mRNA_L-elsbetiae_contig209.6324.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig209.6324.1
Unique NamemRNA_L-elsbetiae_contig209.6324.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig209.6324.1 vs. uniprot
Match: A0A6H5JDI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI9_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 7.390e-35
Identity = 133/249 (53.41%), Postives = 143/249 (57.43%), Query Frame = 2 
Query:   11 AAVEFTPADVLARDAASAFLKDILSRPGMACATPVRRFLELEYVDGTLRGGLVDHSRSSAARQVACLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPGVETPATTSSGGDSGDLEPSRSDGEQQPPSV-----------------------VAPRPAQILPAHPDAARDLAAVCRCLGELGASAFTPAPYSSSSVPPAFRGAA-PYWS--------AVGDEAGSGA----GDGVVPQRGVALLA 649
            AA+EFTPADVLA DAAS FLKD+L RPGMA ATP RRFLELEY+DGTLRGG+ D SR++AARQVA LAA    XXXXXXXXXXXXX       XXXXXXX                                                        V PRPAQ LPAHPDAARDLAAVCRCLGELGASAFT     SSS  PA RGAA PYWS        A  D+  +GA    G+ V  Q GVAL+A
Sbjct:  465 AAIEFTPADVLAPDAASGFLKDLLVRPGMAWATPARRFLELEYLDGTLRGGVADDSRATAARQVASLAAFTTAXXXXXXXXXXXXXDVVESNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVPRPAQTLPAHPDAARDLAAVCRCLGELGASAFT-----SSS--PALRGAAAPYWSSPAKTATAAARDKGNTGAAASGGEDVATQPGVALVA 706
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig209.6324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDI9_9PHAE7.390e-3553.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig209contigL-elsbetiae_contig209:13294..14235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size942
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig209.6324.1prot_L-elsbetiae_contig209.6324.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig209 13388..13945 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815858.102694-UTR-L-elsbetiae_contig209:13293..133871622815858.102694-UTR-L-elsbetiae_contig209:13293..13387Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig209 13294..13387 +
1691683150.2855575-UTR-L-elsbetiae_contig209:13293..133871691683150.2855575-UTR-L-elsbetiae_contig209:13293..13387Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig209 13294..13387 +
1622815858.1256511-UTR-L-elsbetiae_contig209:13945..142351622815858.1256511-UTR-L-elsbetiae_contig209:13945..14235Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig209 13946..14235 +
1691683150.3065164-UTR-L-elsbetiae_contig209:13945..142351691683150.3065164-UTR-L-elsbetiae_contig209:13945..14235Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig209 13946..14235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815858.1150372-CDS-L-elsbetiae_contig209:13387..139451622815858.1150372-CDS-L-elsbetiae_contig209:13387..13945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig209 13388..13945 +
1691683150.2952418-CDS-L-elsbetiae_contig209:13387..139451691683150.2952418-CDS-L-elsbetiae_contig209:13387..13945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig209 13388..13945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig209.6324.1

>prot_L-elsbetiae_contig209.6324.1 ID=prot_L-elsbetiae_contig209.6324.1|Name=mRNA_L-elsbetiae_contig209.6324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=186bp
MACATPVRRFLELEYVDGTLRGGLVDHSRSSAARQVACLAALTTAAAAAA
SAAQGAFAAGDEDGKGAAAAAAVPGVETPATTSSGGDSGDLEPSRSDGEQ
QPPSVVAPRPAQILPAHPDAARDLAAVCRCLGELGASAFTPAPYSSSSVP
PAFRGAAPYWSAVGDEAGSGAGDGVVPQRGVALLA*
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mRNA from alignment at L-elsbetiae_contig209:13294..14235+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig209.6324.1 ID=mRNA_L-elsbetiae_contig209.6324.1|Name=mRNA_L-elsbetiae_contig209.6324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig209:13294..14235+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGGGGGCGGCGGTGGAGTTCACCCCGGCGGACGTGCTGGCTCGCG
ATGCCGCGTCGGCGTTCCTCAAGGATATCCTCTCTAGACCGGGCATGGCG
TGTGCCACGCCGGTCCGGAGGTTCCTCGAGCTGGAGTACGTCGACGGAAC
TTTGAGGGGCGGATTGGTCGACCACAGCCGTTCGAGTGCCGCCCGACAAG
TCGCCTGTCTGGCCGCCCTGACCACCGCCGCCGCCGCCGCCGCCTCGGCC
GCTCAGGGTGCCTTCGCTGCCGGAGACGAAGACGGCAAAGGCGCGGCGGC
GGCGGCGGCGGTGCCGGGTGTGGAGACGCCAGCGACGACCTCGAGCGGAG
GCGACAGCGGGGACTTGGAGCCTAGCAGGTCCGACGGAGAACAGCAGCCG
CCGTCGGTTGTTGCCCCGCGCCCGGCCCAAATCTTGCCCGCTCACCCAGA
CGCGGCGCGGGACCTCGCGGCGGTGTGCCGCTGCCTCGGCGAGCTGGGAG
CCTCAGCGTTTACCCCGGCGCCCTATTCTTCCTCCTCGGTGCCGCCGGCG
TTCAGGGGGGCGGCGCCGTACTGGTCCGCGGTGGGAGACGAAGCCGGGTC
GGGCGCGGGGGACGGCGTGGTGCCGCAGCGGGGTGTCGCGCTGTTGGCGT
GAACGAGCGGATGGAGGGAGGAATGGACAAATGAATACACGGATGGAAGG
ATGAACGAATGGACCAACGGACCAACGGACGGATGGATCAATGAACGAAT
GGAAGGAGACGGAAGGATGCACGGAAGGACGCCAAGGAGGGACACAAAGG
AAGGACACAAAGAAAGTTGGCTGTCTATCGGAGGGGGGGGGTCATGGGTC
GAGGGAGGCGCCGGAACATGCCCTCGCGTGGAAGCGCGCCTCTTGGAAGC
GCGCCTCTCAAAGGGACACAAAGAAAGTTGGCTGTCTATCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig209:13294..14235+

>mRNA_L-elsbetiae_contig209.6324.1 ID=mRNA_L-elsbetiae_contig209.6324.1|Name=mRNA_L-elsbetiae_contig209.6324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1116bp|location=Sequence derived from alignment at L-elsbetiae_contig209:13294..14235+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTGTGCCACGCCGGTCCGGAGGTTCCTCGAGCTGGAGTACGTCGA
CGGAACTTTGAGGGGCGGATTGGTCGACCACAGCCGTTCGAGTGCCGCCC
GACAAGTCGCCTGTCTGGCCGCCCTGACCACCGCCGCCGCCGCCGCCGCC
TCGGCCGCTCAGGGTGCCTTCGCTGCCGGAGACGAAGACGGCAAAGGCGC
GGCGGCGGCGGCGGCGGTGCCGGGTGTGGAGACGCCAGCGACGACCTCGA
GCGGAGGCGACAGCGGGGACTTGGAGCCTAGCAGGTCCGACGGAGAACAG
CAGCCGCCGTCGGTTGTTGCCCCGCGCCCGGCCCAAATCTTGCCCGCTCA
CCCAGACGCGGCGCGGGACCTCGCGGCGGTGTGCCGCTGCCTCGGCGAGC
TGGGAGCCTCAGCGTTTACCCCGGCGCCCTATTCTTCCTCCTCGGTGCCG
CCGGCGTTCAGGGGGGCGGCGCCGTACTGGTCCGCGGTGGGAGACGAAGC
CGGGTCGGGCGCGGGGGACGGCGTGGTGCCGCAGCGGGGTGTCGCGCTGT
TGGCGTGAATGGCGTGTGCCACGCCGGTCCGGAGGTTCCTCGAGCTGGAG
TACGTCGACGGAACTTTGAGGGGCGGATTGGTCGACCACAGCCGTTCGAG
TGCCGCCCGACAAGTCGCCTGTCTGGCCGCCCTGACCACCGCCGCCGCCG
CCGCCGCCTCGGCCGCTCAGGGTGCCTTCGCTGCCGGAGACGAAGACGGC
AAAGGCGCGGCGGCGGCGGCGGCGGTGCCGGGTGTGGAGACGCCAGCGAC
GACCTCGAGCGGAGGCGACAGCGGGGACTTGGAGCCTAGCAGGTCCGACG
GAGAACAGCAGCCGCCGTCGGTTGTTGCCCCGCGCCCGGCCCAAATCTTG
CCCGCTCACCCAGACGCGGCGCGGGACCTCGCGGCGGTGTGCCGCTGCCT
CGGCGAGCTGGGAGCCTCAGCGTTTACCCCGGCGCCCTATTCTTCCTCCT
CGGTGCCGCCGGCGTTCAGGGGGGCGGCGCCGTACTGGTCCGCGGTGGGA
GACGAAGCCGGGTCGGGCGCGGGGGACGGCGTGGTGCCGCAGCGGGGTGT
CGCGCTGTTGGCGTGA
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