mRNA_L-elsbetiae_contig20865.6309.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20865.6309.1
Unique NamemRNA_L-elsbetiae_contig20865.6309.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20865.6309.1 vs. uniprot
Match: D7FUR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR0_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.870e-33
Identity = 60/73 (82.19%), Postives = 63/73 (86.30%), Query Frame = 2 
Query:   74 RAPETAVFSLLMASLTSLPVSVSSRSPLEACAGFLRGTRPAVHEPGTMVPAAGCALGAWLGAIPLCLDWEQPW 292
            RAPETA FSLLM+S TSLPVSV+S  PLEA A FLRGTRPA+HE G MVPAA C LGAWLGAIPLCLDWEQPW
Sbjct:  125 RAPETAAFSLLMSSFTSLPVSVTSHRPLEAFAAFLRGTRPALHELGAMVPAACCVLGAWLGAIPLCLDWEQPW 197
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BLAST of mRNA_L-elsbetiae_contig20865.6309.1 vs. uniprot
Match: UPI00142579EF (phosphatidylinositol-glycan biosynthesis class F protein-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142579EF)

HSP 1 Score: 53.1 bits (126), Expect = 3.950e-6
Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 2 
Query:   83 ETAVFSLLMASLTSLPVSVSSRSPLEACAGFLRGTRPAVHEPGTMVPAAGCALGAWLGAIPLCLDWEQPW 292
            ET +FS+L+++L SLP  + +    EA   F+ G      E   M  A    LGAW+GA+P+ LDW++PW
Sbjct:  140 ETFLFSVLVSTLVSLPCLLVNELDYEAWNRFISGCCLPGVESYVMTVACCSLLGAWVGAVPIPLDWDRPW 209
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BLAST of mRNA_L-elsbetiae_contig20865.6309.1 vs. uniprot
Match: S4RV09_PETMA (Phosphatidylinositol glycan anchor biosynthesis, class F n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RV09_PETMA)

HSP 1 Score: 51.2 bits (121), Expect = 6.560e-6
Identity = 30/73 (41.10%), Postives = 40/73 (54.79%), Query Frame = 2 
Query:   77 APETAVFSLLMASLTSLPVSVSSRSPLEACAG-FLRGTRPAVHEPGTMVPAAGCALGAWLGAIPLCLDWEQPW 292
            A ET VFS+L+ + T+LP        L A    F R    +V E G  V      +GAWLGA+P+ LDW++PW
Sbjct:   30 ARETFVFSILLTTFTALPCLCILGPNLSAWLRVFTRSGAVSVWEQGLCVGTMCTLMGAWLGALPIPLDWDRPW 102
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BLAST of mRNA_L-elsbetiae_contig20865.6309.1 vs. uniprot
Match: UPI0014031A22 (phosphatidylinositol-glycan biosynthesis class F protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014031A22)

HSP 1 Score: 51.2 bits (121), Expect = 1.690e-5
Identity = 30/73 (41.10%), Postives = 40/73 (54.79%), Query Frame = 2 
Query:   77 APETAVFSLLMASLTSLPVSVSSRSPLEACAG-FLRGTRPAVHEPGTMVPAAGCALGAWLGAIPLCLDWEQPW 292
            A ET VFS+L+ + T+LP        L A    F R    +V E G  V      +GAWLGA+P+ LDW++PW
Sbjct:  112 ARETFVFSILLTTFTALPCLCILGPNLSAWLRVFTRSGAVSVWEQGLCVGTMCTLMGAWLGALPIPLDWDRPW 184
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BLAST of mRNA_L-elsbetiae_contig20865.6309.1 vs. uniprot
Match: A0A388LWB6_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LWB6_CHABU)

HSP 1 Score: 50.4 bits (119), Expect = 2.710e-5
Identity = 27/71 (38.03%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:   83 ETAVFSLLMASLTSLPVSVSSRSPLEACAGFLRGTRP-AVHEPGTMVPAAGCALGAWLGAIPLCLDWEQPW 292
            +TA +S+ M++L  LP +    +  +        TRP    E    +PA G A+GAW+GA P+ LDW QPW
Sbjct:   91 KTATWSIFMSTLIVLPTACCKGASWDDWIRLFAQTRPLGAVEILLCIPAHGAAIGAWIGAWPMPLDWAQPW 161
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BLAST of mRNA_L-elsbetiae_contig20865.6309.1 vs. uniprot
Match: A0A5C5FZN8_9BASI (GPI biosynthesis protein family Pig-F-domain-containing protein (Fragment) n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5FZN8_9BASI)

HSP 1 Score: 50.4 bits (119), Expect = 4.120e-5
Identity = 31/81 (38.27%), Postives = 44/81 (54.32%), Query Frame = 2 
Query:   65 LVSRAPETAVFSLLMASLTSLPVSV----SSRSPLEACAGFLRGTRPAVH-EPGTMVPAAGCALGAWLGAIPLCLDWEQPW 292
            L S  P T + SLL++ L  LP+++    S  +   A         PA   E   ++PA G  LGAWLGA+P+ LDW++PW
Sbjct:  201 LTSNTPSTFLLSLLVSILAFLPLAIALPPSGTAERFAWLRLWSTLSPADDLELALVLPALGTLLGAWLGAVPIPLDWDRPW 281
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BLAST of mRNA_L-elsbetiae_contig20865.6309.1 vs. uniprot
Match: A0A238FKC7_9BASI (BQ2448_6682 protein n=1 Tax=Microbotryum intermedium TaxID=269621 RepID=A0A238FKC7_9BASI)

HSP 1 Score: 50.1 bits (118), Expect = 6.020e-5
Identity = 29/82 (35.37%), Postives = 44/82 (53.66%), Query Frame = 2 
Query:   65 LVSRAPETAVFSLLMASLTSLPVSVS-----SRSPLEACAGFLRGTRPAVH-EPGTMVPAAGCALGAWLGAIPLCLDWEQPW 292
            L+   PET + SLL++ L  LP++++      + P       L    P  H E   ++PA G   GAWLGA+P+ LDW++ W
Sbjct:  199 LIRSIPETFLLSLLVSILAFLPLAITFGQPHPKKPERFLWLRLFSLAPQTHLEVALLLPALGALAGAWLGAVPIPLDWDRAW 280
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20865.6309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FUR0_ECTSI1.870e-3382.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00142579EF3.950e-640.00phosphatidylinositol-glycan biosynthesis class F p... [more]
S4RV09_PETMA6.560e-641.10Phosphatidylinositol glycan anchor biosynthesis, c... [more]
UPI0014031A221.690e-541.10phosphatidylinositol-glycan biosynthesis class F p... [more]
A0A388LWB6_CHABU2.710e-538.03Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A5C5FZN8_9BASI4.120e-538.27GPI biosynthesis protein family Pig-F-domain-conta... [more]
A0A238FKC7_9BASI6.020e-535.37BQ2448_6682 protein n=1 Tax=Microbotryum intermedi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20865contigL-elsbetiae_contig20865:137..1845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size295
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815856.970882-CDS-L-elsbetiae_contig20865:136..3251622815856.970882-CDS-L-elsbetiae_contig20865:136..325Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20865 137..325 +
1691683149.5361981-CDS-L-elsbetiae_contig20865:136..3251691683149.5361981-CDS-L-elsbetiae_contig20865:136..325Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20865 137..325 +
1622815856.9836178-CDS-L-elsbetiae_contig20865:1740..18451622815856.9836178-CDS-L-elsbetiae_contig20865:1740..1845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20865 1741..1845 +
1691683149.5461335-CDS-L-elsbetiae_contig20865:1740..18451691683149.5461335-CDS-L-elsbetiae_contig20865:1740..1845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20865 1741..1845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20865.6309.1prot_L-elsbetiae_contig20865.6309.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20865 137..1845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20865.6309.1

>prot_L-elsbetiae_contig20865.6309.1 ID=prot_L-elsbetiae_contig20865.6309.1|Name=mRNA_L-elsbetiae_contig20865.6309.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
MPFFFPLICCRRLISSRSRCRSRQPCPRDGRVLAAHGLSHLPPRVGVEPE
PPRGLRWLPPRHEACGARARDDGSGGGVCARGMAGGHPALPGLGTALA
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mRNA from alignment at L-elsbetiae_contig20865:137..1845+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20865.6309.1 ID=mRNA_L-elsbetiae_contig20865.6309.1|Name=mRNA_L-elsbetiae_contig20865.6309.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1709bp|location=Sequence derived from alignment at L-elsbetiae_contig20865:137..1845+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGTTCTTCTTCCCCTTGATATGCTGTCGTCGCCTCATCTCGTCCCG
TTCTCGTTGTCGTTCTCGTCAGCCGTGCCCCCGAGACGGCCGTGTTCTCG
CTGCTCATGGCCTCTCTCACCTCCCTCCCCGTGTCGGTGTCGAGCCGGAG
CCCCCTCGAGGCCTGCGCTGGCTTCCTCCGCGGCACGAGGTGCGTTGTGC
GTCGGTCGTAGAAGTATGCATCGCTGTGGGTTACATATATGTAGAAGCCG
ATAAATGAAACCACTTGGAGACCAATCAGCGCCGACTGGTTCCATCAGCG
CTGACTGGTCTAGTGGTTTGATCTCGGCTTCTATAAAGCGTGCTGTGCGT
GCTATGCGTGCTGTGTGCGGGTGTGCGCCCCCCTGAGCAGCGCCGACTGG
ACCATCACGGCTGACTGGTCTAGTGGTTTGATCTCGGCTTCTATAGCGCG
CTGTGCGCGGGTGTGCGCCCTCCTAAACAGCGCCGATTGGACCATCAGCG
CTGACCGGTCTAATGGTTTGATCTCGGCTTCTATAAAGCGTGCTGTGCGT
GCTATGCGTGGGTGTGCGTCCCCTTGAAAGCTACAGGGGTGGATGGCAAC
ACTTGGGGGTTGATTTCCGAGCTTGTTCGTGGCTTCCAAAAGCCTTAGAC
GGACCCCGGTAGTACAAAGCTTAGGCTTTCGTTGGACAGCACGACGACCC
GCCGGACCAGGTAGGCATATCAGTCAGCGCTGGGTGGTGGTCCATACCCG
TCCGTGTTTCTCGATAAGTATTTAATGTGAAGACAACATACATACGAAGT
ACGTACATACATACATACATACATACATACATACATCATACACTCTGCGT
GGTGTCTCTGTATCACTGCACGTATTTATTGACATTTGTTTTTCTTCTTC
ACATTAATTTCCAGTGCTCGACGGGGGCTCCTTGCCACGAGGGCATCTTG
CCGCCAGAGTACCGAACAATGCGGTCACACAGGAAGGTTCCTCTCCCCGG
GGCCCCCACCCCCCACCCTCTGCGGTGCTTGCCTCAGCATTTTGTCGCGA
GAAAAAGGGGTTCAGCCGTATGTATGTGTGTGTGTGTGTGTGTGTCCTTC
CCATTTATATTGGCGACAGTCCCCCCAAGTGGAGACGTGTACTACACCTT
GCGGGGTACTCAGAGGTACTACACTTTGCAGTGCATTTGTCTGTACAACT
AGAACCAACCGGGGTCACACAGGAGGGGGGGAGCACTGGGGGCTTTTTCT
TCTTTTTTATTTTATTTTTTTGCCCCACCTTCCTCCTGCGGTTCTTGCCT
GGGCCGAATGAATTAATTCTGGCAGTTTTGGAGAGTCGACAGAGCGCACA
CCGTCTGCAAATGTAAAAAAAAAAAAACTCCCCGGGGGGAAACTCAGAGA
AAATCATGCTTCCTGGCCGAAAAGGTGGATAAGGGGGGGGAGGGGTTCTT
GGAGAGATTGCGGTATACATATATCCACGCCCCGCCTAAAGCCTAAATAT
AACATTAGGGACGTCTTTGCCTCGTTACGGCGGCCCTTCCTTTGCTTCCT
CCCTACCCCCCTCTCTCCCCCCTCCCCCCCCTCCCCTCTCGGGGGTTCCG
CCAGGCCTGCGGTGCACGAGCCCGGGACGATGGTTCCGGCGGCGGGGTGT
GCGCTCGGGGCATGGCTGGGGGCCATCCCGCTTTGCCTGGACTGGGAACA
GCCTTGGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20865:137..1845+

>mRNA_L-elsbetiae_contig20865.6309.1 ID=mRNA_L-elsbetiae_contig20865.6309.1|Name=mRNA_L-elsbetiae_contig20865.6309.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig20865:137..1845+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGTTCTTCTTCCCCTTGATATGCTGTCGTCGCCTCATCTCGTCCCG
TTCTCGTTGTCGTTCTCGTCAGCCGTGCCCCCGAGACGGCCGTGTTCTCG
CTGCTCATGGCCTCTCTCACCTCCCTCCCCGTGTCGGTGTCGAGCCGGAG
CCCCCTCGAGGCCTGCGCTGGCTTCCTCCGCGGCACGAGATGCCGTTCTT
CTTCCCCTTGATATGCTGTCGTCGCCTCATCTCGTCCCGTTCTCGTTGTC
GTTCTCGTCAGCCGTGCCCCCGAGACGGCCGTGTTCTCGCTGCTCATGGC
CTCTCTCACCTCCCTCCCCGTGTCGGTGTCGAGCCGGAGCCCCCTCGAGG
CCTGCGCTGGCTTCCTCCGCGGCACGAGGCCTGCGGTGCACGAGCCCGGG
ACGATGGTTCCGGCGGCGGGGTGTGCGCTCGGGGCATGGCTGGGGGCCAT
CCCGCTTTGCCTGGACTGGGAACAGCCTTGGCAGCCTGCGGTGCACGAGC
CCGGGACGATGGTTCCGGCGGCGGGGTGTGCGCTCGGGGCATGGCTGGGG
GCCATCCCGCTTTGCCTGGACTGGGAACAGCCTTGGCA
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