mRNA_L-elsbetiae_contig208.6281.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig208.6281.1
Unique NamemRNA_L-elsbetiae_contig208.6281.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig208.6281.1 vs. uniprot
Match: A0A6H5JK33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK33_9PHAE)

HSP 1 Score: 278 bits (710), Expect = 6.220e-92
Identity = 140/179 (78.21%), Postives = 160/179 (89.39%), Query Frame = 2 
Query:    2 ERILQRVDSFSILIVVSTLITGFSIPSIQEARLDVTRLMMTLVFALEMFATIFFSIISFYAKQAFNYGSTNNQRTARFLYHVRWITFSAQACYTIGFLLFLTGILLEATAGYDEYWALVGVVPILVLGVVCWVISAYALISLRMGMWTHNLLLFDAETKLIDGKRSAYIPAPTTFRGWL 538
            ERILQRVDSFSILIVVSTL+TGFSIPSI++A+L +TR +MTLVFALEMFATIFFSIISFYAKQAFNYGSTNN RTARF+YHVRWITFS+QACYTIG LLF+ GILLEAT GYD YWAL GV P+++L VVCW  +A ALISLRMG+W ++LLLFDAE+KL+D KRS +IPAP +FR W 
Sbjct:   28 ERILQRVDSFSILIVVSTLVTGFSIPSIEQAQLGITRSIMTLVFALEMFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQACYTIGILLFVVGILLEATIGYDTYWALAGVGPVVILSVVCWFSAANALISLRMGLWMNSLLLFDAESKLVDQKRSTFIPAPASFREWF 206
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BLAST of mRNA_L-elsbetiae_contig208.6281.1 vs. uniprot
Match: D7FS41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS41_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 1.550e-63
Identity = 107/128 (83.59%), Postives = 120/128 (93.75%), Query Frame = 2 
Query:    2 ERILQRVDSFSILIVVSTLITGFSIPSIQEARLDVTRLMMTLVFALEMFATIFFSIISFYAKQAFNYGSTNNQRTARFLYHVRWITFSAQACYTIGFLLFLTGILLEATAGYDEYWALVGVVPILVLG 385
            +RILQRVDSFSILIVVSTLITGFSIP+I++A+LDVTR +MT+VFALEMFATIFFSIISFYAKQAFNYGSTNN RTARF+YHVRWITFS+QACYTIG LLF+ GILLEAT GYD YWAL GV P+++LG
Sbjct:  133 DRILQRVDSFSILIVVSTLITGFSIPTIEQAQLDVTRSIMTMVFALEMFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQACYTIGILLFVVGILLEATIGYDTYWALAGVGPVVILG 260
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig208.6281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK33_9PHAE6.220e-9278.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS41_ECTSI1.550e-6383.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig208contigL-elsbetiae_contig208:9901..12611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size688
Cds size483
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815854.4407723-UTR-L-elsbetiae_contig208:9900..99631622815854.4407723-UTR-L-elsbetiae_contig208:9900..9963Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig208 9901..9963 -
1691683147.7843065-UTR-L-elsbetiae_contig208:9900..99631691683147.7843065-UTR-L-elsbetiae_contig208:9900..9963Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig208 9901..9963 -
1622815854.4503603-UTR-L-elsbetiae_contig208:10494..105211622815854.4503603-UTR-L-elsbetiae_contig208:10494..10521Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig208 10495..10521 -
1691683147.7977712-UTR-L-elsbetiae_contig208:10494..105211691683147.7977712-UTR-L-elsbetiae_contig208:10494..10521Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig208 10495..10521 -
1622815854.5139241-UTR-L-elsbetiae_contig208:12496..126111622815854.5139241-UTR-L-elsbetiae_contig208:12496..12611Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig208 12497..12611 -
1691683147.845929-UTR-L-elsbetiae_contig208:12496..126111691683147.845929-UTR-L-elsbetiae_contig208:12496..12611Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig208 12497..12611 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815854.4637861-CDS-L-elsbetiae_contig208:10521..107361622815854.4637861-CDS-L-elsbetiae_contig208:10521..10736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 10522..10736 -
1691683147.809365-CDS-L-elsbetiae_contig208:10521..107361691683147.809365-CDS-L-elsbetiae_contig208:10521..10736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 10522..10736 -
1622815854.4762206-CDS-L-elsbetiae_contig208:11188..113001622815854.4762206-CDS-L-elsbetiae_contig208:11188..11300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 11189..11300 -
1691683147.8183916-CDS-L-elsbetiae_contig208:11188..113001691683147.8183916-CDS-L-elsbetiae_contig208:11188..11300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 11189..11300 -
1622815854.4864838-CDS-L-elsbetiae_contig208:11782..119111622815854.4864838-CDS-L-elsbetiae_contig208:11782..11911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 11783..11911 -
1691683147.8272982-CDS-L-elsbetiae_contig208:11782..119111691683147.8272982-CDS-L-elsbetiae_contig208:11782..11911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 11783..11911 -
1622815854.4991112-CDS-L-elsbetiae_contig208:12469..124961622815854.4991112-CDS-L-elsbetiae_contig208:12469..12496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 12470..12496 -
1691683147.8365562-CDS-L-elsbetiae_contig208:12469..124961691683147.8365562-CDS-L-elsbetiae_contig208:12469..12496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 12470..12496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig208.6281.1prot_L-elsbetiae_contig208.6281.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig208 10522..12496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig208.6281.1

>prot_L-elsbetiae_contig208.6281.1 ID=prot_L-elsbetiae_contig208.6281.1|Name=mRNA_L-elsbetiae_contig208.6281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
MMTLVFALEMFATIFFSIISFYAKQAFNYGSTNNQRTARFLYHVRWITFS
AQACYTIGFLLFLTGILLEATAGYDEYWALVGVVPILVLGVVCWVISAYA
LISLRMGMWTHNLLLFDAETKLIDGKRSAYIPAPTTFRGWLDRDKGDDGG
GDSDSNDNPC*
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mRNA from alignment at L-elsbetiae_contig208:9901..12611-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig208.6281.1 ID=mRNA_L-elsbetiae_contig208.6281.1|Name=mRNA_L-elsbetiae_contig208.6281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2711bp|location=Sequence derived from alignment at L-elsbetiae_contig208:9901..12611- (Laminarionema elsbetiae ELsaHSoW15)
CGAGCGGATTCTTCAGCGCGTGGACTCGTTCAGCATACTGATCGTCGTCT
CCACACTGATTACAGGGTTTTCGATTCCCAGCATCCAGGAAGCGCGACTT
GATGTCACGCGACTGATGATGACTCTGGTTTTCGCTCTCGAGGTGAGGCA
CTACCGGCGGCTCGCTGATATATGCACGGAAGCACACGAATGCCGTTCAC
CCCCCCGGCTGGCACATACATACATACACTGACAGCCCCCCGTTTACCTT
AAAGCGCCTCTTGTCTCTGGCACTGATCGGGATGCCAAAGCACAAAAAGT
ACACCAGAGAGGTCTACGTAAACGACAGGATTTGGCTCAAAAAGGGTGAA
CGCGGCAATGCCTGCAGTCCTTCGAGCGGTACCTTTTCAGATAGGCTACA
TAGTTCTCGAGAGTTTTCGATTCCGAACTTTTTCCTCGCACACACTCCAT
TGTGAGCCCCAGTCAAGATGTGGGCGCGATTCGAAACGAGGCGAGCCCGT
TCGTCGGTAGCACTCGCCGAACATTTTGTCAGCCGAGAACCGTGTTTTAC
GTGCCCATCAGTGCCGTCCCCCCGCCGCTTTCAGGACAAGGAGCGGTACT
CCGCCCCCAATTGAATTGCATAGCCAATGACCAAACGACCGCAAGTAAGT
CGAGAACATCCTCCCCCCTTCCCTCCCCCTCCCTCCCCCGCCACACGCAG
ATGTTCGCCACTATCTTTTTCTCCATCATTTCTTTCTACGCGAAACAGGC
CTTCAACTACGGCTCTACCAACAACCAGCGAACCGCCCGATTCTTGTACC
ACGTGCGATGGATCACCTTCAGCGCGCAGGTAATTGTTTTTTCTGCCTCT
TCCGGGTGGAGCACGCAGAAGTCCCTCCGAAACGTTTTGTCTTTTGGCCC
TATCAGCTGCTGTTGCGCGGTAGGTCCACCTGTGCAGAGCGGTGCGCCAA
CTGCTCGTTCGGGCTGCTTTGTTGGAACCTCTCGACGCGTTTCTTTGGGG
CTTTGGTAACAGCCCGGTTGACAGGGACGACAGGCTTGTCACCCGCCCTC
GTGAGCCTTGCTGACAACACCCCCCGCTACCACCCCTTGATGCGGTGCGC
TCCGGGCACGAAATGTTGCGTATACGGTAGACTATTCTCCGGAACAATAT
AGGTGCAGCTGCCATGAATATATGTACCCATCTCGAACGAGCAGTTGTGG
CTACTACAGGTTGCAGGCAGGTGTCTTTTCTCATCGATCGAACGCCTGCT
GCTCACCCGGCACCGCTCCCGCGCGCCCTTGCGTATGGATTGGCGGCTGG
CGGTATGGCAGGCATGCTACACGATCGGCTTCCTCTTGTTCCTGACAGGC
ATCCTGTTGGAGGCTACCGCGGGGTACGACGAGTATTGGGCGCTCGTCGG
GGTGGTGCCAATATTGGTGCTGGGTGAGTTGAAGTAGTATGTACGCTGCT
AGCTTCAAGCAAGATAGTGTTTGCTCCTTTTCGTTTGACGACGAAAACGT
GATCATGGAAAGGGTCGCCGGGCTGTTCACCGCTGTCCTTTAGTGTTGGC
GGTGGGAGTATCAAGTCGGGCACGCAGCGCGTATCGTGTTGCTTGATCTT
GGTTCTATCACGCGCTGCGAGCCCTCCTTTTTCATCAAGATCCTTTGATT
GGCTGTTCAAGGAGATTCCCCGCAGGATTTTTCATTTTGTGTTTAGCTGC
TGGCTAATTTCACCCCCCCCCCCGACCAAGCTGACTCCGCAAATTACATG
ATGAATTGCAAGCCCAGCAAATTTCCCCCCTGCCCTCCCGCCACATCGCC
AAGTTATCTTGGCGCAAACTCCCCCCACGAGCCAAACTCACACGACTCTA
CCCAACCGACCCCACCGAAAATCAGGTGTCGTGTGCTGGGTGATATCGGC
TTACGCGTTGATCTCCTTGCGCATGGGCATGTGGACGCACAACCTGCTCT
TGTTCGACGCAGAAACGAAGCTGATCGATGGAAAGCGGTCGGCCTACATC
CCTGCCCCGACTACCTTCCGCGGGTGGCTCGACCGTGACAAGGGTGATGA
TGGTGGTGGCGATTCGGACAGCAACGACAATCCGTGCTAATTGGGTAGGA
CACGTGCCGTTTGGGGGACGCCCCCCCCCCCCCCCCCTCCTGGGCCCCGC
CATGTATTGCGTACAGCAGTGCGCTTCGTGTCACGCGAAGAGTAATCAAA
CCGGGCAGGATTATTTCATCCGTGAAGCGACCGGCAACTGAACAGGCTCT
CCTTTCCGGTTGGTTTGAGATGCTCCCATCAAAACTGGTCGATGTACGGT
CGCGAGACTTGGACGATCGAGCGCATCGAGATTCGTCCCAGAGCAGTGAG
AGTCACGGTGTTGCTTCGGACATCCAAATTGAAATCAAACGCAGGGTAAC
CGCAAGTTGGTTTCGTCTCCAGTGGGTACACGTGTGGTGGCATGTTCGGG
GCAAAATAGGGCGGGGGGGGGGGGGGGGGGCCGGGGGGGTGTTACAAGCA
ACTTCCCCTCTGGCGCCGGGGGGTCCGGGGTTGNNNNNNNNNNAAAGGAA
AGACAACCGGGGGGAACCCGGGGGGGGGGTTCGCGTCCGGGGGGCGCCGG
GGGGGGGGGGTTGGGGGGGGAAAAAAGGGGGGGGGGGGGGGGGGGGGGGG
TCACGTATTCTGAAAACAGAAAGCACCCCTTTTCACAGTGTTTTCGTGTG
TGGTAAACCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig208:9901..12611-

>mRNA_L-elsbetiae_contig208.6281.1 ID=mRNA_L-elsbetiae_contig208.6281.1|Name=mRNA_L-elsbetiae_contig208.6281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig208:9901..12611- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGACTCTGGTTTTCGCTCTCGAGATGATGACTCTGGTTTTCGCTCT
CGAGATGTTCGCCACTATCTTTTTCTCCATCATTTCTTTCTACGCGAAAC
AGGCCTTCAACTACGGCTCTACCAACAACCAGCGAACCGCCCGATTCTTG
TACCACGTGCGATGGATCACCTTCAGCGCGCAGATGTTCGCCACTATCTT
TTTCTCCATCATTTCTTTCTACGCGAAACAGGCCTTCAACTACGGCTCTA
CCAACAACCAGCGAACCGCCCGATTCTTGTACCACGTGCGATGGATCACC
TTCAGCGCGCAGGCATGCTACACGATCGGCTTCCTCTTGTTCCTGACAGG
CATCCTGTTGGAGGCTACCGCGGGGTACGACGAGTATTGGGCGCTCGTCG
GGGTGGTGCCAATATTGGTGCTGGGCATGCTACACGATCGGCTTCCTCTT
GTTCCTGACAGGCATCCTGTTGGAGGCTACCGCGGGGTACGACGAGTATT
GGGCGCTCGTCGGGGTGGTGCCAATATTGGTGCTGGGTGTCGTGTGCTGG
GTGATATCGGCTTACGCGTTGATCTCCTTGCGCATGGGCATGTGGACGCA
CAACCTGCTCTTGTTCGACGCAGAAACGAAGCTGATCGATGGAAAGCGGT
CGGCCTACATCCCTGCCCCGACTACCTTCCGCGGGTGGCTCGACCGTGAC
AAGGGTGATGATGGTGGTGGCGATTCGGACAGCAACGACAATCCGTGCTA
AGTGTCGTGTGCTGGGTGATATCGGCTTACGCGTTGATCTCCTTGCGCAT
GGGCATGTGGACGCACAACCTGCTCTTGTTCGACGCAGAAACGAAGCTGA
TCGATGGAAAGCGGTCGGCCTACATCCCTGCCCCGACTACCTTCCGCGGG
TGGCTCGACCGTGACAAGGGTGATGATGGTGGTGGCGATTCGGACAGCAA
CGACAATCCGTGCTAA
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