mRNA_L-elsbetiae_contig20896.6319.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20896.6319.1
Unique NamemRNA_L-elsbetiae_contig20896.6319.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20896.6319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20896contigL-elsbetiae_contig20896:531..2207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size226
Cds size207
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20896.6319.1prot_L-elsbetiae_contig20896.6319.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20896 548..2207 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815857.8905516-UTR-L-elsbetiae_contig20896:530..5471622815857.8905516-UTR-L-elsbetiae_contig20896:530..547Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20896 531..547 +
1691683150.1834407-UTR-L-elsbetiae_contig20896:530..5471691683150.1834407-UTR-L-elsbetiae_contig20896:530..547Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20896 531..547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815857.901016-CDS-L-elsbetiae_contig20896:547..6141622815857.901016-CDS-L-elsbetiae_contig20896:547..614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20896 548..614 +
1691683150.1935053-CDS-L-elsbetiae_contig20896:547..6141691683150.1935053-CDS-L-elsbetiae_contig20896:547..614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20896 548..614 +
1622815857.9116685-CDS-L-elsbetiae_contig20896:1296..13551622815857.9116685-CDS-L-elsbetiae_contig20896:1296..1355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20896 1297..1355 +
1691683150.2024693-CDS-L-elsbetiae_contig20896:1296..13551691683150.2024693-CDS-L-elsbetiae_contig20896:1296..1355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20896 1297..1355 +
1622815857.9238775-CDS-L-elsbetiae_contig20896:2126..22071622815857.9238775-CDS-L-elsbetiae_contig20896:2126..2207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20896 2127..2207 +
1691683150.2137322-CDS-L-elsbetiae_contig20896:2126..22071691683150.2137322-CDS-L-elsbetiae_contig20896:2126..2207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20896 2127..2207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20896.6319.1

>prot_L-elsbetiae_contig20896.6319.1 ID=prot_L-elsbetiae_contig20896.6319.1|Name=mRNA_L-elsbetiae_contig20896.6319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=69bp
MEDYLTLSGPPYPLRGNNYYTAESERPRKKRLRRSFQRTPLPDKTFLERT
SNLGEAAVGHLDRRRSAPP
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mRNA from alignment at L-elsbetiae_contig20896:531..2207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20896.6319.1 ID=mRNA_L-elsbetiae_contig20896.6319.1|Name=mRNA_L-elsbetiae_contig20896.6319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1677bp|location=Sequence derived from alignment at L-elsbetiae_contig20896:531..2207+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGAGAGGCGCAGTTGATGGAGGACTACCTCACCTTGTCGGGGCCCCCG
TATCCGCTCAGGGGCAACAATTACTACACTGCAGGTAATGAAGGCCGCAT
ACAATACATATCCTGAACAGACACGCCATGGTGCATGTCATAAGGAAGAA
GACGTTCCTGAGAATGTTTGCGCCAGTGGTTAAAAACTGCGGTTCAGTGC
GATTTGTCTGTATTATATTTAACCCATGCCTAAAATGATGTCTATGTGCT
ACAATGTACCATACATTGATATTGATATAGCAGTGCGCCACTCAATGTCA
ATATTTAGTAGCTCTGCGCTGGTCCCCTCTGCGCTGGTCCTGTGCGTAGT
AATTAATGTATAGAAATGTCAGCAGTCTACGTCCAGTCTGCGCCAAAGTC
GTTCCAGAGGGGCTGTTGCATTCCTTTACTCTGAGGGTTTGGGAATCTGG
TGCATGTCAAAGCAGCTGGTCATGTAGTCTTAGAATCGAGTATGTACCGC
ATACGGTTTAAGACAACACACCGCCTGGACTGGTTTTGAAAAGCTCTTGT
ACTCTACGTCGAGAATAGAGTCAGTCCCGAAAACGTTCGGCTTTTGAAAT
ATATCATAAAAGCTGTTCTAAACCGCCTCGTTTGGTTGTTGATAAGAGTA
ACACTCGTTGCGGAGTTACCAAGGTTTAAAACCGGGCTAGGGGTGTGATT
TATCTTGTGTCGTATACGGCACGGTAGGAGTACGTCGTAATTTGGTTGTT
CTGTCGTCGTTTCCAGAGTCCGAGAGGCCGCGAAAGAAACGCTTGCGGCG
GTCTTTCCAGAGAACCCCCCTTCCGGTGCGATCACGTCTCCCACGATTTG
CGTGTGTGTTTGTCCGTGTATGTGTGTGTGTTTTTGTTTTTATATTGGCT
GCTAGCGATAACAGTAGTGCCCAGTTGGGCTGCGCAAAAAACATGTCAGG
CCCAGGGGCTTCGTAGCGATTACAAGTCCAGCGACGAGCGGGCCCGAACT
TGTAGCAATCGTTAAGTCCAGCGACCAGACCCCCCAAAACTCCGGAGTAA
GATGTGTAGACGCGCCCGGAATGCCAAACATTATCCTCTTGCGGGAATAT
TTTTGTAAAACTCACGACATCCATACGTATAGCACCAAACGCATGTACCA
CTGTTCATAAAAGACTCCCCCGAACCCAACGATTTCGCTGATGAGGTGTG
CTCCGATGTTGCTGTAGATGAAGAAACGCCCGTGCAAGGCCCCGCCCTAA
GCCTAGAGGGTCCACTGATGTGTGTTCCCGTTCGTGCGTGTTGTTGGTGT
TGTTGTCGTGAAGGAAGAACCCTTGTAGCCATAAGTGAATAGCCCACGTG
CATAGGTCCACTTCTGACGTGTGTTTCCGCGATTTTTAAGGTTGGTTCCG
GTTGTTGTTGCCGTAGAGCGAGGGTGGAGTCGCTGGACCCGTCTCGCTCA
CGTCGCTCTTTCCTTGCCTCGTCTCGTACATGTTATCTCCGTGCGTGTTT
GATGTTGTTCGTGTCTCTTGTTAATTTTCTTTCGCGTCTCTCTCTCTCTC
TTTTTGTTTTTTTGTCCTACTCTGCTGTTGTCTGTTGTCGCGGCAGGACA
AAACTTTTCTGGAGCGCACGAGCAATTTAGGTGAAGCAGCCGTTGGGCAC
CTGGATCGACGCCGTTCAGCGCCGCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20896:531..2207+

>mRNA_L-elsbetiae_contig20896.6319.1 ID=mRNA_L-elsbetiae_contig20896.6319.1|Name=mRNA_L-elsbetiae_contig20896.6319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=414bp|location=Sequence derived from alignment at L-elsbetiae_contig20896:531..2207+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGACTACCTCACCTTGTCGGGGCCCCCGTATCCGCTCAGGGGCAA
CAATTACTACACTGCAGATGGAGGACTACCTCACCTTGTCGGGGCCCCCG
TATCCGCTCAGGGGCAACAATTACTACACTGCAGAGTCCGAGAGGCCGCG
AAAGAAACGCTTGCGGCGGTCTTTCCAGAGAACCCCCCTTCCGAGTCCGA
GAGGCCGCGAAAGAAACGCTTGCGGCGGTCTTTCCAGAGAACCCCCCTTC
CGGACAAAACTTTTCTGGAGCGCACGAGCAATTTAGGTGAAGCAGCCGTT
GGGCACCTGGATCGACGCCGTTCAGCGCCGCCTGACAAAACTTTTCTGGA
GCGCACGAGCAATTTAGGTGAAGCAGCCGTTGGGCACCTGGATCGACGCC
GTTCAGCGCCGCCT
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