mRNA_L-elsbetiae_contig209.6322.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig209.6322.1
Unique NamemRNA_L-elsbetiae_contig209.6322.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig209.6322.1 vs. uniprot
Match: A0A6H5JDI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI9_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.340e-18
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:  151 EELDPLPELPETGDDRFFTKDALDFQYTTVPAENNPLFPTWGSTGAEMAAIGAA 312
            EELDPLPELPE+ D+RFFTK+AL+FQY T PAEN PLFPTWGSTGAEMAAIGAA
Sbjct:    7 EELDPLPELPESADERFFTKEALEFQYPTGPAEN-PLFPTWGSTGAEMAAIGAA 59
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig209.6322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDI9_9PHAE1.340e-1885.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig209contigL-elsbetiae_contig209:8533..12478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_001130.1
Exons2
Model size721
Cds size720
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815858.1561296-CDS-L-elsbetiae_contig209:8532..86851622815858.1561296-CDS-L-elsbetiae_contig209:8532..8685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig209 8533..8685 +
1691683150.315451-CDS-L-elsbetiae_contig209:8532..86851691683150.315451-CDS-L-elsbetiae_contig209:8532..8685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig209 8533..8685 +
1622815858.1667743-CDS-L-elsbetiae_contig209:11911..124781622815858.1667743-CDS-L-elsbetiae_contig209:11911..12478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig209 11912..12478 +
1691683150.3257089-CDS-L-elsbetiae_contig209:11911..124781691683150.3257089-CDS-L-elsbetiae_contig209:11911..12478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig209 11912..12478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig209.6322.1prot_L-elsbetiae_contig209.6322.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig209 8533..12478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig209.6322.1

>prot_L-elsbetiae_contig209.6322.1 ID=prot_L-elsbetiae_contig209.6322.1|Name=mRNA_L-elsbetiae_contig209.6322.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=240bp
GNRRDSTRVISHRDLAYCTQQLDTPGAERGRCVAFALTMEDSRDNYADIL
EELDPLPELPETGDDRFFTKDALDFQYTTVPAENNPLFPTWGSTGAEMAA
IGAAAAANAMTPAAAVAGTSPSPSPSLSPSPSPPSAVGSATVVAAGSPSK
STLRAARSGGGAGSKKRALPNVPPEPMLPNQGRSSRGRGVVPTAATVVAA
VPSTSCTTADRTVFLRERLGGESVSSGNSSTSAGSGSDNG
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mRNA from alignment at L-elsbetiae_contig209:8533..12478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig209.6322.1 ID=mRNA_L-elsbetiae_contig209.6322.1|Name=mRNA_L-elsbetiae_contig209.6322.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3946bp|location=Sequence derived from alignment at L-elsbetiae_contig209:8533..12478+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAACAGAAGAGATAGCACTCGCGTTATATCTCACAGAGACCTTGCGTA
CTGTACACAGCAGCTTGATACACCAGGAGCGGAGAGAGGACGCTGCGTTG
CGTTTGCGCTAACGATGGAGGATAGCCGGGATAACTATGCAGATATCCTC
GAGGTGAGAAGAAGGGTCTCTCTCCGCGCAGCGCTGACTTGCGTGCCACG
TTTGCTCTCTGTGTCCAGAGAGGGAGAGAGAGACGGGGGGGGGGGGGGGG
GGGGAGAAAACAAGGCCGGGGGGAGGGAGGCCACGCTGGGAGAGCTGTGC
CGGCCNNNNNNNNNNGGGGAGGGGCGCCCCCCCGCGCGCGGGGGGGGGGG
GGGGGCGGTGCGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGAGGGAGACAAAACGGACGTGGGTAGTGAAGCCACGCT
TGGAGAGCTGTGCCGGCCTCATGTTTCATGGGGTGGTGTTCTCGTAAAAA
AGTAAAAAGTGCGGGCCGGTCCTCTTTTATACGAAGTATCTTTTATTCTG
GTTGTTCGCCGGCCACCCTGCTGTTGTTTCGTAAATTTTGCGCCAACCCG
ACGCCGGTGGCTCTATCCAAGCGGGCGTGGAGGGCAAGCCGAGACCGGTT
GATAACACGTTTGGGTCCTCTCTCTTTACCGTTTTCGTGCGGGCCACACA
CACACCCGATTGATTGCTCTTTTGGGAAAAAATAAACGTTTGCATGCACA
CACATCAAGAGCGAGAGAGGGAGAGAGGCAGGTGTGTACATACGTCAGCA
AGAGTGTCACGAGAGAGAGACATAGAGCGGCTGGAACACAGTTGACGTGG
TTTATGTCACGGTTCTGTCTTGTAAGCCACACGGTTCCTTTGACTTGGGT
TGGTCGGTGAGAGCGCGAAGACTCTTTCCTCGACTCTTTCCTCGACTCTT
TCCTCGTTGCTGTTGCTGTTGTGTTTCGGTAAAATAGGCTGCGCTTTCAG
TCAAAAAAATTGATGAGATAGAGCCACTGAGCCACTGCTCTGTGCTCGCG
TGTGTGTGGCGTCTGAAGGCTACAGCAGTACAATAGGCGCCCAAAAGCCA
CGTGCTTGCGAAGACGAGGCGCACACTTGTTCATAGACTAGTGAATCGCT
TGCAAAGTTTGGCGATGGTGTGCGGCTAAACGCATAGAGCAGGGCATAGA
GTAGTCTCTCTGTGCAACGACCAACGACCAAGTTGAACACCGCAGCAGAG
GCACCACGGCAGCAGCATCAAATTGACTTTCGGGTTGGCGTTTTGCAGAA
ATGTTCATCCTGTCCGGCGATCGATTGGCTCCGGGACTGCGCCCAGCCCC
CTGAAGTTGTCCCTCTGCCGGTGTATAAATACCCTTGCGACGACTGCTCT
TGCTCTGCCGCTGGCCACCGATATTATCTTGTGCGAGAAGCCTGCGCTGG
TTGTTCGCCTGTTGAGAGATGTGAGATTGTGAGATTGTTGATTGGATACT
ACATGGGATTACAAAGCCTGCAAGTGCGGCGCAGGTGCCTCGCCCCTTTC
CCCTCGCCATGAGCGTGGAATACAGGCTTGCTGGTTGTAGTCTAATATCC
ACGGCGAAATTACTGTTGTTTTTAGGCTCTCTGTGTGCTATGTACATGAC
TACTGCCGCAGTAGCGTACCCGCCAACATGTGTGCAGTGTACAAGATACC
TTTCTTATTAAGGAAGTAGGATAGTATAATATAACCTACATACTACCGGT
ACACCTTTCCGTCTGGCAGTTATCGCCAGATTTGAGATATCGAACAATGT
CGCATTTACCGGACTACCTAGTAGCTTGACATCTAACGTGAAACGCCACG
TAATATTTGTAGACAGCTACTGCTGGGTTATCGGCTGCTGATGACCCACT
GGGTTGTCGCAGGCTTCCATCAGTTTTCACGTTTTCACCGAAACAAAAAC
AACTGCTGTGGCTAATGAAGGCCGATTCTTTCAGTAGACTCGTAAACGTA
GTGGCGCCCAGGGCTGACATCTCTAATCGAAGCAGGCAAGCCGGCCGATG
TGAAATAAAATCAAACCGAGGCTGTGCGATTCTAATTCGAACAGCAGTCG
ACATCGACATTTCTCCCGGCGTTAACCCTTTTGGGACTTCAAGGGGGTTT
TGGCGAATACAAAAAGTGATCATTGAGACGCCTGGTTTTGTGCGGACCTG
GGCTAGTCGGCAAATCAGGACGATAGCATGAACCACCGATGTGGTCACAT
GGCCACCCAGATGGGATGGCACAGCAGCGGCAGGGTTGTAGCGATATGTT
TCGTCTCCGGCAGCCTGCTACAGCCACCGCCGCCGCCGCCGCTGCTTGGC
TGTTGCATTCGGTAGTTGGGGGGTTATTGACGAAATCGGTTTTGCTCTCT
TGCTCTCATCCCACACATCACATGACGCAGCATGCCAGGCATACAGGACA
CACATACACACCCACACCACCACCACAAGTACATACATATCTTCAACAGC
ACATCGCCAAACACCTCCTCGATTTCCGTCTACATACACCAACAACCGGT
GTAGATCGATCTGCTTGCTGTTGCCGTTGTGTATTATTGCAAAGTAACCG
AGCTCCAGAGGCGGGACTCTATCCGGCGCCCCCCCGAGAAGCACAGAAGT
ACGCTATTGCCGCAGGGCACTTCGGTGCCAATTTAGTGATCATTTTTTGT
GATCATATGGTATATACTGAATTTAGAGTACTTTCAGAAGAGTTCAGAGC
CCGGGACAGCGCTACTTCGAGCGAACACTAGCAGTGACGTTTTGAGGGCC
GATAAAGCTTTCTAGTGTGCCAACAGACGTCCCCAGTGTGTTACCGGGCG
GCGACACGGCCGCGGTGCGTGTTCTGCTGCTGGGTGGACTTCTGCAAGCA
GAAGTCTCTTTCAGCGCGGAGAACAGAGAACACGTGTGTATCTGATGTGC
GGACCCGTTTTTTTCGAATATTCCCGCCGCGTTTTCTGGGCTGCTCGCCT
TGCGGCCTGTCACGAGCCTAGTCCCAGAGGGGTTAGGTGACGGTAGATAC
GAAAGGACGGAAGAGTGCGCGAGCATTTTCCAAACGGCATTCCTCTCCCA
AGGAAACCTTAGCGACAACAACCACAGCTGTGTGCGAGTTTTTGAATGTT
TCAATTGTAATTGTACACTTAGTTGCATGAAGCACACGCCGACGGATGAT
TATGGGATATACTTGTACGTACGTGTGGTGTCTACACACATACCAATCCT
AATCCTTCCTCGCATCGAACCCAGAAACCATTGCGCGCGCCCCCCACCCG
AGACACCCTCGCCCTTACCCCCGTCCCCACCCTCCCGTTTCCCCTCCACG
CTTTGAAACCCTCGCAAACCAACGAGCAGGAACTGGACCCTTTGCCGGAG
CTGCCGGAGACCGGCGACGACCGCTTCTTCACCAAAGACGCGCTGGATTT
CCAGTACACGACCGTCCCGGCGGAGAACAACCCCCTCTTCCCGACCTGGG
GCTCCACGGGGGCCGAGATGGCGGCGATTGGTGCCGCCGCCGCCGCCAAT
GCGATGACCCCGGCGGCGGCGGTGGCGGGCACATCGCCGTCACCATCGCC
ATCCCTGTCCCCGTCGCCGTCGCCGCCCTCGGCGGTCGGGTCGGCTACCG
TCGTGGCGGCGGGCTCGCCGTCGAAATCAACACTGCGCGCGGCGCGCAGC
GGTGGCGGCGCCGGCAGTAAGAAACGCGCTCTGCCGAATGTACCGCCAGA
ACCGATGCTCCCGAATCAAGGGCGCTCTTCTCGTGGGCGGGGTGTGGTGC
CGACGGCGGCGACGGTGGTGGCGGCGGTACCATCAACATCATGCACGACC
GCGGACCGGACGGTGTTCCTGAGGGAGAGGCTCGGGGGGGAGAGCGTATC
GTCGGGCAACTCGTCGACCAGCGCGGGATCGGGCTCGGACAACGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig209:8533..12478+

>mRNA_L-elsbetiae_contig209.6322.1 ID=mRNA_L-elsbetiae_contig209.6322.1|Name=mRNA_L-elsbetiae_contig209.6322.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1440bp|location=Sequence derived from alignment at L-elsbetiae_contig209:8533..12478+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAACAGAAGAGATAGCACTCGCGTTATATCTCACAGAGACCTTGCGTA
CTGTACACAGCAGCTTGATACACCAGGAGCGGAGAGAGGACGCTGCGTTG
CGTTTGCGCTAACGATGGAGGATAGCCGGGATAACTATGCAGATATCCTC
GAGGGCAACAGAAGAGATAGCACTCGCGTTATATCTCACAGAGACCTTGC
GTACTGTACACAGCAGCTTGATACACCAGGAGCGGAGAGAGGACGCTGCG
TTGCGTTTGCGCTAACGATGGAGGATAGCCGGGATAACTATGCAGATATC
CTCGAGGAACTGGACCCTTTGCCGGAGCTGCCGGAGACCGGCGACGACCG
CTTCTTCACCAAAGACGCGCTGGATTTCCAGTACACGACCGTCCCGGCGG
AGAACAACCCCCTCTTCCCGACCTGGGGCTCCACGGGGGCCGAGATGGCG
GCGATTGGTGCCGCCGCCGCCGCCAATGCGATGACCCCGGCGGCGGCGGT
GGCGGGCACATCGCCGTCACCATCGCCATCCCTGTCCCCGTCGCCGTCGC
CGCCCTCGGCGGTCGGGTCGGCTACCGTCGTGGCGGCGGGCTCGCCGTCG
AAATCAACACTGCGCGCGGCGCGCAGCGGTGGCGGCGCCGGCAGTAAGAA
ACGCGCTCTGCCGAATGTACCGCCAGAACCGATGCTCCCGAATCAAGGGC
GCTCTTCTCGTGGGCGGGGTGTGGTGCCGACGGCGGCGACGGTGGTGGCG
GCGGTACCATCAACATCATGCACGACCGCGGACCGGACGGTGTTCCTGAG
GGAGAGGCTCGGGGGGGAGAGCGTATCGTCGGGCAACTCGTCGACCAGCG
CGGGATCGGGCTCGGACAACGGCGAACTGGACCCTTTGCCGGAGCTGCCG
GAGACCGGCGACGACCGCTTCTTCACCAAAGACGCGCTGGATTTCCAGTA
CACGACCGTCCCGGCGGAGAACAACCCCCTCTTCCCGACCTGGGGCTCCA
CGGGGGCCGAGATGGCGGCGATTGGTGCCGCCGCCGCCGCCAATGCGATG
ACCCCGGCGGCGGCGGTGGCGGGCACATCGCCGTCACCATCGCCATCCCT
GTCCCCGTCGCCGTCGCCGCCCTCGGCGGTCGGGTCGGCTACCGTCGTGG
CGGCGGGCTCGCCGTCGAAATCAACACTGCGCGCGGCGCGCAGCGGTGGC
GGCGCCGGCAGTAAGAAACGCGCTCTGCCGAATGTACCGCCAGAACCGAT
GCTCCCGAATCAAGGGCGCTCTTCTCGTGGGCGGGGTGTGGTGCCGACGG
CGGCGACGGTGGTGGCGGCGGTACCATCAACATCATGCACGACCGCGGAC
CGGACGGTGTTCCTGAGGGAGAGGCTCGGGGGGGAGAGCGTATCGTCGGG
CAACTCGTCGACCAGCGCGGGATCGGGCTCGGACAACGGC
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