mRNA_L-elsbetiae_contig2080.6291.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2080.6291.1
Unique NamemRNA_L-elsbetiae_contig2080.6291.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2080.6291.1 vs. uniprot
Match: A0A6H5L6Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z7_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.190e-37
Identity = 90/113 (79.65%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:    1 GRERARLACLLLANGALLYGHVLVLFALLSRLSATMFAISSGYVRAALVFVLLLSLKGSAAGARSVGMALATLAVSAHFYRGYVRGRAASPLAGFGGSTGGLLCDGDDGGESG 339
            GRERARLACLLLANG  LYGH+LVLFALLSRLSATMFAISSGYV AALVFVLLL+L+GSAAG R VGM+LATLAVSAHFYR YVRGRA S L     +  GL CD DDGGE+G
Sbjct:  579 GRERARLACLLLANGVFLYGHLLVLFALLSRLSATMFAISSGYVHAALVFVLLLALRGSAAGPRMVGMSLATLAVSAHFYRAYVRGRATSSLLNSADNADGLPCDADDGGEAG 691
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BLAST of mRNA_L-elsbetiae_contig2080.6291.1 vs. uniprot
Match: D7G6G9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G9_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 2.210e-27
Identity = 77/113 (68.14%), Postives = 82/113 (72.57%), Query Frame = 1 
Query:    1 GRERARLACLLLANGALLYGHVLVLFALLSRLSATMFAISSGYVRAALVFVLLLSLKGSAAGARSVGMALATLAVSAHFYRGYVRGRAASPLAGFGGSTGGLLCDGDDGGESG 339
            GRERARLACLLLANG  LYGH+LVLFALLSRLSATMFAIS                +GSAAG R VGM+LATLAVSAHFYR YVRGRA S L   G +  GL CD DDGGE+G
Sbjct:  609 GRERARLACLLLANGVFLYGHLLVLFALLSRLSATMFAIS----------------RGSAAGPRIVGMSLATLAVSAHFYRAYVRGRATSSLLNSGDNAEGLPCDADDGGEAG 705
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2080.6291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6Z7_9PHAE1.190e-3779.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6G9_ECTSI2.210e-2768.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2080contigL-elsbetiae_contig2080:15821..19415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size1399
Cds size1398
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2080.6291.1prot_L-elsbetiae_contig2080.6291.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2080 15822..19415 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815854.8751242-CDS-L-elsbetiae_contig2080:15821..169591622815854.8751242-CDS-L-elsbetiae_contig2080:15821..16959Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2080 15822..16959 -
1691683148.114973-CDS-L-elsbetiae_contig2080:15821..169591691683148.114973-CDS-L-elsbetiae_contig2080:15821..16959Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2080 15822..16959 -
1622815854.8869693-CDS-L-elsbetiae_contig2080:18238..183761622815854.8869693-CDS-L-elsbetiae_contig2080:18238..18376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2080 18239..18376 -
1691683148.1284964-CDS-L-elsbetiae_contig2080:18238..183761691683148.1284964-CDS-L-elsbetiae_contig2080:18238..18376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2080 18239..18376 -
1622815854.896885-CDS-L-elsbetiae_contig2080:19293..194151622815854.896885-CDS-L-elsbetiae_contig2080:19293..19415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2080 19294..19415 -
1691683148.1369941-CDS-L-elsbetiae_contig2080:19293..194151691683148.1369941-CDS-L-elsbetiae_contig2080:19293..19415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2080 19294..19415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2080.6291.1

>prot_L-elsbetiae_contig2080.6291.1 ID=prot_L-elsbetiae_contig2080.6291.1|Name=mRNA_L-elsbetiae_contig2080.6291.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=466bp
GRERARLACLLLANGALLYGHVLVLFALLSRLSATMFAISSGYVRAALVF
VLLLSLKGSAAGARSVGMALATLAVSAHFYRGYVRGRAASPLAGFGGSTG
GLLCDGDDGGESGAGAGSGGGGDDDGDGEEGTISFLQTRAPSYRRRLPRF
LRREADEGAAAAPPAPGPASSSSLSSPRGRRAAVGGGAAATAAGGSAGGG
EGGPGLFVPLLGTKLDPRMMQQGLVERAHGEGVGREVERAAPGSGGGGGG
ETAVELSPSRFAWRWMGLRPAETGGAATGNPRHYPLPRPGRPGSSYPAAP
SGGSTAAGDGSPAGTGLNLRPHPAAAARGARMPSSSVAAGNASSPHAAAA
TATAITGTRAGSKSVAVRRIGGGGGGHAAVVVAGERKGASGGHLGGGAAR
GAAAAGGGGDGKARGYYGARAAAAAGEEAGGGRGRLDETAVAAAVVTGTR
AAPLSSPSSSSSFSLN
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mRNA from alignment at L-elsbetiae_contig2080:15821..19415-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2080.6291.1 ID=mRNA_L-elsbetiae_contig2080.6291.1|Name=mRNA_L-elsbetiae_contig2080.6291.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3595bp|location=Sequence derived from alignment at L-elsbetiae_contig2080:15821..19415- (Laminarionema elsbetiae ELsaHSoW15)
GGCAGGGAGCGGGCGAGGCTGGCGTGCCTGCTGCTGGCGAACGGGGCGCT
GCTCTACGGGCACGTGCTGGTGCTGTTCGCGCTGCTGTCGAGGCTCTCGG
CCACGATGTTCGCCATCTCGAGGTGAGGGTTTTTTTTCGGTGCGTACATG
TATGTATGTTAAAGTCTCGTTTTCTGGATAATGAATACCTTGTGCTTTTT
AATTAAATGTGCCTAAATATACAAATAATTCATGTACACATTTCATTAAT
ATGAATGTATACACTACACATTTTAATTAATGTATCCATGCAAATTTAAT
TAATGTATCCAAATGTCAGCAGTCTACGTACGTCAAAGGCAGTCTGCCAA
AAATAGAACGAGGCGTTCCAGAGGCCAGAGGGACTGTTGTAGGCATACAT
TCTAACCCCCCTTTTTCTCCCGGTCCAAGAAACACTCGCACAAAATCCGT
AATCCATAGAATAGATATCTAGACGTGTAGTACAGCTATTATAAGTGTTT
TCTGTATAGGTGTCGTCGTCGTTTTTTTCGTTGTCACTGTCGTCGTCGTT
GTTTTCTCGTTGGCGCTGCGTACAATATTTTGCAACTTTTCAAATATGTA
CCACCCAATTAATCGCCATGTTTGGAAAAAAAAAAAAAAATGTTACACAG
CTATGTATGTATGCAGGTACGTACATAGGAGTGTCCCTTTTGTTTTGTCG
ACCTTTTGCTGCACTTGGGCGCGAAGGACACAACTCTCGCTTCAGATCCG
TGTTGGAATGTTTCTGAAGCCTCGCTGTGTACATCTGTCTGCCGTGGTTT
CGGCGGCCGCTTTTCTCGCTCGAAGATATGGACAACTTCTCCGAACGTAA
ACCACCCACCCACCCAACCATCCACGGGGCTCCATGCCCTTCTGCCGCCG
TTCCTTTTTTTGCCAGCAGCGGCTTTCTCGCTAGAGGATGTTCAATCTCT
CCGAATGTAAACCGTAAACCACCCACCCACGCACCCATCCACGGGGCTCC
ATGCCCTTCTCTGCCGCCGTTATTTTTTTTTTCCCGCAGCGGGTACGTGC
GCGCCGCCCTGGTGTTCGTGCTGCTGCTGTCCCTCAAAGGATCGGCCGCG
GGCGCTCGGAGCGTGGGCATGGCGCTCGCCACGCTTGCCGTGTCGGCGCA
CTTCTACCGCGGCTACGTCAGGGGCCGGTGCGTGTCTGCTGGGTAAATAG
AGAGAGATCGATCGAACGGCTTTTAATGTGAAGACCACAACACCAAAGCA
GCAATCAATCTATTGTGGTGTGTGGGGGGCGAGCCGATGTCCGGGCGAAG
TCTCGGTCAAAACTGGAAGAAACGTTCGACGATTCTCATTGAAATATATG
GAGAAGGTCAGACAAAGTGGTGTAAGAAAGTTTTTCTTGATATGTAGATA
AGTGCTTGTTTATTCAGCCAAGCCTTCAAAAAAAGAAAATAATATACCGT
TTGAACCCCATATCGAGTCTTTGCTCTAGTATGGGTTAGGTTCCATCTTT
GATTCTTTGTTTTATTTAAAAAAAAAAAAAAAAAAGAAGAAAAATCCCTA
GTGTTGTTCACCCCCCTCCTGTGTGGCCCCGGTTGGTTCTAGGTGTACAG
ACACATGCACTGCAAAGTGTAGTACCTCTTAAGTACACCGCAAGGTGTAG
TACACGTCTCCGCTTGGGGGGACTGTCGCCAAAATTAATGGGAAGGACAC
ACACACTTCCAGGAAGCAACTTTTGTTTTTCTTCCTGTGTATGTATGTAC
CGCAAGCATTCCAAGGTTCGCACCCCCTTGTTAGCATTTTTCTAAAGCGT
ATTTCTCCACAACCAGGAGGGTGCGAACACTAACTGATACCTCTCCGGAA
AGCCCCCTACGAGACGTTTCGAAAGCCACCCTTTTCGGCAGTGATACCCT
CCTGGTTGTGGAGAAATACGCTTTAGAAAAACGCTAACACGGGCGTGCGA
ACCTTTGGATGATTATGGTACGTTCCGATAATGGTGTATATCTGTGTAGC
GTAAACACACATTCAGTCGCGGCCGTCGCAGATGGCGACCGGCGCCTTTC
TCCGTACGTCATTTTTTTTCAATTGTTTTTTTTCTTCCCTTGAAATACTG
CCTCATTCGTCATCTACCCCACTGGCCCGCTTCCTCCACTACGACTGGCT
AGACGACCCAACCGGGGTCACATCGAAGGGGGGGGGGGGCGGAGCTCCTG
CGGTGCCTGCCTGTGATGTTTTTATCTCGAGCGGGGTTCAGCACTCACTC
CCTGCCCTCGTCAACAACGAAGTCGAAGTCCTACTAACTAACGTACACTA
GTTTGTCTGTTGCCAAATGAGTGTGGGAGGCGGTGCTGGTGTAGCTCACT
GATGGCGCCGTTGCTGCTGTGTTTCGTGCCGCCTACGACGACGGGCCCCT
AAACATTATGCCCCGGCGCCCGGAACGCGTGACACCTCTCGCGTCGAAAC
GCGCAGGGCCGCTTCCCCCCTCGCGGGCTTCGGGGGCAGCACGGGCGGCC
TCCTTTGCGACGGCGACGACGGAGGCGAGAGCGGCGCTGGTGCCGGAAGC
GGCGGCGGCGGCGACGACGACGGCGATGGCGAGGAGGGGACGATCTCCTT
TCTCCAAACCCGCGCCCCCTCCTACCGCCGCAGGCTGCCGCGGTTCCTCC
GGCGTGAGGCAGACGAGGGCGCGGCCGCGGCCCCGCCGGCCCCGGGCCCG
GCGTCGTCGTCGTCGCTGTCTTCGCCCCGTGGCAGAAGAGCAGCAGTAGG
GGGAGGAGCGGCGGCGACGGCGGCGGGGGGCTCCGCAGGAGGAGGGGAAG
GAGGGCCGGGGCTCTTCGTCCCTCTGCTCGGAACGAAGCTCGATCCCCGC
ATGATGCAGCAGGGTTTGGTAGAGAGGGCACACGGCGAAGGCGTGGGCCG
CGAGGTCGAGCGCGCCGCTCCTGGAAGCGGCGGCGGCGGCGGCGGCGAGA
CGGCGGTGGAGCTTTCGCCCTCCCGGTTCGCGTGGAGGTGGATGGGCTTG
CGGCCGGCGGAGACGGGAGGAGCCGCGACGGGCAACCCCAGGCACTACCC
TCTGCCTCGGCCCGGGCGCCCCGGCTCGTCGTACCCCGCCGCTCCGAGCG
GGGGGAGCACGGCCGCCGGTGACGGCTCCCCCGCTGGCACCGGCCTCAAT
CTCCGGCCGCACCCGGCGGCGGCGGCACGGGGCGCGCGAATGCCGTCGTC
GTCGGTGGCGGCGGGGAATGCCTCGTCGCCCCACGCCGCCGCCGCGACTG
CGACCGCGATCACGGGCACCAGGGCCGGTAGCAAGTCCGTCGCGGTCCGC
AGAATCGGCGGCGGCGGCGGCGGGCACGCCGCCGTCGTTGTTGCCGGAGA
GCGTAAAGGCGCATCGGGGGGGCACCTGGGTGGTGGTGCCGCAAGAGGTG
CCGCCGCCGCGGGAGGAGGGGGAGACGGGAAGGCTCGAGGGTACTACGGG
GCGAGGGCGGCGGCGGCGGCGGGAGAAGAAGCGGGCGGTGGTCGTGGCAG
GCTCGACGAGACCGCGGTGGCGGCGGCGGTGGTTACGGGTACGAGGGCCG
CTCCGCTATCGTCGCCGTCGTCGTCTTCCTCCTTCTCTCTGAACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2080:15821..19415-

>mRNA_L-elsbetiae_contig2080.6291.1 ID=mRNA_L-elsbetiae_contig2080.6291.1|Name=mRNA_L-elsbetiae_contig2080.6291.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2796bp|location=Sequence derived from alignment at L-elsbetiae_contig2080:15821..19415- (Laminarionema elsbetiae ELsaHSoW15)
GGCAGGGAGCGGGCGAGGCTGGCGTGCCTGCTGCTGGCGAACGGGGCGCT
GCTCTACGGGCACGTGCTGGTGCTGTTCGCGCTGCTGTCGAGGCTCTCGG
CCACGATGTTCGCCATCTCGAGGGCAGGGAGCGGGCGAGGCTGGCGTGCC
TGCTGCTGGCGAACGGGGCGCTGCTCTACGGGCACGTGCTGGTGCTGTTC
GCGCTGCTGTCGAGGCTCTCGGCCACGATGTTCGCCATCTCGAGCGGGTA
CGTGCGCGCCGCCCTGGTGTTCGTGCTGCTGCTGTCCCTCAAAGGATCGG
CCGCGGGCGCTCGGAGCGTGGGCATGGCGCTCGCCACGCTTGCCGTGTCG
GCGCACTTCTACCGCGGCTACGTCAGGGGCCGCGGGTACGTGCGCGCCGC
CCTGGTGTTCGTGCTGCTGCTGTCCCTCAAAGGATCGGCCGCGGGCGCTC
GGAGCGTGGGCATGGCGCTCGCCACGCTTGCCGTGTCGGCGCACTTCTAC
CGCGGCTACGTCAGGGGCCGGGCCGCTTCCCCCCTCGCGGGCTTCGGGGG
CAGCACGGGCGGCCTCCTTTGCGACGGCGACGACGGAGGCGAGAGCGGCG
CTGGTGCCGGAAGCGGCGGCGGCGGCGACGACGACGGCGATGGCGAGGAG
GGGACGATCTCCTTTCTCCAAACCCGCGCCCCCTCCTACCGCCGCAGGCT
GCCGCGGTTCCTCCGGCGTGAGGCAGACGAGGGCGCGGCCGCGGCCCCGC
CGGCCCCGGGCCCGGCGTCGTCGTCGTCGCTGTCTTCGCCCCGTGGCAGA
AGAGCAGCAGTAGGGGGAGGAGCGGCGGCGACGGCGGCGGGGGGCTCCGC
AGGAGGAGGGGAAGGAGGGCCGGGGCTCTTCGTCCCTCTGCTCGGAACGA
AGCTCGATCCCCGCATGATGCAGCAGGGTTTGGTAGAGAGGGCACACGGC
GAAGGCGTGGGCCGCGAGGTCGAGCGCGCCGCTCCTGGAAGCGGCGGCGG
CGGCGGCGGCGAGACGGCGGTGGAGCTTTCGCCCTCCCGGTTCGCGTGGA
GGTGGATGGGCTTGCGGCCGGCGGAGACGGGAGGAGCCGCGACGGGCAAC
CCCAGGCACTACCCTCTGCCTCGGCCCGGGCGCCCCGGCTCGTCGTACCC
CGCCGCTCCGAGCGGGGGGAGCACGGCCGCCGGTGACGGCTCCCCCGCTG
GCACCGGCCTCAATCTCCGGCCGCACCCGGCGGCGGCGGCACGGGGCGCG
CGAATGCCGTCGTCGTCGGTGGCGGCGGGGAATGCCTCGTCGCCCCACGC
CGCCGCCGCGACTGCGACCGCGATCACGGGCACCAGGGCCGGTAGCAAGT
CCGTCGCGGTCCGCAGAATCGGCGGCGGCGGCGGCGGGCACGCCGCCGTC
GTTGTTGCCGGAGAGCGTAAAGGCGCATCGGGGGGGCACCTGGGTGGTGG
TGCCGCAAGAGGTGCCGCCGCCGCGGGAGGAGGGGGAGACGGGAAGGCTC
GAGGGTACTACGGGGCGAGGGCGGCGGCGGCGGCGGGAGAAGAAGCGGGC
GGTGGTCGTGGCAGGCTCGACGAGACCGCGGTGGCGGCGGCGGTGGTTAC
GGGTACGAGGGCCGCTCCGCTATCGTCGCCGTCGTCGTCTTCCTCCTTCT
CTCTGAACGGCCGCTTCCCCCCTCGCGGGCTTCGGGGGCAGCACGGGCGG
CCTCCTTTGCGACGGCGACGACGGAGGCGAGAGCGGCGCTGGTGCCGGAA
GCGGCGGCGGCGGCGACGACGACGGCGATGGCGAGGAGGGGACGATCTCC
TTTCTCCAAACCCGCGCCCCCTCCTACCGCCGCAGGCTGCCGCGGTTCCT
CCGGCGTGAGGCAGACGAGGGCGCGGCCGCGGCCCCGCCGGCCCCGGGCC
CGGCGTCGTCGTCGTCGCTGTCTTCGCCCCGTGGCAGAAGAGCAGCAGTA
GGGGGAGGAGCGGCGGCGACGGCGGCGGGGGGCTCCGCAGGAGGAGGGGA
AGGAGGGCCGGGGCTCTTCGTCCCTCTGCTCGGAACGAAGCTCGATCCCC
GCATGATGCAGCAGGGTTTGGTAGAGAGGGCACACGGCGAAGGCGTGGGC
CGCGAGGTCGAGCGCGCCGCTCCTGGAAGCGGCGGCGGCGGCGGCGGCGA
GACGGCGGTGGAGCTTTCGCCCTCCCGGTTCGCGTGGAGGTGGATGGGCT
TGCGGCCGGCGGAGACGGGAGGAGCCGCGACGGGCAACCCCAGGCACTAC
CCTCTGCCTCGGCCCGGGCGCCCCGGCTCGTCGTACCCCGCCGCTCCGAG
CGGGGGGAGCACGGCCGCCGGTGACGGCTCCCCCGCTGGCACCGGCCTCA
ATCTCCGGCCGCACCCGGCGGCGGCGGCACGGGGCGCGCGAATGCCGTCG
TCGTCGGTGGCGGCGGGGAATGCCTCGTCGCCCCACGCCGCCGCCGCGAC
TGCGACCGCGATCACGGGCACCAGGGCCGGTAGCAAGTCCGTCGCGGTCC
GCAGAATCGGCGGCGGCGGCGGCGGGCACGCCGCCGTCGTTGTTGCCGGA
GAGCGTAAAGGCGCATCGGGGGGGCACCTGGGTGGTGGTGCCGCAAGAGG
TGCCGCCGCCGCGGGAGGAGGGGGAGACGGGAAGGCTCGAGGGTACTACG
GGGCGAGGGCGGCGGCGGCGGCGGGAGAAGAAGCGGGCGGTGGTCGTGGC
AGGCTCGACGAGACCGCGGTGGCGGCGGCGGTGGTTACGGGTACGAGGGC
CGCTCCGCTATCGTCGCCGTCGTCGTCTTCCTCCTTCTCTCTGAAC
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