRLR GCNT+EFVVNVAGQ ERVVSARAFLWGSGA+VV+SDIENTIAR  V
Sbjct: 1373 YGKTLRPTSEQLAALRLRPGCNTIEFVVNVAGQAERVVSARAFLWGSGARVVVSDIENTIARSGV 1437
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BLAST of mRNA_L-elsbetiae_contig20963.6340.1 vs. uniprot
Match: D7G275_ECTSI (Phosphatidate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G275_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 4.000e-27
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    1 YGKTLRPTSEQLAALRLRAGCNTVEFVVNVAGQPERVVSARAFLWGSGAKVVISDIENTIAR 186
            YGKTLRPTSEQLAALRLR GCNT+EFVVNVAGQ ERVVSARAFLWGSGA+VV+SDIENTIAR
Sbjct: 1113 YGKTLRPTSEQLAALRLRPGCNTIEFVVNVAGQAERVVSARAFLWGSGARVVVSDIENTIAR 1174
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BLAST of mRNA_L-elsbetiae_contig20963.6340.1 vs. uniprot
Match: A0A7S2G7L7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7L7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.220e-11
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 YGKTLRPTSEQLAALRLRAGCNTVEFVVNVAGQPERVVSARAFLWGSGAKVVISDIENTIAR 186
            Y ++L PTSE+LA +RLR G NTVEFVV    + ER VSAR FLW   AK+VI+DI+  I R
Sbjct:  334 YRRSLLPTSEELATMRLRPGTNTVEFVVRTIREGERRVSARVFLWRPDAKLVITDIDGAITR 395
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BLAST of mRNA_L-elsbetiae_contig20963.6340.1 vs. uniprot
Match: A0A7S2SPP2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPP2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.640e-10
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    1 YGKTLRPTSEQLAALRLRAGCNTVEFVVNVAGQPERVVSARAFLWGSGAKVVISDIENTIARRSVSSLCCARELLDEVHTHILRI 255
            Y K+L PTSEQL AL L+ G NTVEF +NV G  ER VSA  FLW +  ++V++D++  I R S       R   D  H+ + ++
Sbjct:   38 YRKSLVPTSEQLQALGLKPGMNTVEFKINVRG--ERHVSAHIFLWSTRTRIVVTDVDGAITRSSGRGNLMPRLSRDWSHSGVAKL 120
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BLAST of mRNA_L-elsbetiae_contig20963.6340.1 vs. uniprot
Match: A0A7S2WSW5_9STRA (Phosphatidate phosphatase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSW5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.840e-10
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    1 YGKTLRPTSEQLAALRLRAGCNTVEFVVNVAGQPERVVSARAFLWGSGAKVVISDIENTIARRSVSSLCCARELLDEVHTHILRI 255
            Y K+L PTSEQL AL L+ G NTVEF +NV G  ER VSA  FLW +  ++V++D++  I R S       R   D  H+ + ++
Sbjct:  548 YRKSLVPTSEQLQALGLKPGMNTVEFKINVRG--ERHVSAHIFLWSTRTRIVVTDVDGAITRSSGRGNLMPRLSRDWSHSGVAKL 630
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BLAST of mRNA_L-elsbetiae_contig20963.6340.1 vs. uniprot
Match: A0A1X1BN53_9APIC (Phosphatidate phosphatase n=1 Tax=Babesia sp. Xinjiang TaxID=462227 RepID=A0A1X1BN53_9APIC)

HSP 1 Score: 63.5 bits (153), Expect = 1.390e-8
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 YGKTLRPTSEQLAALRLRAGCNTVEFVVNVAGQPERVVSARAFLWGSGAKVVISDIENTIAR 186
            Y  ++RPTS+QLAAL L+ G N + F VN + Q  + V AR +LW S +++VISD++ TI +
Sbjct:  375 YKVSIRPTSDQLAALNLKMGVNRITFTVNSSWQGTKSVHARLYLWPSDSRIVISDVDGTITK 436
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BLAST of mRNA_L-elsbetiae_contig20963.6340.1 vs. uniprot
Match: A0A8J5XSQ8_DIALT (Phosphatidate phosphatase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XSQ8_DIALT)

HSP 1 Score: 61.2 bits (147), Expect = 9.380e-8
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:    7 KTLRPTSEQLAALRLRAGCNTVEFVVNVAGQPERVVSARAFLWGSGAKVVISDIENTIARRSVSSLCCARELLDEVHTHI 246
            K +R  SEQLAAL+L+ G NT+ F V+ + Q  +VVSA  FLW    K+VISD++ TI +  V      R  +D  H+ +
Sbjct:  701 KRIRLRSEQLAALKLKQGHNTISFSVHSSLQGTQVVSAAIFLWKRHCKIVISDVDGTITKSDVLGHVMPRVGIDWSHSGV 780
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BLAST of mRNA_L-elsbetiae_contig20963.6340.1 vs. uniprot
Match: A0A6I9TG20_SESIN (phosphatidate phosphatase PAH2 isoform X1 n=2 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TG20_SESIN)

HSP 1 Score: 58.9 bits (141), Expect = 5.880e-7
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    7 KTLRPTSEQLAALRLRAGCNTVEFVVNVAGQPERVVSARAFLWGSGAKVVISDIENTIAR 186
            +TL PTSEQLA+L+L+ G N V F  + A   ++ V AR FLW   A++VISD++ TI R
Sbjct:  755 RTLTPTSEQLASLKLKEGKNIVIFTFSTAMLGKQQVDARIFLWRWDARIVISDVDGTITR 814
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BLAST of mRNA_L-elsbetiae_contig20963.6340.1 vs. uniprot
Match: U6KY29_EIMTE (Phosphatidate phosphatase n=1 Tax=Eimeria tenella TaxID=5802 RepID=U6KY29_EIMTE)

HSP 1 Score: 58.5 bits (140), Expect = 7.330e-7
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:    7 KTLRPTSEQLAALRLRAGCNTVEFVVNVAGQPERVVSARAFLWGSGAKVVISDIENTIARRSV 195
            ++LRPT EQL AL L+ G N+V F V+ A Q E+ V    +LW +  K+V+SD++ TI R  V
Sbjct:  293 RSLRPTPEQLEALDLKPGANSVCFTVSSALQGEKSVCGTIYLWPTDIKIVVSDVDGTITRSDV 355
[Close]
BLAST of mRNA_L-elsbetiae_contig20963.6340.1 vs. uniprot
Match: A0A0G4PEZ8_PENCA (Lipin, N-terminal conserved region n=31 Tax=leotiomyceta TaxID=716546 RepID=A0A0G4PEZ8_PENCA)

HSP 1 Score: 58.5 bits (140), Expect = 7.680e-7
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    1 YGKTLRPTSEQLAALRLRAGCNTVEFVVNVAGQPERVVSARAFLWGSGAKVVISDIENTIAR 186
            Y KTLR TS+QL AL+L+AG NT+ F VN A     + +A  +LW     +VISDI+ TI +
Sbjct:  397 YAKTLRLTSDQLKALQLKAGANTMSFSVNRA-----ICTANMYLWNGNTPIVISDIDGTITK 453
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20963.6340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPH1_9PHAE1.600e-2789.23LNS2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G275_ECTSI4.000e-2791.94Phosphatidate phosphatase n=1 Tax=Ectocarpus silic... [more]
A0A7S2G7L7_9STRA2.220e-1158.06Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SPP2_9STRA3.640e-1043.53Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2WSW5_9STRA6.840e-1043.53Phosphatidate phosphatase n=1 Tax=Rhizochromulina ... [more]
A0A1X1BN53_9APIC1.390e-846.77Phosphatidate phosphatase n=1 Tax=Babesia sp. Xinj... [more]
A0A8J5XSQ8_DIALT9.380e-842.50Phosphatidate phosphatase n=2 Tax=Diacronema luthe... [more]
A0A6I9TG20_SESIN5.880e-750.00phosphatidate phosphatase PAH2 isoform X1 n=2 Tax=... [more]
U6KY29_EIMTE7.330e-746.03Phosphatidate phosphatase n=1 Tax=Eimeria tenella ... [more]
A0A0G4PEZ8_PENCA7.680e-748.39Lipin, N-terminal conserved region n=31 Tax=leotio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20963contigL-elsbetiae_contig20963:900..2294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue2.4e-24
Seed eggNOG ortholog2880.D7G275
KEGG rclassRC00017
KEGG koko:K15728
KEGG ReactionR02239
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylinositol transporter activity
EggNOG OGsCOG5083@1,KOG2116@2759
EC3.1.3.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Exons2
Model size530
Cds size441
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20963.6340.1prot_L-elsbetiae_contig20963.6340.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20963 900..2205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815859.6430497-CDS-L-elsbetiae_contig20963:899..9351622815859.6430497-CDS-L-elsbetiae_contig20963:899..935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20963 900..935 +
1691683151.3570316-CDS-L-elsbetiae_contig20963:899..9351691683151.3570316-CDS-L-elsbetiae_contig20963:899..935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20963 900..935 +
1622815859.660264-CDS-L-elsbetiae_contig20963:1800..22051622815859.660264-CDS-L-elsbetiae_contig20963:1800..2205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20963 1801..2205 +
1691683151.3716667-CDS-L-elsbetiae_contig20963:1800..22051691683151.3716667-CDS-L-elsbetiae_contig20963:1800..2205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20963 1801..2205 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815859.6734529-UTR-L-elsbetiae_contig20963:2205..22941622815859.6734529-UTR-L-elsbetiae_contig20963:2205..2294Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20963 2206..2294 +
1691683151.379519-UTR-L-elsbetiae_contig20963:2205..22941691683151.379519-UTR-L-elsbetiae_contig20963:2205..2294Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20963 2206..2294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20963.6340.1

>prot_L-elsbetiae_contig20963.6340.1 ID=prot_L-elsbetiae_contig20963.6340.1|Name=mRNA_L-elsbetiae_contig20963.6340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
YGKTLRPTSEQLAALRLRAGCNTVEFVVNVAGQPERVVSARAFLWGSGAK
VVISDIENTIARRSVSSLCCARELLDEVHTHILRICLVPHFFGREKRRKS
EPPPKGFWLDADDAWSPLARFDARGVAVAASAAAAPAETGTGTAST*
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mRNA from alignment at L-elsbetiae_contig20963:900..2294+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20963.6340.1 ID=mRNA_L-elsbetiae_contig20963.6340.1|Name=mRNA_L-elsbetiae_contig20963.6340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1395bp|location=Sequence derived from alignment at L-elsbetiae_contig20963:900..2294+ (Laminarionema elsbetiae ELsaHSoW15)
TACGGGAAGACGCTGCGCCCGACGTCGGAGCAGCTGGTGGGTGGAGTGGG
TTTGGCCTTCAGAGCTTGCGTAGAAGATGGCGTGTGTTCTGCGATTGGTT
TTGCTCCCCTCCCTCTTATGCGGGCGTGTCTTGTTGAAATCCCTGTTCCC
CCTTTTTCGGATGCCCAAGGTCTGTCCTCTTCCAGTGAAAATGTGAAATC
GTTTTCAAGGAGGCGCAGAAATGAGCTATTTCTTGGTAAGCGCTCGCCGC
TGAGTCCAGCTTTTGTAGTGGAGCACGAAGAACGAACCGAATCGATGCCC
TAGTCGCGGAGTACGGACGACTCAGGGTGACCCAAAACTACGCCGGTCCG
GGCTTCGCGGACAATACGCGCATTCAAGACCCCCCCACCGAAAAAAAAGC
CCCCGCCCTCTTGAGGCACGCTCACACCAGTGCGCCGGCTCTAGGAGCTC
ACATGCTTCATCCCAGACGAAACTAACCACAGGGGATGCGATCTACTGCT
TATAGCTAGCGCGGATGCGGGCGTTAGACGCTGAATCGCTCCGCGAGCAT
CAGATCAGAGCTGCCTTCACACACACTTCCAGCGGCAGCAAGCAGCAGCT
GCAGTTAGTGATCTGAACATCTGAACGCACCCAGAAAAGTTTCTCCTTAA
AAAATCACCGGCGCATGTGCCTCCTTAAAAACGATGGTGTATACTCCTAT
ATAGCAAAGACAGGCTGTGGTTGTTTCCCCCATCCCCCTTTACAGGCACG
GCCCACGGTGGGTGGAGAAGCATCCAAACGCGCATCACGACGAAAATCCT
CAAGTCGTGAAATAATTGGCCCTGTCTTTGTTGAACCCACCCCCCCTCCC
CGCTCACCATGCTTCCCGTTTCCGCGCCCCTGACACTACATATTATTATA
GGCCGCTTTGAGACTGAGGGCTGGGTGCAACACGGTGGAGTTTGTCGTTA
ACGTCGCCGGGCAACCGGAGCGCGTCGTGTCGGCTCGCGCCTTCCTGTGG
GGCAGCGGGGCTAAGGTTGTGATCTCGGACATCGAGAACACCATCGCCAG
GAGGTCCGTCTCTTCTCTCTGTTGCGCGAGGGAACTACTGGACGAAGTAC
ATACACACATACTTCGTATCTGTTTAGTGCCCCATTTTTTTGGCAGAGAG
AAGCGGAGAAAAAGTGAACCACCGCCAAAGGGATTTTGGTTAGATGCCGA
CGATGCGTGGTCTCCGCTGGCTAGGTTTGATGCTCGAGGCGTGGCGGTAG
CAGCATCAGCTGCAGCAGCACCAGCAGAAACAGGCACAGGCACAGCAAGC
ACCTGAGCGCTGGTGTTGGCGGAGTGTCTGTTGCGCTCCTTCGTGCTTCG
CTAACCGTGCTGTGTGCGTGCATACAGTCGCGTTCTTGTCGCTCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20963:900..2294+

>mRNA_L-elsbetiae_contig20963.6340.1 ID=mRNA_L-elsbetiae_contig20963.6340.1|Name=mRNA_L-elsbetiae_contig20963.6340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig20963:900..2294+ (Laminarionema elsbetiae ELsaHSoW15)
TACGGGAAGACGCTGCGCCCGACGTCGGAGCAGCTGTACGGGAAGACGCT
GCGCCCGACGTCGGAGCAGCTGGCCGCTTTGAGACTGAGGGCTGGGTGCA
ACACGGTGGAGTTTGTCGTTAACGTCGCCGGGCAACCGGAGCGCGTCGTG
TCGGCTCGCGCCTTCCTGTGGGGCAGCGGGGCTAAGGTTGTGATCTCGGA
CATCGAGAACACCATCGCCAGGAGGTCCGTCTCTTCTCTCTGTTGCGCGA
GGGAACTACTGGACGAAGTACATACACACATACTTCGTATCTGTTTAGTG
CCCCATTTTTTTGGCAGAGAGAAGCGGAGAAAAAGTGAACCACCGCCAAA
GGGATTTTGGTTAGATGCCGACGATGCGTGGTCTCCGCTGGCTAGGTTTG
ATGCTCGAGGCGTGGCGGTAGCAGCATCAGCTGCAGCAGCACCAGCAGAA
ACAGGCACAGGCACAGCAAGCACCTGAGCCGCTTTGAGACTGAGGGCTGG
GTGCAACACGGTGGAGTTTGTCGTTAACGTCGCCGGGCAACCGGAGCGCG
TCGTGTCGGCTCGCGCCTTCCTGTGGGGCAGCGGGGCTAAGGTTGTGATC
TCGGACATCGAGAACACCATCGCCAGGAGGTCCGTCTCTTCTCTCTGTTG
CGCGAGGGAACTACTGGACGAAGTACATACACACATACTTCGTATCTGTT
TAGTGCCCCATTTTTTTGGCAGAGAGAAGCGGAGAAAAAGTGAACCACCG
CCAAAGGGATTTTGGTTAGATGCCGACGATGCGTGGTCTCCGCTGGCTAG
GTTTGATGCTCGAGGCGTGGCGGTAGCAGCATCAGCTGCAGCAGCACCAG
CAGAAACAGGCACAGGCACAGCAAGCACCTGA
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