mRNA_L-elsbetiae_contig2089.6317.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2089.6317.1
Unique NamemRNA_L-elsbetiae_contig2089.6317.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2089.6317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2089contigL-elsbetiae_contig2089:18768..19915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size515
Cds size438
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2089.6317.1prot_L-elsbetiae_contig2089.6317.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2089 19478..19915 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815857.7034314-UTR-L-elsbetiae_contig2089:18767..188111622815857.7034314-UTR-L-elsbetiae_contig2089:18767..18811Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2089 18768..18811 +
1691683150.0564415-UTR-L-elsbetiae_contig2089:18767..188111691683150.0564415-UTR-L-elsbetiae_contig2089:18767..18811Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2089 18768..18811 +
1622815857.7144523-UTR-L-elsbetiae_contig2089:19446..194771622815857.7144523-UTR-L-elsbetiae_contig2089:19446..19477Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2089 19447..19477 +
1691683150.068134-UTR-L-elsbetiae_contig2089:19446..194771691683150.068134-UTR-L-elsbetiae_contig2089:19446..19477Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2089 19447..19477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815857.725313-CDS-L-elsbetiae_contig2089:19477..199151622815857.725313-CDS-L-elsbetiae_contig2089:19477..19915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2089 19478..19915 +
1691683150.0784664-CDS-L-elsbetiae_contig2089:19477..199151691683150.0784664-CDS-L-elsbetiae_contig2089:19477..19915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2089 19478..19915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2089.6317.1

>prot_L-elsbetiae_contig2089.6317.1 ID=prot_L-elsbetiae_contig2089.6317.1|Name=mRNA_L-elsbetiae_contig2089.6317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
MRATPVLSAVALASCRGGGVTGATTTAAAAAVATATVQPLLSSSAGGTAA
RIHSSRGRGGRGGGRQERGNRSRRGNSSRTGLLFQNLPKPISSSSSSSSP
FSSFSKSPMTGPSRIPRRSVHSLKSSSNGSVRGGERSRAHGQNHHP
back to top

mRNA from alignment at L-elsbetiae_contig2089:18768..19915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2089.6317.1 ID=mRNA_L-elsbetiae_contig2089.6317.1|Name=mRNA_L-elsbetiae_contig2089.6317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1148bp|location=Sequence derived from alignment at L-elsbetiae_contig2089:18768..19915+ (Laminarionema elsbetiae ELsaHSoW15)
CAACTTCATCGTGCGTGTGGAGGCCGACAAGAGATTTCCACTCGGTGAGG
CTATAGAGCGTATGGGTATGTGTCATTTGGAACCGACTGCAGATGCATGA
CGTTGCAAAATGCGGTGCGATGCAGGCTGCAGCTGAGACCATGCTGAGTC
CTTTCTCTCGTCGCCTTCACATCGTGAACTCCTCGCTCCTTTGTTAGACT
GTGTGGGTGAAAAACTGATATCCCAGGTACTCACGCTGCTATCCTTGCTT
GGTTTGGTTCCTCGCGCTTTGCCTTTTTCCTTGCTTTCGGTCGTTTGGGT
GTTGTCATGCCGCACGGAAACACGGAAACACTCGTATCTATGTACCTAGA
TGCAGCGTGTCTCTCTCCCTCTCTCTCTTCGCTGATTGCAGTAACCTGAT
CTGTGCAGGAGGTTCTCGAAGAATGCAGTAGAAAGCTAAGAATTTTCCCT
CAATCCCCAGCCTGAGAGCATGGGCATTTTCGCTCCCCGCGGTACTGCGG
CACATGATGCCACATACGTCTGATGCCCTCCTCCTGCATGTTCGTTCCCA
GCGCCGTACTGTTGAAGGCATCGCGGTGTACTTTCCCGCGCGCCAACAAC
ATGCACATATTCGAAGAAATTCCATGCAAGCTCACATGCGCTGCGGGCCT
CCCGCTTGGTGCCCCTTCTCCACTGCCAGGATAAAGTGAAGGAGTATTTG
CTGCGAAAGGATGCGTGCTACCCCGGTTCTGTCCGCCGTGGCGCTGGCAT
CCTGCCGAGGCGGCGGCGTGACAGGGGCGACAACAACCGCGGCAGCAGCC
GCAGTAGCGACGGCGACGGTTCAGCCACTCCTGTCCTCATCTGCGGGGGG
CACCGCCGCTCGAATACACTCGTCGCGAGGAAGAGGGGGCAGAGGTGGAG
GGAGACAGGAACGTGGGAATAGAAGCCGCCGCGGCAACAGCAGCCGGACG
GGTCTCCTGTTCCAAAATTTGCCGAAACCGATATCATCCTCCTCTTCCTC
CTCTTCCCCCTTCTCCTCCTTTTCCAAATCGCCGATGACGGGACCGTCAC
GAATACCACGAAGAAGTGTCCATTCGCTCAAATCTAGCAGTAACGGCAGC
GTGAGGGGTGGTGAACGATCTCGGGCGCACGGCCAGAACCATCATCCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2089:18768..19915+

>mRNA_L-elsbetiae_contig2089.6317.1 ID=mRNA_L-elsbetiae_contig2089.6317.1|Name=mRNA_L-elsbetiae_contig2089.6317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig2089:18768..19915+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTGCTACCCCGGTTCTGTCCGCCGTGGCGCTGGCATCCTGCCGAGG
CGGCGGCGTGACAGGGGCGACAACAACCGCGGCAGCAGCCGCAGTAGCGA
CGGCGACGGTTCAGCCACTCCTGTCCTCATCTGCGGGGGGCACCGCCGCT
CGAATACACTCGTCGCGAGGAAGAGGGGGCAGAGGTGGAGGGAGACAGGA
ACGTGGGAATAGAAGCCGCCGCGGCAACAGCAGCCGGACGGGTCTCCTGT
TCCAAAATTTGCCGAAACCGATATCATCCTCCTCTTCCTCCTCTTCCCCC
TTCTCCTCCTTTTCCAAATCGCCGATGACGGGACCGTCACGAATACCACG
AAGAAGTGTCCATTCGCTCAAATCTAGCAGTAACGGCAGCGTGAGGGGTG
GTGAACGATCTCGGGCGCACGGCCAGAACCATCATCCCATGCGTGCTACC
CCGGTTCTGTCCGCCGTGGCGCTGGCATCCTGCCGAGGCGGCGGCGTGAC
AGGGGCGACAACAACCGCGGCAGCAGCCGCAGTAGCGACGGCGACGGTTC
AGCCACTCCTGTCCTCATCTGCGGGGGGCACCGCCGCTCGAATACACTCG
TCGCGAGGAAGAGGGGGCAGAGGTGGAGGGAGACAGGAACGTGGGAATAG
AAGCCGCCGCGGCAACAGCAGCCGGACGGGTCTCCTGTTCCAAAATTTGC
CGAAACCGATATCATCCTCCTCTTCCTCCTCTTCCCCCTTCTCCTCCTTT
TCCAAATCGCCGATGACGGGACCGTCACGAATACCACGAAGAAGTGTCCA
TTCGCTCAAATCTAGCAGTAACGGCAGCGTGAGGGGTGGTGAACGATCTC
GGGCGCACGGCCAGAACCATCATCCC
back to top