mRNA_L-elsbetiae_contig2080.6288.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2080.6288.1
Unique NamemRNA_L-elsbetiae_contig2080.6288.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig2080.6288.1 vs. uniprot
Match: D7G6I1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6I1_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 2.990e-44
Identity = 91/130 (70.00%), Postives = 105/130 (80.77%), Query Frame = 3 
Query:   18 PAPIKLPGFTYVTVFFEALGLASTAGMAAKPFLTLSVLSAKGQLVEAAQGMNSPALTTPNGLLWWGRTWHMQTPLETLGSGSTMVFELRDLESGNQKVICWGALPLDPDELNTQPEKLSTYLAPTDPFRL 407
            PAP KL GFTY++VF E L +AS A +  KP LT+SV SAKG+LVE+AQ  +SP L +    LWWGRTWHMQTPLETLG GS+MVFELRD++ G++K ICWGALPLDPD LNTQPEKLSTYLAP DP RL
Sbjct: 1767 PAPAKLLGFTYISVFLETLVVASAADIG-KPTLTVSVFSAKGKLVESAQEFDSPTLFSSM-YLWWGRTWHMQTPLETLGPGSSMVFELRDIQGGSKKAICWGALPLDPDHLNTQPEKLSTYLAPVDPARL 1894
[Close]
BLAST of mRNA_L-elsbetiae_contig2080.6288.1 vs. uniprot
Match: A0A836CBL8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.850e-18
Identity = 54/131 (41.22%), Postives = 76/131 (58.02%), Query Frame = 3 
Query:    9 PLLPAPIKLPGFTYVTVFFEALGLASTAGMAAKPFLTLSVLSAKGQLVEAAQGMNSPALTTPNGLLWWGRTWHMQTPLETLGSGSTMVFELRDLES--GNQKVICWGALPLDPDELNTQPEKLSTYLAPTD 395
            PLLP P +L G TY+T   E L + ST  ++A PFLT+SV  A G+ +E  Q +N+P ++ P   LWWG  WHMQ P+E LG G  +VFEL+D  +  G  K + W A  ++ +   +    L  Y +P D
Sbjct: 1412 PLLPPPSRLKGLTYLTFHVEKLNMQSTERLSA-PFLTVSVHDAAGKRLEKPQDVNAPVVSRPT-YLWWGANWHMQNPMENLGQGCMVVFELKDQSTVTGEVKNLGWAAYHINTNSATSHEVSLEMYASPVD 1540
[Close]
BLAST of mRNA_L-elsbetiae_contig2080.6288.1 vs. uniprot
Match: A0A6H5L704_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L704_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.980e-18
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 3 
Query:  111 FLTLSVLSAKGQLVEAAQGMNSPALTTPNGLLWWGRTWHMQTPLETLGSGSTMVFELRDLESGNQKVICWGALPLDPDELNTQPEKLSTY 380
            F+ +SV +AKG+L EA Q +  P +T P   LWW  TWHMQTPLETLG+GS + FEL++     ++ + WGA  L+PDE+N++PE L  Y
Sbjct:  511 FVRVSVYNAKGKLSEAQQDVTVPIMTNPE-YLWWAHTWHMQTPLETLGAGSFVAFELKEKGEHKERTLSWGAYHLNPDEVNSRPESLCAY 599
[Close]
BLAST of mRNA_L-elsbetiae_contig2080.6288.1 vs. uniprot
Match: A0A7S2BSA7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BSA7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.540e-10
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 3 
Query:   45 TYVTVFFEALGLASTAGMAAKPFLTLSVLSAKGQLVEAA---QGMNSPALTTPNGLLWWGRTWHMQTPLETLGSGSTMVFELRDLESG 299
            TYV++FF+ L + ST  + + PFLTL V   K +   +A   Q +  PA+T  +  LWWG T+HMQTPLE L +G+ ++ EL+D++ G
Sbjct:    9 TYVSMFFDKLNMQSTDSLIS-PFLTLKVYLVKDKKFTSAEEPQDIVEPAVTRGD-YLWWGSTYHMQTPLENLTTGAVILVELKDVDDG 94
[Close]
BLAST of mRNA_L-elsbetiae_contig2080.6288.1 vs. uniprot
Match: D7G6I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6I0_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 2.930e-9
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 3 
Query:  111 FLTLSVLSAKGQLVEAAQGMNSPALTTPNGLLWWGRTWHMQTPLETLGSGSTMVFELRD 287
            F+ +SV +AKG+L EA Q +  P +T P   LWW  TWHMQTPLETLG+GS + FEL++
Sbjct: 1782 FVRVSVYNAKGKLSEAQQDVTVPIMTNPE-YLWWAHTWHMQTPLETLGAGSFVAFELKE 1839
[Close]
BLAST of mRNA_L-elsbetiae_contig2080.6288.1 vs. uniprot
Match: A0A067D5X8_SAPPC (C2 Aida-type domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D5X8_SAPPC)

HSP 1 Score: 67.8 bits (164), Expect = 4.430e-9
Identity = 42/134 (31.34%), Postives = 64/134 (47.76%), Query Frame = 3 
Query:   24 PIKLPGFTYVTVFFEALGLASTAGMAAKPFLTLSVLSAKGQLVEAAQGMNSPALTTPNGL------LWWGRTWHMQTPLETLGSGSTMVFELR--DLESGNQKVICWGALPLDPDELNTQPEKLSTYLAPTDPF 401
            P+K+   TYV+V   A+ +A   G+   P   +  +  +  +V+  Q       TTP+ L      LW+G+TWH+Q PLE +  G   VFEL   D  +   +V CW    LD  ++ + P     Y  P DP+
Sbjct:   82 PLKVRDDTYVSVLLSAVAIAG--GVMQTPHFRIYSMDPRRAVVDTPQ-------TTPDALIQDGPSLWFGKTWHLQVPLEHMTEGCVAVFELLRYDYHTDGPEVFCWTFFRLDLSKITSAPLTFEMYSPPVDPY 206
[Close]
BLAST of mRNA_L-elsbetiae_contig2080.6288.1 vs. uniprot
Match: A0A6U0ZTV9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0ZTV9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.370e-8
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 3 
Query:    9 PLLPAPIKLPGFTYVTVFFEALGLASTAGMAAKPFLTLSVLSA---KGQLVEAAQGMNSPALTTPNGLLWWGRTWHMQTPLETLGSGSTMVFELRD 287
            PLL  P K+   +YV++  E   + ST  +A +PF+ L+V      K  + E  Q +  P +T P+  LWWG T+HMQ+PLE L SG+ ++ ELRD
Sbjct:  925 PLLAPPDKIANCSYVSLLVEKSSMQSTEKLA-RPFVRLTVYKVSEHKHHVAETPQTLVEPCVTRPD-YLWWGNTFHMQSPLENLSSGAVVLLELRD 1018
[Close]
BLAST of mRNA_L-elsbetiae_contig2080.6288.1 vs. uniprot
Match: A0A484E7A1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7A1_BRELC)

HSP 1 Score: 68.6 bits (166), Expect = 3.450e-8
Identity = 47/158 (29.75%), Postives = 69/158 (43.67%), Query Frame = 3 
Query:   12 LLPAPIKLPGFTYVTVFFEALGLASTAGMAAKPFLTLSVLSAKGQLVEAAQGMNSPALTTPNGLLWWGRTWHMQTPLETLGSGSTMVF--------------------------ELR--DLESGNQKVICWGALPLDPDELNTQPEKLSTYLAPTDPF 401
            LLP P +L   TYV+VF  A+ +A T  +   P   L ++  +G +++ AQ   +  + T     W+G TW++QTPLE L  G T++F                          ELR   L +   +V CW    LD  ++ T P     Y  P DP 
Sbjct: 1710 LLPPPERLHDSTYVSVFLGAIAVA-TGPIMETPHYKLYIMDCRGAVIDTAQRTPTSLIQTGGNYWWFGNTWYLQTPLEHLKDGKTLLFLCYGLLLVDVLMTNRQMYIPGCVAVVELRHRSLVTLEVEVGCWTFFHLDLSKITTAPATFEMYAPPVDPL 1866
[Close]
BLAST of mRNA_L-elsbetiae_contig2080.6288.1 vs. uniprot
Match: A0A485LQX5_9STRA (Aste57867_22874 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQX5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.190e-6
Identity = 44/139 (31.65%), Postives = 68/139 (48.92%), Query Frame = 3 
Query:   27 IKLPGF----TYVTVFFEALGLASTAGMAAKPFLTLSVLSAKGQLVEAAQGMNSPALTTPNGLLWWGRTWHMQTPLETLGSGSTMVFELRDLESGNQKV------------ICWGALPLDPDELNTQPEKLSTYLAPTD 395
            +K PG     +YV+++ E +GL + A   ++P L LSV   +  LVE  Q + S  L   + L +WG TWHMQTP+E L SG+ +V E+   +S +  +            ICW  + +D    +T       +  P D
Sbjct: 1548 LKQPGLVRNSSYVSIYIEQVGLPN-APQFSRPRLVLSVYDTQKNLVEKKQQVTSLPLVQSSSL-YWGCTWHMQTPMENLPSGALVVIEVVSQQSSSAALMPSSPRYGATDPICWTYIQIDKRTTDTATLNAEMFKYPID 1684
[Close]
BLAST of mRNA_L-elsbetiae_contig2080.6288.1 vs. uniprot
Match: A0A024UE78_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UE78_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.540e-6
Identity = 43/139 (30.94%), Postives = 64/139 (46.04%), Query Frame = 3 
Query:   12 LLPAPIKLPGFTYVTVFFEALGLASTAGMAAKPFLTLSVLSAKGQLVEAAQGMNSPALTTPNGLLWWGRTWHMQTPLETLGSGSTMVFEL-----------RDLESGNQKVICWGALPLDPDELNTQPEKLSTYLAPTD 395
            LL  P  L   +YV+++ + +GL   A    +P L +SV   +  LVE  Q + S  L   N + +WG TWHMQTP+E L +G+ +V E+              + G    +CW  L +D     T       Y+ P D
Sbjct: 1543 LLKQPGHLRNSSYVSLYVDQVGLVHAAEYT-RPRLVISVFDTEKNLVEKKQQVTSLPLAQSNAM-FWGCTWHMQTPMENLPAGALVVIEIVSSAHHGHLMPSSPQYGAVHPVCWTFLHIDKRTATTSAFTSEMYVYPMD 1679
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2080.6288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G6I1_ECTSI2.990e-4470.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBL8_9STRA3.850e-1841.22P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6H5L704_9PHAE4.980e-1850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2BSA7_9STRA1.540e-1043.18Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
D7G6I0_ECTSI2.930e-955.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A067D5X8_SAPPC4.430e-931.34C2 Aida-type domain-containing protein n=1 Tax=Sap... [more]
A0A6U0ZTV9_9STRA2.370e-840.63Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A484E7A1_BRELC3.450e-829.75Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A485LQX5_9STRA1.190e-631.65Aste57867_22874 protein n=1 Tax=Aphanomyces stella... [more]
A0A024UE78_9STRA3.540e-630.94Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2080contigL-elsbetiae_contig2080:1390..4538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue3.1e-36
Seed eggNOG ortholog2880.D7G6I1
Preferred namemyoG
KEGG koko:K10352,ko:K10357,ko:K10359,ko:K10361
KEGG Pathwayko04530,map04530
Hectar predicted targeting categorysignal peptide
GOsGO:0006935,GO:0006996,GO:0007010,GO:0007015,GO:0007163,GO:0008104,GO:0008150,GO:0008154,GO:0009605,GO:0009987,GO:0016043,GO:0022607,GO:0030010,GO:0030029,GO:0030036,GO:0030041,GO:0030587,GO:0032502,GO:0033036,GO:0034613,GO:0034622,GO:0040011,GO:0042221,GO:0042330,GO:0043327,GO:0043933,GO:0044085,GO:0048856,GO:0050896,GO:0051179,GO:0051258,GO:0051641,GO:0051703,GO:0051704,GO:0065003,GO:0070727,GO:0071840,GO:0072657,GO:0090702,GO:0097435,GO:0099120
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759,KOG4229@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03029,ko03036,ko04131,ko04147,ko04812
Exons3
Model size1887
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2080.6288.1prot_L-elsbetiae_contig2080.6288.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2080 1485..3241 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815855.054582-UTR-L-elsbetiae_contig2080:1389..14841622815855.054582-UTR-L-elsbetiae_contig2080:1389..1484Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2080 1390..1484 +
1691683148.2053053-UTR-L-elsbetiae_contig2080:1389..14841691683148.2053053-UTR-L-elsbetiae_contig2080:1389..1484Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2080 1390..1484 +
1622815855.0972283-UTR-L-elsbetiae_contig2080:3241..45381622815855.0972283-UTR-L-elsbetiae_contig2080:3241..4538Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2080 3242..4538 +
1691683148.252122-UTR-L-elsbetiae_contig2080:3241..45381691683148.252122-UTR-L-elsbetiae_contig2080:3241..4538Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2080 3242..4538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815855.0663102-CDS-L-elsbetiae_contig2080:1484..15531622815855.0663102-CDS-L-elsbetiae_contig2080:1484..1553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2080 1485..1553 +
1691683148.2196379-CDS-L-elsbetiae_contig2080:1484..15531691683148.2196379-CDS-L-elsbetiae_contig2080:1484..1553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2080 1485..1553 +
1622815855.076292-CDS-L-elsbetiae_contig2080:2320..24491622815855.076292-CDS-L-elsbetiae_contig2080:2320..2449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2080 2321..2449 +
1691683148.2316065-CDS-L-elsbetiae_contig2080:2320..24491691683148.2316065-CDS-L-elsbetiae_contig2080:2320..2449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2080 2321..2449 +
1622815855.0873258-CDS-L-elsbetiae_contig2080:2944..32411622815855.0873258-CDS-L-elsbetiae_contig2080:2944..3241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2080 2945..3241 +
1691683148.2419748-CDS-L-elsbetiae_contig2080:2944..32411691683148.2419748-CDS-L-elsbetiae_contig2080:2944..3241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2080 2945..3241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2080.6288.1

>prot_L-elsbetiae_contig2080.6288.1 ID=prot_L-elsbetiae_contig2080.6288.1|Name=mRNA_L-elsbetiae_contig2080.6288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
MAAKPFLTLSVLSAKGQLVEAAQGMNSPALTTPNGLLWWGRTWHMQTPLE
TLGSGSTMVFELRDLESGNQKVICWGALPLDPDELNTQPEKLSTYLAPTD
PFRLTPGFDADPPSPGCYGGGGGGGGGGSGNGGKGRKGSSSSSLLLPLRA
GAELGAEVCLTRCW*
back to top

mRNA from alignment at L-elsbetiae_contig2080:1390..4538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2080.6288.1 ID=mRNA_L-elsbetiae_contig2080.6288.1|Name=mRNA_L-elsbetiae_contig2080.6288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3149bp|location=Sequence derived from alignment at L-elsbetiae_contig2080:1390..4538+ (Laminarionema elsbetiae ELsaHSoW15)
TGCCTCCACCGCTCCTCCCGGCCCCGATCAAGCTCCCGGGGTTCACCTAC
GTCACGGTTTTCTTCGAGGCGCTCGGCTTGGCTTCCACGGCGGGGATGGC
CGCCAAGCCTTTCCTCACTCTTTCGGTATTAAGCGCCAAGGGACAGCTCG
TCGAGGCCGCCCAGGTAGGAAGGCATCATGATCGCCGGGGAGGGGGTCGG
AGATCCCCGCACATCGCTGTGCCCCCGTGTGTGTGTGTGTGTGTGATGCC
CACCGGGCTCTCCTTGGGTTTGGCTCTCTCAGGTCGGACCATTGCGCGTG
CATGCATTCATTCTTGACGAGGGTGGGGAGTGCTGAACCCTGCTGGCGAT
AAGAGCACAGCAGGCAGGCACCGCAGGAGGGGCTCTACCCCCCCCCGGTT
GGGTCGTCGAGATAGTCGTAGTGGAGGAAAGGAGCCAGTGGGGCAGGCGA
CGACTAAGCCAAGAATAGGAAGGGAAAAACAAAACAAAGAGCATCGAAAC
GCTTGGTTGTGAAGAACCTGTGTTCTGTGCTTTTGTCCGCCGCCGCCGCC
GCCACTACCGCCGCCGCCGTCCTCGTCGCCGCAGTAGCCTTCGCAAGTTT
TACTGGAAGATAAATCATATGGGATCAATAAAGTATGGAAACGGCTGATG
GGGGAGTCGTTTGGGGTTAAGGCTAGGGTTAGCGTTAGGGTAAGGGTTAC
GGAACCCCTGTGTATTCTTCGGGAAGGCGGTCCTCGTCGTCGGCGGCGAA
TACCCCCCCAAACGTTCCGCCGACGACCCAAAAGCTTCCTCGTTCTCGCC
GATGCCACAGCGAAACCGTCCATCTACATAAACATATATACAATACATAT
ATGCATACCCCACACCTGTAGATACAGCTCTCACCTCCCCCCCCCTCCCC
CCCGATTCGTGCGTTTTTCCGGGCCACACAGGGCATGAACTCCCCGGCGC
TCACGACCCCCAACGGCCTGCTTTGGTGGGGCCGCACGTGGCACATGCAA
ACGCCGCTAGAAACCCTGGGATCGGGCAGCACCATGGTGTTCGAGCTGCG
TGACCTTGAGGTAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGAGGGGGGGGAGTGGGGGGGGGGCCTCCATACAAAAAAAAAAA
AAAAAAAANNNNNNNNNNGGGGCACAGGCAAAGCCCGCAAAAACCCCTGG
GAGCGGGCAGCCCCATGGTGTTCGAGCTGGGTGACCTTGGGGGGGGGGGG
GGGGGGGGGCGGGGGCTCCGAAAAATATCTTCCGTGACATTGAAGTAGGG
AAGGGGGGGCTCCGTAAAATTTCTTCCGTGAGAAGTCCAGACTTCTATAT
ACCCAGCTTAGAAAGGGGAAGGCATTTTTTATGCCTTCCTTTGAGTTCCC
AGACTATGCACAAATATATAGGACGTACGAACCACCCAGAGAACGCATGC
TTAACTCTCTACTCCTCTATATCGCCTCTTCTACGTCGAATTCTCACACC
CCCTCCCCCCGTGCGCTAACAAAACAACGAACAACCTCTCCTACCCTTCG
CACAGAGCGGGAACCAGAAGGTCATCTGCTGGGGAGCCCTGCCCCTCGAC
CCGGACGAACTGAACACTCAGCCGGAGAAGCTGAGCACCTACCTGGCCCC
CACGGATCCTTTCCGGCTGACGCCAGGCTTCGACGCCGACCCCCCCTCGC
CGGGTTGCTACGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCAGCGGCAAT
GGCGGCAAGGGCCGCAAGGGCAGCTCGTCGTCATCCCTGCTGCTGCCGTT
GCGGGCGGGGGCTGAGCTCGGGGCAGAAGTGTGCCTGACTCGTTGCTGGT
GACGGTGCACACCACCTGAGGAGGGATGGCGGGGGCGTGTGCGAAAACGA
GAGCGAGCCTGGAGCTCTTTCTTCGAGGCAGATACAGCACGGCAGTCAGT
GTAAACTATTGTACGCCTATCTATACAGCGACCCATTTCATGCGCTCGTT
TCAACAGAAGTTCGTTCCACATATGCCCCATCAGAGTGCCGCCTGTGCCG
TGCTGGCGGGGGGGGTGGTGGTGACAGCAAGAAGGGTGACAAGTGCGATG
GAATAATGATGGCGATGGTCTACAGACATACGTACAACGTTACCACGCTT
CATATTGAAGGCGCTTGAGGGGGAGCGCGCTGGGGGCGCGGCCGGGTTCA
CTGTCTTCCCAGGCAGTTCAAATTGAAATGCGGCTCATTGGTTGCTTGCT
TCGCCCAAAACCAAACGATCGGGGAACACCGATGACATCTCACTGGGCCT
CTCTCTCAGCGCTCCCCTTTATTGGTGGGGGGGGGCGCTATATGTACCGC
GAAACGCCAGGGGTAGGCATGCCCTAGTTATAGCGACAACACGCAGGCAG
GCAGAAGAAGCGTTTTTGTTTTTTGTAGCGGCTATTGTCCGGCGAGACGG
AGTTGCACCCACCTGCCCTACACGTATCGCGCTGATAGGTATAAAAAACG
ACATGCCATTGTTTTCGTTCTCGATTTTGGGCGATGATGATGATGTAAAA
GTGCCTCTCGGATGTAGAGCGCTATTGGGATGTGTGCCGGGAAACGCGGG
GAGAGAAAGAGAAACACAAGCTGTCCGAGACGGCTGGGTGGGTGGCCGTT
CCATCTCTGGGGCCGATCTAACTTTCTTGTCCGACAGCCCCTGCATTGCT
CGGACACCCGCACGGCGTGGAGCATCGCATAAACGGAAGTGGGGGGGGCA
CTGTCTCGTATCCCACGCTAGAAATGTTGTCCTGGGCGTCTTCAGGACGA
TTCCAGCGTGTGGGTGTAGATACGTCGGCGCCCAACGTTAGGGCAGGTGC
AAAACAATGCCTGCGTCTCATCACGTCTTGGTATGCGACGTTTTCTCAAT
AGGTTGGTATGCTATTTAGTTTTCGTGCATGCAGTAGATATGTTCATACC
GAGGGCCGTCGAAAGCAAGAATCGGCCCAGCAGTCTTTCTTTATGTTTGA
AGAAGACTGCTGTCGTAAGAGCGGTAGGGGCGGGATATTTTGTTCAGAAG
GAACAAGCATTCCGTGTTTGTACAGGCACTGCATTTATTTCCACCGCTGT
TCGTGGCACGGGTCCGGCCTTGTTTCCAGTTTACAACCTGATCGAAAAT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2080:1390..4538+

>mRNA_L-elsbetiae_contig2080.6288.1 ID=mRNA_L-elsbetiae_contig2080.6288.1|Name=mRNA_L-elsbetiae_contig2080.6288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig2080:1390..4538+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGCCAAGCCTTTCCTCACTCTTTCGGTATTAAGCGCCAAGGGACA
GCTCGTCGAGGCCGCCCAGATGGCCGCCAAGCCTTTCCTCACTCTTTCGG
TATTAAGCGCCAAGGGACAGCTCGTCGAGGCCGCCCAGGGCATGAACTCC
CCGGCGCTCACGACCCCCAACGGCCTGCTTTGGTGGGGCCGCACGTGGCA
CATGCAAACGCCGCTAGAAACCCTGGGATCGGGCAGCACCATGGTGTTCG
AGCTGCGTGACCTTGAGGGCATGAACTCCCCGGCGCTCACGACCCCCAAC
GGCCTGCTTTGGTGGGGCCGCACGTGGCACATGCAAACGCCGCTAGAAAC
CCTGGGATCGGGCAGCACCATGGTGTTCGAGCTGCGTGACCTTGAGAGCG
GGAACCAGAAGGTCATCTGCTGGGGAGCCCTGCCCCTCGACCCGGACGAA
CTGAACACTCAGCCGGAGAAGCTGAGCACCTACCTGGCCCCCACGGATCC
TTTCCGGCTGACGCCAGGCTTCGACGCCGACCCCCCCTCGCCGGGTTGCT
ACGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCAGCGGCAATGGCGGCAAG
GGCCGCAAGGGCAGCTCGTCGTCATCCCTGCTGCTGCCGTTGCGGGCGGG
GGCTGAGCTCGGGGCAGAAGTGTGCCTGACTCGTTGCTGGTGAAGCGGGA
ACCAGAAGGTCATCTGCTGGGGAGCCCTGCCCCTCGACCCGGACGAACTG
AACACTCAGCCGGAGAAGCTGAGCACCTACCTGGCCCCCACGGATCCTTT
CCGGCTGACGCCAGGCTTCGACGCCGACCCCCCCTCGCCGGGTTGCTACG
GCGGCGGCGGCGGCGGCGGTGGCGGCGGCAGCGGCAATGGCGGCAAGGGC
CGCAAGGGCAGCTCGTCGTCATCCCTGCTGCTGCCGTTGCGGGCGGGGGC
TGAGCTCGGGGCAGAAGTGTGCCTGACTCGTTGCTGGTGA
back to top