prot_L-elsbetiae_contig2080.6291.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig2080.6291.1
Unique Name	prot_L-elsbetiae_contig2080.6291.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	466

Homology

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BLAST of mRNA_L-elsbetiae_contig2080.6291.1 vs. uniprot
Match: A0A6H5L6Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z7_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.190e-37
Identity = 90/113 (79.65%), Postives = 96/113 (84.96%), Query Frame = 0

Query:    1 GRERARLACLLLANGALLYGHVLVLFALLSRLSATMFAISSGYVRAALVFVLLLSLKGSAAGARSVGMALATLAVSAHFYRGYVRGRAASPLAGFGGSTGGLLCDGDDGGESG 113
            GRERARLACLLLANG  LYGH+LVLFALLSRLSATMFAISSGYV AALVFVLLL+L+GSAAG R VGM+LATLAVSAHFYR YVRGRA S L     +  GL CD DDGGE+G
Sbjct:  579 GRERARLACLLLANGVFLYGHLLVLFALLSRLSATMFAISSGYVHAALVFVLLLALRGSAAGPRMVGMSLATLAVSAHFYRAYVRGRATSSLLNSADNADGLPCDADDGGEAG 691

[Close]

BLAST of mRNA_L-elsbetiae_contig2080.6291.1 vs. uniprot
Match: D7G6G9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G9_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 2.210e-27
Identity = 77/113 (68.14%), Postives = 82/113 (72.57%), Query Frame = 0

Query:    1 GRERARLACLLLANGALLYGHVLVLFALLSRLSATMFAISSGYVRAALVFVLLLSLKGSAAGARSVGMALATLAVSAHFYRGYVRGRAASPLAGFGGSTGGLLCDGDDGGESG 113
            GRERARLACLLLANG  LYGH+LVLFALLSRLSATMFAIS                +GSAAG R VGM+LATLAVSAHFYR YVRGRA S L   G +  GL CD DDGGE+G
Sbjct:  609 GRERARLACLLLANGVFLYGHLLVLFALLSRLSATMFAIS----------------RGSAAGPRIVGMSLATLAVSAHFYRAYVRGRATSSLLNSGDNAEGLPCDADDGGEAG 705

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig2080.6291.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig2080.6291.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L6Z7_9PHAE	1.190e-37	79.65	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G6G9_ECTSI	2.210e-27	68.14	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..6
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 55..60
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 81..466
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 35..54
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 61..80
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 30..34
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 7..29
None	No IPR available	TMHMM	TMhelix		coord: 61..80
None	No IPR available	TMHMM	TMhelix		coord: 34..56
None	No IPR available	TMHMM	TMhelix		coord: 7..29

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig2080	contig	L-elsbetiae_contig2080:15822..19415 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig2080.6291.1	mRNA_L-elsbetiae_contig2080.6291.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig2080 15821..19415 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig2080.6291.1 ID=prot_L-elsbetiae_contig2080.6291.1|Name=mRNA_L-elsbetiae_contig2080.6291.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=466bp
GRERARLACLLLANGALLYGHVLVLFALLSRLSATMFAISSGYVRAALVF
VLLLSLKGSAAGARSVGMALATLAVSAHFYRGYVRGRAASPLAGFGGSTG
GLLCDGDDGGESGAGAGSGGGGDDDGDGEEGTISFLQTRAPSYRRRLPRF
LRREADEGAAAAPPAPGPASSSSLSSPRGRRAAVGGGAAATAAGGSAGGG
EGGPGLFVPLLGTKLDPRMMQQGLVERAHGEGVGREVERAAPGSGGGGGG
ETAVELSPSRFAWRWMGLRPAETGGAATGNPRHYPLPRPGRPGSSYPAAP
SGGSTAAGDGSPAGTGLNLRPHPAAAARGARMPSSSVAAGNASSPHAAAA
TATAITGTRAGSKSVAVRRIGGGGGGHAAVVVAGERKGASGGHLGGGAAR
GAAAAGGGGDGKARGYYGARAAAAAGEEAGGGRGRLDETAVAAAVVTGTR
AAPLSSPSSSSSFSLN