mRNA_L-elsbetiae_contig2093.6331.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2093.6331.1 vs. uniprot
Match: D7FJ44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ44_ECTSI) HSP 1 Score: 253 bits (646), Expect = 8.610e-75 Identity = 189/386 (48.96%), Postives = 214/386 (55.44%), Query Frame = 3 Query: 6 AAEAQPRRSKLTPDDRSRVDDMHEILGEVWEPFKTAAGAIRGLE--------ADASPWLELEFWDSLAEAFLRYFGKAITLQVDTAGLLRAQRAAAKSQATAQXXXXXXXXXXXXXSSVENTPAASASGVSGTTADASGKDGXXXXXSSSISDAA--PTSPSQRRSPAGSGGRFGDATAGDDDGDNKADGDAAGLPAVSPEDVSVSVVDSIAAAAAAGLDGEEGGLLEGGDGAQAEAEGEGG------------------VGAVDASDPSAARLEMLPMGAVAHLSRRDRLGIIRKTVPTERRMLVLQRLFHLAQAPAVEVELLVASVKELKDNSSSAEIRDVNLLQTWQGVREERDAAWERATEQVRLAADSA------ESAPAA 1061 AA+ QPRRS LTPD R RV +MHEILGEVWEPFKTA GAIRGLE A A+PWLELEFWDSLAEAF+RYFG+AITLQVDTAGLLR+Q+A AK+ A AQ S+E++ S +G T +A+ DG +SI+ A PT+ + S SGG GD G GA+ +A EGG + S+ S RLEM HL R DRLGIIRKTVP ERRM VLQRLFHLAQAPA EVE LV VKELK+NSS AEIRDVNLL+TWQGVREER AWE ATEQVRLAA +A ES PAA Sbjct: 18 AADLQPRRSTLTPDQRLRVQNMHEILGEVWEPFKTAEGAIRGLETGKHDGTSAYAAPWLELEFWDSLAEAFMRYFGQAITLQVDTAGLLRSQKAIAKANAAAQ--------------SLEDSLTDSKTG----TTEAATPDGDIGNLVNSITGGASVPTATVREESNRSSGGGNGDTQEG---------------------------------------------------GARLQANDEGGRQXXXXXXXXXXXXXXXXXXXGEVSNASEKRLEMXXXXXXXHLGRADRLGIIRKTVPRERRMAVLQRLFHLAQAPADEVERLVTCVKELKNNSSPAEIRDVNLLKTWQGVREERAPAWEEATEQVRLAAAAAAAIGAQESLPAA 334
BLAST of mRNA_L-elsbetiae_contig2093.6331.1 vs. uniprot
Match: A0A6H5KGI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI2_9PHAE) HSP 1 Score: 195 bits (496), Expect = 1.070e-53 Identity = 158/331 (47.73%), Postives = 183/331 (55.29%), Query Frame = 3 Query: 144 ASPWLELEFWDSLAEAFLRYFGKAITLQVDTAGLLRAQRAAAKSQATAQXXXXXXXXXXXXXSSVENTPAASASGVSGTTADASGKDGXXXXXSSSISDAA--PTSPSQRRSPAGSGGRFGDATAGDDDGDNKADGDAAGLPAVSPEDVSVSVVDSIAAAAAAGLDGEEGGLLEGGDGAQAEAEGEGGVGAVDA-SDPSAARLEMLPMGAVAHLSRRDRLGIIRKTVPTERRMLVLQRLFHLAQAPAVEVELLVASVKELKDNSSSAEIRDVNLLQTWQGVREERDAAWERATEQVRLAADSAESAPAADLEEGLESENAVTGDDDIKATG 1127 A+PWLELEFWDSLAEAF+RYFG+AITLQVDTAGL+RAQ+A ++ A AQ S+E++ S +G T +A+ +G ++I+ A PT+ + S SGG GD G A L A+ EEGG G S+ S RLEMLPMGAV HL R DRLGIIRKTVP ERRM VLQRLFHLAQAPA EVE LV VK LK NSS AEIRDVNLL+TWQGVREER AWE ATEQVRLAA + + A ES A DD+ ATG Sbjct: 10 AAPWLELEFWDSLAEAFMRYFGQAITLQVDTAGLMRAQKAIVRANAAAQ--------------SLEDSLTDSKTG----TTEAATPNGDIGNLLNNITGDASVPTASVREESNRSSGGGNGDTQEG-----------GARLQAI-----------------------EEGGRQGGNXXXXXXXXXXXXXXXXXXXSNASEKRLEMLPMGAVGHLGRADRLGIIRKTVPRERRMAVLQRLFHLAQAPAEEVERLVTHVKGLKSNSSPAEIRDVNLLKTWQGVREERATAWEEATEQVRLAAAATAAIGA------QESVPAAKDGDDVAATG 282 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2093.6331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2093.6331.1 >prot_L-elsbetiae_contig2093.6331.1 ID=prot_L-elsbetiae_contig2093.6331.1|Name=mRNA_L-elsbetiae_contig2093.6331.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=380bp MHEILGEVWEPFKTAAGAIRGLEADASPWLELEFWDSLAEAFLRYFGKAIback to top mRNA from alignment at L-elsbetiae_contig2093:12144..19221- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2093.6331.1 ID=mRNA_L-elsbetiae_contig2093.6331.1|Name=mRNA_L-elsbetiae_contig2093.6331.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7078bp|location=Sequence derived from alignment at L-elsbetiae_contig2093:12144..19221- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2093:12144..19221- >mRNA_L-elsbetiae_contig2093.6331.1 ID=mRNA_L-elsbetiae_contig2093.6331.1|Name=mRNA_L-elsbetiae_contig2093.6331.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2280bp|location=Sequence derived from alignment at L-elsbetiae_contig2093:12144..19221- (Laminarionema elsbetiae ELsaHSoW15)back to top |