mRNA_L-elsbetiae_contig20786.6277.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20786.6277.1
Unique NamemRNA_L-elsbetiae_contig20786.6277.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20786.6277.1 vs. uniprot
Match: Q8QNN4_ESV1K (EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNN4_ESV1K)

HSP 1 Score: 130 bits (327), Expect = 3.600e-35
Identity = 97/116 (83.62%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 SLSSTVTFVGETSINTXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFVSVWRLVVTIITAAVGETCYLAHKPVGRIFDFISDYMLSLQAFSSGLPGLAKVLQAQATDVKTGVNLKSI 348
            SL+STV+F+GET+IN XXXXXXXXXXXXXXXXXXXXXXXXXXXXQ VSVWRLVVTI+TA +GETCYLA   +GR+FDF SDY+LSLQAFSSGLPGLAKVL+AQA DVKTGVNL SI
Sbjct:   64 SLASTVSFIGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLVSVWRLVVTILTATLGETCYLATNGIGRVFDFFSDYLLSLQAFSSGLPGLAKVLKAQADDVKTGVNLGSI 179
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BLAST of mRNA_L-elsbetiae_contig20786.6277.1 vs. uniprot
Match: D8LP64_ECTSI (EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP64_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 8.500e-34
Identity = 93/116 (80.17%), Postives = 102/116 (87.93%), Query Frame = 1 
Query:    1 SLSSTVTFVGETSINTXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFVSVWRLVVTIITAAVGETCYLAHKPVGRIFDFISDYMLSLQAFSSGLPGLAKVLQAQATDVKTGVNLKSI 348
            SL+STV+FVGET+IN XXXXXXXXXXXXXXXXXXXXXXXXXXX Q VSVWRLVV IITA +GETCYLA   + R+FDF SDYMLSLQAF SGLPGLAKVL+AQ  DVKTGVN+ +I
Sbjct:    6 SLASTVSFVGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLVSVWRLVVVIITATLGETCYLATNGIDRVFDFFSDYMLSLQAFRSGLPGLAKVLKAQVDDVKTGVNVTNI 121
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20786.6277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNN4_ESV1K3.600e-3583.62EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP64_ECTSI8.500e-3480.17EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20786contigL-elsbetiae_contig20786:839..1186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionEsV-1-27
Ec32 orthologEc-06_006480.1
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815853.9669776-CDS-L-elsbetiae_contig20786:838..11861622815853.9669776-CDS-L-elsbetiae_contig20786:838..1186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20786 839..1186 -
1691683147.5284863-CDS-L-elsbetiae_contig20786:838..11861691683147.5284863-CDS-L-elsbetiae_contig20786:838..1186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20786 839..1186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20786.6277.1prot_L-elsbetiae_contig20786.6277.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20786 839..1186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20786.6277.1

>prot_L-elsbetiae_contig20786.6277.1 ID=prot_L-elsbetiae_contig20786.6277.1|Name=mRNA_L-elsbetiae_contig20786.6277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
SLSSTVTFVGETSINTLSFVRDTVFSILTFVVQTVTSIVLFVLNQFVSVW
RLVVTIITAAVGETCYLAHKPVGRIFDFISDYMLSLQAFSSGLPGLAKVL
QAQATDVKTGVNLKSI
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mRNA from alignment at L-elsbetiae_contig20786:839..1186-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20786.6277.1 ID=mRNA_L-elsbetiae_contig20786.6277.1|Name=mRNA_L-elsbetiae_contig20786.6277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=348bp|location=Sequence derived from alignment at L-elsbetiae_contig20786:839..1186- (Laminarionema elsbetiae ELsaHSoW15)
TCACTGAGTTCCACGGTGACGTTCGTTGGCGAGACCTCCATCAACACGCT
TTCTTTTGTGAGAGATACCGTGTTCTCCATTCTCACGTTCGTCGTTCAGA
CCGTGACAAGCATCGTGCTGTTTGTTCTCAATCAGTTTGTATCGGTGTGG
AGACTTGTGGTAACCATAATTACCGCGGCCGTTGGAGAGACGTGCTACCT
CGCACATAAACCTGTAGGTAGGATATTTGACTTCATATCGGATTACATGC
TGTCTCTACAGGCTTTCTCATCGGGTCTACCCGGCCTGGCCAAGGTTCTT
CAAGCACAGGCTACCGATGTCAAAACGGGAGTCAATTTGAAATCTATT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20786:839..1186-

>mRNA_L-elsbetiae_contig20786.6277.1 ID=mRNA_L-elsbetiae_contig20786.6277.1|Name=mRNA_L-elsbetiae_contig20786.6277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig20786:839..1186- (Laminarionema elsbetiae ELsaHSoW15)
TCACTGAGTTCCACGGTGACGTTCGTTGGCGAGACCTCCATCAACACGCT
TTCTTTTGTGAGAGATACCGTGTTCTCCATTCTCACGTTCGTCGTTCAGA
CCGTGACAAGCATCGTGCTGTTTGTTCTCAATCAGTTTGTATCGGTGTGG
AGACTTGTGGTAACCATAATTACCGCGGCCGTTGGAGAGACGTGCTACCT
CGCACATAAACCTGTAGGTAGGATATTTGACTTCATATCGGATTACATGC
TGTCTCTACAGGCTTTCTCATCGGGTCTACCCGGCCTGGCCAAGGTTCTT
CAAGCACAGGCTACCGATGTCAAAACGGGAGTCAATTTGAAATCTATTTC
ACTGAGTTCCACGGTGACGTTCGTTGGCGAGACCTCCATCAACACGCTTT
CTTTTGTGAGAGATACCGTGTTCTCCATTCTCACGTTCGTCGTTCAGACC
GTGACAAGCATCGTGCTGTTTGTTCTCAATCAGTTTGTATCGGTGTGGAG
ACTTGTGGTAACCATAATTACCGCGGCCGTTGGAGAGACGTGCTACCTCG
CACATAAACCTGTAGGTAGGATATTTGACTTCATATCGGATTACATGCTG
TCTCTACAGGCTTTCTCATCGGGTCTACCCGGCCTGGCCAAGGTTCTTCA
AGCACAGGCTACCGATGTCAAAACGGGAGTCAATTTGAAATCTATT
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