prot_L-elsbetiae_contig209.6323.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig209.6323.1
Unique Nameprot_L-elsbetiae_contig209.6323.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length240
Homology
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BLAST of mRNA_L-elsbetiae_contig209.6323.1 vs. uniprot
Match: A0A6H5JDI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI9_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 4.070e-38
Identity = 88/138 (63.77%), Postives = 94/138 (68.12%), Query Frame = 0 
Query:  112 NSIDAGGAYASWGSLVKPFKQQWDHVEGPAAAAWSVGGGGSELASSPLVSGS-----------------VCSVFSAEPRPNSTTAFSVEQCSAQAHPMAVASYVLRVRCAGGAHIVRRTWDDIVSLCTMLSRD-LARS 231
            NS   GG YASW  LVKP KQQWDH+EGP+A A     GG+    S   +                   VCSVFSA+P PNST AFSVEQCSAQAHP AVASYVLRVRCAGGAHIVRRTWDDIV+LCTML RD LARS
Sbjct:  323 NSGGLGGGYASWDVLVKPLKQQWDHIEGPSAEARGGRRGGAGPKPSAYSAXXXXXXXXXXXXXXXXXXXVCSVFSAQPCPNSTAAFSVEQCSAQAHPAAVASYVLRVRCAGGAHIVRRTWDDIVNLCTMLDRDVLARS 460
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig209.6323.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDI9_9PHAE4.070e-3863.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..45
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 46..240
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 26..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 34..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig209contigL-elsbetiae_contig209:12515..13234 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig209.6323.1mRNA_L-elsbetiae_contig209.6323.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig209 12515..13235 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig209.6323.1 ID=prot_L-elsbetiae_contig209.6323.1|Name=mRNA_L-elsbetiae_contig209.6323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=240bp
AAKENGNRKRNRREVARRAKKPFMRSGSAAAAANAPSAATTSAVAAPSGE
GVSASQAPTKAALRTRYGGSSSKSNRRHRKSRGREGSGASDGSRGSSVAG
RSTTGSVSSTSNSIDAGGAYASWGSLVKPFKQQWDHVEGPAAAAWSVGGG
GSELASSPLVSGSVCSVFSAEPRPNSTTAFSVEQCSAQAHPMAVASYVLR
VRCAGGAHIVRRTWDDIVSLCTMLSRDLARSPPEAAGAAS
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