mRNA_L-elsbetiae_contig2086.6308.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2086.6308.1
Unique NamemRNA_L-elsbetiae_contig2086.6308.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2086.6308.1 vs. uniprot
Match: D8LDF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF5_ECTSI)

HSP 1 Score: 272 bits (696), Expect = 3.570e-89
Identity = 135/165 (81.82%), Postives = 146/165 (88.48%), Query Frame = 1 
Query:    1 LKGLWRTRETRSDGS------------GICGGRLSFKGFVGAGKGTVEYRGCGDREGKGRWLTKPKNVVNGRITLSARWSIKFADGTSLLYRGDVVQDAEARGAALRVDAGGAAALGGPALERPDAHIRGEVLRPVKNIQGTLTEKKIGEFEADLIELPSDEDKL 459
            ++GLWRTRETR+DGS            GICGGRLSFKGFVGAGKGTVEY+GCGDREGKGRWLTKPKN+VNGRITLSARWS+ F DGT+LLYRGDVVQDAEA+G AL VD  GAAA+GGPA ERPDAHIRGEVLRPVKNIQG+LTEKKIGEFEADLIELPSD+DKL
Sbjct:  186 VRGLWRTRETRNDGSALPQEAGRLGRKGICGGRLSFKGFVGAGKGTVEYKGCGDREGKGRWLTKPKNIVNGRITLSARWSVNFTDGTTLLYRGDVVQDAEAQGTALTVDTSGAAAMGGPAFERPDAHIRGEVLRPVKNIQGSLTEKKIGEFEADLIELPSDDDKL 350
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BLAST of mRNA_L-elsbetiae_contig2086.6308.1 vs. uniprot
Match: A0A835Z999_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z999_9STRA)

HSP 1 Score: 137 bits (344), Expect = 7.950e-38
Identity = 80/156 (51.28%), Postives = 99/156 (63.46%), Query Frame = 1 
Query:    1 LKGLWRTRETRSDGSGICGGRLSFKGFVGA-GKGTVEYRGC-GDREGKGRWLTKPKNVVNGRITLSARWSIKF-ADGTSLLYRGDVVQDAEARGAALRVDAGGAAALGGPALERPDAHIRGEVLRPVKNIQGTLTEKKIGEFEADLIELPSDEDKL 459
            ++G+WR RE R +G  +C G+L+FKGFV   GKGTVEY    G+REGKG WL KP ++  G+I  SARW + +   G S LYRGDVV D+               A G P    PDAHIRGEVL+P K   G+L EK IGEFEADL+++  DEDKL
Sbjct:   61 IRGVWRIREIR-EGESLCKGKLTFKGFVDEPGKGTVEYVSSDGEREGKGYWLLKPGSITAGKILFSARWKVTYKGGGGSFLYRGDVVLDSTET----------LHAAGNP---HPDAHIRGEVLKPFKGRTGSLQEKHIGEFEADLLQVDKDEDKL 202
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BLAST of mRNA_L-elsbetiae_contig2086.6308.1 vs. uniprot
Match: W7TK28_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TK28_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.660e-35
Identity = 67/154 (43.51%), Postives = 91/154 (59.09%), Query Frame = 1 
Query:    1 LKGLWRTRETRSDGSGICGGRLSFKGFVGA-GKGTVEYRGCGDREGKGRWLTKPKNVVNGRITLSARWSIKFADGTSLLYRGDVVQDAEARGAALRVDAGGAAALGGPALERPDAHIRGEVLRPVKNIQGTLTEKKIGEFEADLIELPSDEDKL 459
            ++G+WR RE R     +C GR+  +GFV    KGT+EY GC D +GKG WL KP  + NG+I  SARW ++F+DG SL+YRGDV+                    GG   +   +   GE+L+P   I G L+EKK+G FEADLI++  DE+KL
Sbjct:  131 IRGVWRIREYRDRDQPLCKGRIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSARWKVRFSDGESLIYRGDVL-------------------AGGNYAKASASITDGEILKPFTGITGNLSEKKVGTFEADLIQVSDDEEKL 265
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BLAST of mRNA_L-elsbetiae_contig2086.6308.1 vs. uniprot
Match: A0A7S2Y0F9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0F9_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.550e-31
Identity = 64/154 (41.56%), Postives = 91/154 (59.09%), Query Frame = 1 
Query:    1 LKGLWRTRETRSDGSGICGGRLSFKGFVGAGKGTVEYRGCGDREGKGRWLTKPKNVVNGRITLSARWSIKFADGTSLLYRGDVVQDAEARGAALRVDAGGAAALGGPALERPDAHIRGEVLRPVKNIQGTLTEKKIG-EFEADLIELPSDEDKL 459
            ++G+WR RE  S  + +C G+L F GFV    GTV+Y GC DR+G G+WL KP  +  G++  SARW +KF DGT+L+Y GD           LR          G   E+PD+ + GE+L PV N  G ++EK  G +F AD++E+ +D +KL
Sbjct:  133 IRGVWRIREYESKTAPLCKGQLKFDGFVDQMGGTVKYEGCNDRKGSGKWLLKPIRIQEGKVLYSARWKLKFTDGTTLIYVGD-----------LRTS--------GYVTEKPDSTMSGEILIPVTNKAGIMSEKSSGGKFTADILEISTDTEKL 267
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BLAST of mRNA_L-elsbetiae_contig2086.6308.1 vs. uniprot
Match: A0A6T5NYX6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NYX6_HETAK)

HSP 1 Score: 120 bits (302), Expect = 9.840e-31
Identity = 74/160 (46.25%), Postives = 95/160 (59.38%), Query Frame = 1 
Query:    1 LKGLWRTRETR-SDGSGICGGRLSFKGFVGAGKGTVEYR-----GCGDREGKGRWLTKPKNVVNGRITLSARWSIKFADGTSLLYRGDVVQDAEARGAALRVDAGGAAALGGPALERPDAHIRGEVLRPVKNIQGTLTEKKIG-EFEADLIELPSDEDKL 459
            ++G WR RE R +   G+C G + F+GF    KGT+EY      GC  R GKG WL KP  V NG+I LSARW IKF DGT+L+Y+GDV  D   R   LR              +RPDA I GE+L PVK   G+L+EK  G +F+AD +++ SD +KL
Sbjct:  134 IRGTWRLREFRPAREGGLCRGTVLFRGFEDEPKGTLEYAAAPGGGCEGRAGKGNWLVKPGRVSNGQIILSARWKIKFNDGTTLIYKGDV--DVTGR---LR--------------DRPDASIDGEILIPVKTQAGSLSEKNSGLKFQADYLKVGSDSEKL 274
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2086.6308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LDF5_ECTSI3.570e-8981.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z999_9STRA7.950e-3851.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TK28_9STRA2.660e-3543.51Uncharacterized protein n=4 Tax=Monodopsidaceae Ta... [more]
A0A7S2Y0F9_9STRA1.550e-3141.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6T5NYX6_HETAK9.840e-3146.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2086contigL-elsbetiae_contig2086:14867..15695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size462
Cds size462
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2086.6308.1prot_L-elsbetiae_contig2086.6308.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2086 14867..15695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815856.9113445-CDS-L-elsbetiae_contig2086:14866..151491622815856.9113445-CDS-L-elsbetiae_contig2086:14866..15149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2086 14867..15149 -
1691683149.5059881-CDS-L-elsbetiae_contig2086:14866..151491691683149.5059881-CDS-L-elsbetiae_contig2086:14866..15149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2086 14867..15149 -
1622815856.9234533-CDS-L-elsbetiae_contig2086:15480..156141622815856.9234533-CDS-L-elsbetiae_contig2086:15480..15614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2086 15481..15614 -
1691683149.517409-CDS-L-elsbetiae_contig2086:15480..156141691683149.517409-CDS-L-elsbetiae_contig2086:15480..15614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2086 15481..15614 -
1622815856.9359133-CDS-L-elsbetiae_contig2086:15650..156951622815856.9359133-CDS-L-elsbetiae_contig2086:15650..15695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2086 15651..15695 -
1691683149.5261405-CDS-L-elsbetiae_contig2086:15650..156951691683149.5261405-CDS-L-elsbetiae_contig2086:15650..15695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2086 15651..15695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2086.6308.1

>prot_L-elsbetiae_contig2086.6308.1 ID=prot_L-elsbetiae_contig2086.6308.1|Name=mRNA_L-elsbetiae_contig2086.6308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
LKGLWRTRETRSDGSGICGGRLSFKGFVGAGKGTVEYRGCGDREGKGRWL
TKPKNVVNGRITLSARWSIKFADGTSLLYRGDVVQDAEARGAALRVDAGG
AAALGGPALERPDAHIRGEVLRPVKNIQGTLTEKKIGEFEADLIELPSDE
DKL*
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mRNA from alignment at L-elsbetiae_contig2086:14867..15695-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2086.6308.1 ID=mRNA_L-elsbetiae_contig2086.6308.1|Name=mRNA_L-elsbetiae_contig2086.6308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=829bp|location=Sequence derived from alignment at L-elsbetiae_contig2086:14867..15695- (Laminarionema elsbetiae ELsaHSoW15)
TTGAAAGGTTTGTGGCGCACACGCGAGACACGGAGCGATGGCTCCGTGCT
GCCGCAGGAAGGGGGCAGGCTAGGCCAGAAGGGCATCTGCGGGGGCCGCC
TATCCTTCAAGGGCTTCGTGGGGGCCGGCAAGGGGACGGTGGAGTACAGA
GGGTGCGGAGATCGCGAAGGAAAGGGGAGGTGGCTGACCAAGCCCAAGAA
TGTCGTCAACGGGAGGTATGTAGGACGACGGTGGATGGCTCCTGCCCGCA
TTTGCCGGGGGGGTGGCGCGAAGCGCTTGCGTGCCTATGTCAAATGTGTT
GGCATATGTCCGACTGTTTGGAGTGCGAGAGTGTGGACTATGGTTATCGT
ACCCGCGGACTCTTGTCGGAGGCGCCTCTGGTAGACACAGGTTCCCCTTT
TTTAGCGAAATAGTTTATCACATGTGAATGGTACAACCAGGCCAGGGGCC
CACCATATCGATCATATACACGCACCTGCCCATAAGATACACATGCATAC
ATATCTCCCCCGCCCCACATCTCTATCACCCGTCCACCCCCGGCAGGATA
ACCCTCTCGGCGCGGTGGAGCATAAAGTTCGCGGACGGCACGTCCCTGCT
CTACCGCGGTGACGTCGTGCAAGACGCGGAGGCGAGGGGGGCGGCCCTCC
GGGTGGACGCCGGGGGCGCCGCGGCGCTGGGGGGGCCGGCGCTCGAGCGG
CCGGACGCGCACATCCGGGGGGAGGTGCTGCGCCCGGTGAAGAACATCCA
GGGAACGCTGACGGAGAAGAAGATAGGGGAGTTCGAGGCGGACCTGATTG
AGCTCCCCAGCGATGAGGACAAGTTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2086:14867..15695-

>mRNA_L-elsbetiae_contig2086.6308.1 ID=mRNA_L-elsbetiae_contig2086.6308.1|Name=mRNA_L-elsbetiae_contig2086.6308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig2086:14867..15695- (Laminarionema elsbetiae ELsaHSoW15)
TTGAAAGGTTTGTGGCGCACACGCGAGACACGGAGCGATGGCTCCTTGAA
AGGTTTGTGGCGCACACGCGAGACACGGAGCGATGGCTCCGGCATCTGCG
GGGGCCGCCTATCCTTCAAGGGCTTCGTGGGGGCCGGCAAGGGGACGGTG
GAGTACAGAGGGTGCGGAGATCGCGAAGGAAAGGGGAGGTGGCTGACCAA
GCCCAAGAATGTCGTCAACGGGAGGGCATCTGCGGGGGCCGCCTATCCTT
CAAGGGCTTCGTGGGGGCCGGCAAGGGGACGGTGGAGTACAGAGGGTGCG
GAGATCGCGAAGGAAAGGGGAGGTGGCTGACCAAGCCCAAGAATGTCGTC
AACGGGAGGATAACCCTCTCGGCGCGGTGGAGCATAAAGTTCGCGGACGG
CACGTCCCTGCTCTACCGCGGTGACGTCGTGCAAGACGCGGAGGCGAGGG
GGGCGGCCCTCCGGGTGGACGCCGGGGGCGCCGCGGCGCTGGGGGGGCCG
GCGCTCGAGCGGCCGGACGCGCACATCCGGGGGGAGGTGCTGCGCCCGGT
GAAGAACATCCAGGGAACGCTGACGGAGAAGAAGATAGGGGAGTTCGAGG
CGGACCTGATTGAGCTCCCCAGCGATGAGGACAAGTTGTGAGATAACCCT
CTCGGCGCGGTGGAGCATAAAGTTCGCGGACGGCACGTCCCTGCTCTACC
GCGGTGACGTCGTGCAAGACGCGGAGGCGAGGGGGGCGGCCCTCCGGGTG
GACGCCGGGGGCGCCGCGGCGCTGGGGGGGCCGGCGCTCGAGCGGCCGGA
CGCGCACATCCGGGGGGAGGTGCTGCGCCCGGTGAAGAACATCCAGGGAA
CGCTGACGGAGAAGAAGATAGGGGAGTTCGAGGCGGACCTGATTGAGCTC
CCCAGCGATGAGGACAAGTTGTGA
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