mRNA_L-elsbetiae_contig208.6285.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig208.6285.1
Unique NamemRNA_L-elsbetiae_contig208.6285.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig208.6285.1 vs. uniprot
Match: A0A6H5L1Y3_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Y3_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.830e-15
Identity = 47/91 (51.65%), Postives = 57/91 (62.64%), Query Frame = 2 
Query:    2 AIRRRVAKPRLVRETDLPGSPPAAAAAWVARRGRSMLLPLFGGSRRCSGLDP--LSPDALEGIVLPPNLEQRLRVMATSIRSAYSRGAPLP 268
            AI+R+   PRLVRE+DLPGSPPAAA AW+ARRGR++LLPL G S  CS   P  L+P  L  +             A +  S+Y RGAPLP
Sbjct:   13 AIQRKATTPRLVRESDLPGSPPAAAVAWIARRGRAVLLPLLGKSSHCSRDIPHTLAPSRLRALWC------FYTTHAVTASSSYRRGAPLP 97
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BLAST of mRNA_L-elsbetiae_contig208.6285.1 vs. uniprot
Match: D7FS39_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS39_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 3.080e-14
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 2 
Query:    2 AIRRRVAKPRLVRETDLPGSPPAAAAAWVARRGRSMLLPLFGGSRRCS 145
            AIRRR  KPRLVRE+DLPGSPPAAA AW+ARRGR++LLPL G S  CS
Sbjct:  503 AIRRRATKPRLVRESDLPGSPPAAAVAWIARRGRAVLLPLLGKSSHCS 550
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig208.6285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1Y3_9PHAE1.830e-1551.65AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FS39_ECTSI3.080e-1477.08AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig208contigL-elsbetiae_contig208:40221..41523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size273
Cds size270
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig208.6285.1prot_L-elsbetiae_contig208.6285.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig208 40221..41521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815854.1931753-CDS-L-elsbetiae_contig208:40220..403641622815854.1931753-CDS-L-elsbetiae_contig208:40220..40364Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 40221..40364 +
1691683147.6332514-CDS-L-elsbetiae_contig208:40220..403641691683147.6332514-CDS-L-elsbetiae_contig208:40220..40364Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 40221..40364 +
1622815854.2087054-CDS-L-elsbetiae_contig208:40790..408831622815854.2087054-CDS-L-elsbetiae_contig208:40790..40883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 40791..40883 +
1691683147.6432111-CDS-L-elsbetiae_contig208:40790..408831691683147.6432111-CDS-L-elsbetiae_contig208:40790..40883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 40791..40883 +
1622815854.2195482-CDS-L-elsbetiae_contig208:41488..415211622815854.2195482-CDS-L-elsbetiae_contig208:41488..41521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 41489..41521 +
1691683147.6530871-CDS-L-elsbetiae_contig208:41488..415211691683147.6530871-CDS-L-elsbetiae_contig208:41488..41521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 41489..41521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig208.6285.1

>prot_L-elsbetiae_contig208.6285.1 ID=prot_L-elsbetiae_contig208.6285.1|Name=mRNA_L-elsbetiae_contig208.6285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
SDSAKGRKAPARERDGPSRVPTGRGRRLGGPTRPLDAATAVRGIAPMQRI
GPPVAGRTGRDCLASELGTATTCYGHLDPLGVQPRSPPAP
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mRNA from alignment at L-elsbetiae_contig208:40221..41523+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig208.6285.1 ID=mRNA_L-elsbetiae_contig208.6285.1|Name=mRNA_L-elsbetiae_contig208.6285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1303bp|location=Sequence derived from alignment at L-elsbetiae_contig208:40221..41523+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGATTCGGCGAAGGGTCGCAAAGCCCCGGCTCGTGAGAGAGACGGACC
TTCCCGGGTCCCCACCGGCCGCGGCCGCCGCCTGGGTGGCCCGACGCGGC
CGCTCGATGCTGCTACCGCTGTTCGGGGGATCGCGCCGATGCAGGTGAGT
TGGCCGACACAACGCACGCGACATCCCTCTTCTCTCGTTGCGTGCAAGTG
CTTGTGGGTCGACCAGCTCGCGCTGTAACGAACGCAGGGTCTGTGACACC
GCAAAAGTATGCACTGCATGCCCATCCATCCATGACGTAACCTGGAGCAC
CATAGATTGCGGAGGGCACCACGGAGCTACATTTGGCTCGACACAGGGAA
ACTTGCCGGGTCCGGACAAACATATTGGGAGCCCTCTCTTGATGCTATAA
GTTCTGGGCTGGTGGAGTGGTTTGTCTTATGCTTCCGTTAGCGAACGTAC
CTAGAGTGGGCGAGCTTGCAAGTGCCTGCTGGGTAGTATAGACAACCTGC
CATGCGCAGGTAAAATGTAAAAACAGTCCCGCCTCCCTCCACCCCCCGTT
CTCTGGCGAACCATTCTCAGCGGATTGGACCCCCTGTCGCCGGACGCACT
GGAAGGGATTGTCTTGCCTCCGAACTTGGAACAGCGACTACGTGTTATGG
CCACCTCGATCCGGTACGTGGAGGGGGATACTCACCCAATGAATGAAGTG
GCCGAGACACCCGACGGCACCGTCTCCTGCTCTTACCGTCACATTGGAAA
ACGACCATCACAGGAAATGTTTGATATGTTACCACCGCGGTGGCCGCACG
AAATTTACTTGCCGAGGTAGGCGACCACGGACGTAAATTCGCGCTTGGAG
AGCCGAGTTGAACGAACAACCACCCAGAAACCCCATGTATCTCTCGATCA
ATCCTTGTCTGTTGACTCAGCTAGGGACGAGGTGAGTAGGTGCTCCACGC
CACGATGAGCCCCCCTGCTCAACCCCCCCCCCCCCCCCCCCCCCCCCCCG
CCCCCGGCCGCCCCCCCCCCGCACCCCCCTCGGGTGCTCNNNNNNNNNNC
ATTGCTGTTTTTTGGCCCCGCGCGGGGCGGGGGGGGGCAGGGCCCCCCCC
CCCCCCTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCTGCTC
AACTGAGCGTACCCCGTCATCATTCCTCGTGCGGTACTGTTCGACCCCGT
CTCTCTAGCCTATCCATCGGCTGACAACGCTGGCTCTTGCCTTGACCCCC
CACGTCTCAAAAACCCAGCTCGGCGTACAGCCGAGGAGCCCCCCTGCCCC
ACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig208:40221..41523+

>mRNA_L-elsbetiae_contig208.6285.1 ID=mRNA_L-elsbetiae_contig208.6285.1|Name=mRNA_L-elsbetiae_contig208.6285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig208:40221..41523+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGATTCGGCGAAGGGTCGCAAAGCCCCGGCTCGTGAGAGAGACGGACC
TTCCCGGGTCCCCACCGGCCGCGGCCGCCGCCTGGGTGGCCCGACGCGGC
CGCTCGATGCTGCTACCGCTGTTCGGGGGATCGCGCCGATGCAGAGCGAT
TCGGCGAAGGGTCGCAAAGCCCCGGCTCGTGAGAGAGACGGACCTTCCCG
GGTCCCCACCGGCCGCGGCCGCCGCCTGGGTGGCCCGACGCGGCCGCTCG
ATGCTGCTACCGCTGTTCGGGGGATCGCGCCGATGCAGCGGATTGGACCC
CCTGTCGCCGGACGCACTGGAAGGGATTGTCTTGCCTCCGAACTTGGAAC
AGCGACTACGTGTTATGGCCACCTCGATCCGCGGATTGGACCCCCTGTCG
CCGGACGCACTGGAAGGGATTGTCTTGCCTCCGAACTTGGAACAGCGACT
ACGTGTTATGGCCACCTCGATCCGCTCGGCGTACAGCCGAGGAGCCCCCC
TGCCCCACTCGGCGTACAGCCGAGGAGCCCCCCTGCCCCA
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