mRNA_L-elsbetiae_contig20806.6292.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20806.6292.1
Unique NamemRNA_L-elsbetiae_contig20806.6292.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20806.6292.1 vs. uniprot
Match: D7FK42_ECTSI (DNA-directed DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK42_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 3.520e-33
Identity = 71/80 (88.75%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:    1 LHASTSAEVLAGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAEGATPASQMAEVGAVRIHAAWNQTSARTGR 240
            +HASTSAEVL GLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAE A PASQ A  GA RIHA WNQTSARTGR
Sbjct:  825 VHASTSAEVLEGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAESAVPASQGA--GAARIHATWNQTSARTGR 902
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BLAST of mRNA_L-elsbetiae_contig20806.6292.1 vs. uniprot
Match: A0A6H5J5W8_9PHAE (POLAc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5W8_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 8.880e-33
Identity = 70/80 (87.50%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:    1 LHASTSAEVLAGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAEGATPASQMAEVGAVRIHAAWNQTSARTGR 240
            +HASTSAEVL GLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAA+ A PASQ A  GA RIHA WNQTSARTGR
Sbjct:  831 VHASTSAEVLEGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAADSAVPASQGA--GATRIHATWNQTSARTGR 908
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BLAST of mRNA_L-elsbetiae_contig20806.6292.1 vs. uniprot
Match: A0A2E0I3U8_9FLAO (DNA polymerase I (Fragment) n=3 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2E0I3U8_9FLAO)

HSP 1 Score: 50.1 bits (118), Expect = 3.550e-5
Identity = 31/77 (40.26%), Postives = 41/77 (53.25%), Query Frame = 1 
Query:   10 STSAEVLAGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAEGATPASQMAEVGAVRIHAAWNQTSARTGR 240
            STS + L  L+GKHA++  ILEFR + K K+TYVD L E                +A+  + RIH  + Q  A TGR
Sbjct:  442 STSEDTLQKLKGKHAIIDDILEFRQLQKLKSTYVDTLPE----------------LADSDSHRIHTTYQQAVAATGR 502
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BLAST of mRNA_L-elsbetiae_contig20806.6292.1 vs. uniprot
Match: A0A3C0IYC9_9FIRM (DNA polymerase I n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A3C0IYC9_9FIRM)

HSP 1 Score: 50.1 bits (118), Expect = 3.580e-5
Identity = 32/77 (41.56%), Postives = 39/77 (50.65%), Query Frame = 1 
Query:   10 STSAEVLAGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAEGATPASQMAEVGAVRIHAAWNQTSARTGR 240
            ST AEVL  L   H VVA +LE+RG++K K+TYVD L E                +      RIH  +NQT   TGR
Sbjct:  626 STDAEVLEALAELHPVVAKVLEYRGISKLKSTYVDALPE----------------LINPRTGRIHTTFNQTVTATGR 686
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BLAST of mRNA_L-elsbetiae_contig20806.6292.1 vs. uniprot
Match: A0A180FI68_9BACT (DNA polymerase I n=4 Tax=unclassified Bacteroidales TaxID=185291 RepID=A0A180FI68_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 4.890e-5
Identity = 31/77 (40.26%), Postives = 41/77 (53.25%), Query Frame = 1 
Query:   10 STSAEVLAGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAEGATPASQMAEVGAVRIHAAWNQTSARTGR 240
            STS +VL  LQGKH VV  +LE+RG+ K  +TY+D L              PA   +  G  +IH ++NQ    TGR
Sbjct:  608 STSGDVLEKLQGKHPVVGKLLEYRGIKKLLSTYIDAL--------------PALVHSNTG--KIHTSFNQAVTATGR 668
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BLAST of mRNA_L-elsbetiae_contig20806.6292.1 vs. uniprot
Match: F3PP92_9BACE (DNA polymerase I n=1 Tax=Bacteroides fluxus YIT 12057 TaxID=763034 RepID=F3PP92_9BACE)

HSP 1 Score: 49.7 bits (117), Expect = 4.900e-5
Identity = 30/76 (39.47%), Postives = 39/76 (51.32%), Query Frame = 1 
Query:   13 TSAEVLAGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAEGATPASQMAEVGAVRIHAAWNQTSARTGR 240
            TS EVL  L+GKHAV+  ILE+RG+ K  +TY+D L                 Q+      RIH ++NQ    TGR
Sbjct:  634 TSEEVLESLRGKHAVIGKILEYRGLKKLLSTYIDAL----------------PQLINSRTGRIHTSFNQAVTSTGR 693
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BLAST of mRNA_L-elsbetiae_contig20806.6292.1 vs. uniprot
Match: A0A2E5MFW6_9FLAO (DNA polymerase I n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2E5MFW6_9FLAO)

HSP 1 Score: 49.3 bits (116), Expect = 6.690e-5
Identity = 31/77 (40.26%), Postives = 39/77 (50.65%), Query Frame = 1 
Query:   10 STSAEVLAGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAEGATPASQMAEVGAVRIHAAWNQTSARTGR 240
            STS + L  L+GKH ++  ILEFR + K K+TYVD L E                MA+    RIH  + Q  A TGR
Sbjct:  613 STSEDTLLRLKGKHTIIDDILEFRQLQKLKSTYVDALPE----------------MADAYTHRIHTTYQQAVAATGR 673
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BLAST of mRNA_L-elsbetiae_contig20806.6292.1 vs. uniprot
Match: A0A7W5H3N8_9PORP (DNA polymerase I n=1 Tax=Microbacter margulisiae TaxID=1350067 RepID=A0A7W5H3N8_9PORP)

HSP 1 Score: 49.3 bits (116), Expect = 6.690e-5
Identity = 32/77 (41.56%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:   10 STSAEVLAGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAEGATPASQMAEVGAVRIHAAWNQTSARTGR 240
            ST+ +VL  L+GKH VV  ILE+RG+ K  +TY+D L              PA    + G  +IH ++NQT A TGR
Sbjct:  620 STNEDVLESLRGKHPVVDKILEYRGLKKLLSTYIDAL--------------PALINQKTG--KIHTSFNQTVAATGR 680
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20806.6292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FK42_ECTSI3.520e-3388.75DNA-directed DNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5J5W8_9PHAE8.880e-3387.50POLAc domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A2E0I3U8_9FLAO3.550e-540.26DNA polymerase I (Fragment) n=3 Tax=Flavobacterial... [more]
A0A3C0IYC9_9FIRM3.580e-541.56DNA polymerase I n=1 Tax=Firmicutes bacterium TaxI... [more]
A0A180FI68_9BACT4.890e-540.26DNA polymerase I n=4 Tax=unclassified Bacteroidale... [more]
F3PP92_9BACE4.900e-539.47DNA polymerase I n=1 Tax=Bacteroides fluxus YIT 12... [more]
A0A2E5MFW6_9FLAO6.690e-540.26DNA polymerase I n=1 Tax=Flavobacteriales bacteriu... [more]
A0A7W5H3N8_9PORP6.690e-541.56DNA polymerase I n=1 Tax=Microbacter margulisiae T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20806contigL-elsbetiae_contig20806:44..904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue3.3e-28
Seed eggNOG ortholog2880.D7FK42
Preferred namePOL1A
KEGG rclassRC02795
KEGG koko:K02335,ko:K02349
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
Hectar predicted targeting categoryother localisation
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons2
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815855.12988-CDS-L-elsbetiae_contig20806:43..1791622815855.12988-CDS-L-elsbetiae_contig20806:43..179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20806 44..179 -
1691683148.2670114-CDS-L-elsbetiae_contig20806:43..1791691683148.2670114-CDS-L-elsbetiae_contig20806:43..179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20806 44..179 -
1622815855.1399205-CDS-L-elsbetiae_contig20806:800..9041622815855.1399205-CDS-L-elsbetiae_contig20806:800..904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20806 801..904 -
1691683148.2779837-CDS-L-elsbetiae_contig20806:800..9041691683148.2779837-CDS-L-elsbetiae_contig20806:800..904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20806 801..904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20806.6292.1prot_L-elsbetiae_contig20806.6292.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20806 44..904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20806.6292.1

>prot_L-elsbetiae_contig20806.6292.1 ID=prot_L-elsbetiae_contig20806.6292.1|Name=mRNA_L-elsbetiae_contig20806.6292.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
LHASTSAEVLAGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAA
EGATPASQMAEVGAVRIHAAWNQTSARTGR
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mRNA from alignment at L-elsbetiae_contig20806:44..904-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20806.6292.1 ID=mRNA_L-elsbetiae_contig20806.6292.1|Name=mRNA_L-elsbetiae_contig20806.6292.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=861bp|location=Sequence derived from alignment at L-elsbetiae_contig20806:44..904- (Laminarionema elsbetiae ELsaHSoW15)
TTGCACGCTTCCACTTCTGCCGAGGTGTTGGCAGGGTTGCAGGGAAAGCA
TGCCGTGGTCGCCCCTATCCTCGAGTTTCGCGGCGTGAACAAGTACAAGA
CCACGTGAGCGATCGGTGGTATGATGTGCGCCAACACAAACATGTTACAC
CGCACCCGTTGTCCGCCTTGCTAGCGGTGTCTGTGGGATCTTTTTGCCGT
ATCCTGGTTTCATCGCTACTTTACCTGCCCAAGACTCGCGCGTCGTGCGT
ACGTGCGAAATTTTTGGTTGCGTGCGTACTTAGAATGCAGCCGACATTGG
CTTGTTTTCACCATGCGGTGTTTCCATGGCTGCGCCTACCGGCGAGATTG
GGGTGAACAATAACAAAACGCGTGAGCGCGTACTGATACGTCCACGACAG
CATCAAACCGGTGTTGGAATCTTTAAAAAGCGTTTCGGTAGGTTGTAGTA
TCGTCAGGCGTGCTGCTGTTGGTACTGCTGTTGCTGCCGTTGCTGCTGCT
GCTGTTTCCGCCCTTCTTTGCGTTTCACGGGGTTAGGGAGTGCAGACTGC
TGCCGCGAAAACAGTTTAGGATTAAAAGTGTAGAAGTAAGTACCTCGCTG
ATTTTGGTGTTTTCACAAACCATGGCCTTTGGCCAACAATCCTCCGTCCC
TCGCCTTAGTTTGGATTTACTGCTCGCCTTAGCTTGTGTGTTGTTTGCTT
GGACACATTATTGTGCCACTGAAAGGTACGTGGACAAACTGGCCGAAAGA
GCGCTTGGTGCTGCGGCAGCCGAGGGTGCCACCCCGGCAAGCCAGATGGC
CGAAGTAGGAGCCGTGAGGATCCACGCAGCATGGAACCAAACCTCCGCTA
GAACTGGCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20806:44..904-

>mRNA_L-elsbetiae_contig20806.6292.1 ID=mRNA_L-elsbetiae_contig20806.6292.1|Name=mRNA_L-elsbetiae_contig20806.6292.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig20806:44..904- (Laminarionema elsbetiae ELsaHSoW15)
TTGCACGCTTCCACTTCTGCCGAGGTGTTGGCAGGGTTGCAGGGAAAGCA
TGCCGTGGTCGCCCCTATCCTCGAGTTTCGCGGCGTGAACAAGTACAAGA
CCACTTGCACGCTTCCACTTCTGCCGAGGTGTTGGCAGGGTTGCAGGGAA
AGCATGCCGTGGTCGCCCCTATCCTCGAGTTTCGCGGCGTGAACAAGTAC
AAGACCACGTACGTGGACAAACTGGCCGAAAGAGCGCTTGGTGCTGCGGC
AGCCGAGGGTGCCACCCCGGCAAGCCAGATGGCCGAAGTAGGAGCCGTGA
GGATCCACGCAGCATGGAACCAAACCTCCGCTAGAACTGGCCGCGTACGT
GGACAAACTGGCCGAAAGAGCGCTTGGTGCTGCGGCAGCCGAGGGTGCCA
CCCCGGCAAGCCAGATGGCCGAAGTAGGAGCCGTGAGGATCCACGCAGCA
TGGAACCAAACCTCCGCTAGAACTGGCCGC
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