mRNA_L-elsbetiae_contig2077.6271.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2077.6271.1
Unique NamemRNA_L-elsbetiae_contig2077.6271.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig2077.6271.1 vs. uniprot
Match: D7FLL3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL3_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.520e-11
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:  145 LGILAVLSRCRACS----IWRRQSRGGKRVSFSDADNSVIE-ISLDLTDEERKALNWSPAELRQFSRAVAVEGWLEEWGS 369
            + I A L+ C A +    ++  + R GKRVSFS  ++ + +     LT+EERK L++SPAEL+QFSR++ V+ WLEEWGS
Sbjct:    5 IAITAALTACTAIAFNFGVFFPRRRAGKRVSFSTREDMIHDGYGHHLTEEERKDLSYSPAELQQFSRSLDVDAWLEEWGS 84
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2077.6271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLL3_ECTSI1.520e-1146.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2077contigL-elsbetiae_contig2077:3638..6286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_000710.1
Exons1
Model size2649
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2077.6271.1prot_L-elsbetiae_contig2077.6271.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2077 3749..4009 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815853.5732014-UTR-L-elsbetiae_contig2077:3637..37481622815853.5732014-UTR-L-elsbetiae_contig2077:3637..3748Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2077 3638..3748 +
1691683147.2802262-UTR-L-elsbetiae_contig2077:3637..37481691683147.2802262-UTR-L-elsbetiae_contig2077:3637..3748Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2077 3638..3748 +
1622815853.5932457-UTR-L-elsbetiae_contig2077:4009..62861622815853.5932457-UTR-L-elsbetiae_contig2077:4009..6286Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2077 4010..6286 +
1691683147.2977834-UTR-L-elsbetiae_contig2077:4009..62861691683147.2977834-UTR-L-elsbetiae_contig2077:4009..6286Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2077 4010..6286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815853.5838485-CDS-L-elsbetiae_contig2077:3748..40091622815853.5838485-CDS-L-elsbetiae_contig2077:3748..4009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2077 3749..4009 +
1691683147.2895947-CDS-L-elsbetiae_contig2077:3748..40091691683147.2895947-CDS-L-elsbetiae_contig2077:3748..4009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2077 3749..4009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2077.6271.1

>prot_L-elsbetiae_contig2077.6271.1 ID=prot_L-elsbetiae_contig2077.6271.1|Name=mRNA_L-elsbetiae_contig2077.6271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
MREGAFAAITTLGILAVLSRCRACSIWRRQSRGGKRVSFSDADNSVIEIS
LDLTDEERKALNWSPAELRQFSRAVAVEGWLEEWGS*
back to top

mRNA from alignment at L-elsbetiae_contig2077:3638..6286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2077.6271.1 ID=mRNA_L-elsbetiae_contig2077.6271.1|Name=mRNA_L-elsbetiae_contig2077.6271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2649bp|location=Sequence derived from alignment at L-elsbetiae_contig2077:3638..6286+ (Laminarionema elsbetiae ELsaHSoW15)
TGGCGGGACAGAGGACCACTAAACGACCCGCTGCTTTGCTCCTGGGCCGC
GAACAGGAGATAAACAAGGTCGGAATCAACACGGATATACCATCACGCAA
GAAGTAGGTAGATGAGGGAGGGAGCTTTCGCAGCGATCACGACGCTCGGC
ATCCTGGCCGTGTTGTCGAGATGCCGAGCATGCAGCATTTGGCGGCGGCA
ATCGCGGGGAGGGAAACGGGTGTCCTTCTCGGACGCAGATAACAGCGTCA
TCGAGATCAGCCTGGACCTCACGGACGAAGAGAGGAAGGCGCTCAACTGG
AGTCCAGCAGAGCTCAGGCAGTTTTCGAGGGCGGTTGCTGTTGAAGGCTG
GTTAGAGGAATGGGGCAGTTGATCATCAGCGAGACGGTGATGGATGCATG
TGGCGGAGATACAGAGGAGATGTGTTGCGTTTGGGTGCAGCAGGGAGAGC
GGGAGAGCTGGCGCGGCCTCCAAGAGTTTGAGGTAGTGTGGTGGGATTGC
TGGCCTGGCTGCCTTGCTGGCATCTGCTTGACTAGGCTGTGGTGGCGTCG
ACTCTCGCTGTCCAAAGTTCAAACCCGCGCGTTTGCATGTGTTCGGTGAT
CGGAACGGTATCAATTTTTTAGTTTTGAGTCTATTCAGCTGTTGCGCTGG
CAGTTGCTGGGATGTTCCGGCGTAGTGCTTGCACTCGAGTTAGATTCCTA
TATAGAGTGCGAACGGGGGTGAATGGAGTTAGAGTTTCGTTTGGTGTGTT
CCATCTCGTGTTTCTATTCTGTGTCTGTTGCAGTGTGTTGTGTGTGTTTC
GTGTAAAATTACGTGCCACACGTGTCGATCGTACGTCAGGTAGGGACCGG
TTCGTGCGGTGGTGAACGGTGCGGGTAAGCTCCACAAGAAAACCAGCACC
GCATACCGAAGTATTCGCTCGTTTTGTTGTTTATGCTTGCGGTACTGTAG
TGCTAATTTCTCGCCTCCGTGTGTCGTTTTTTCTGTAGATGCCTGCGCGT
TACTAGCTGCAGTTTGTAGTTAGTGCCCACACACACACACGTCGTCGGTA
CAATTAACACACGTGTTCAATCTCGGTGGACCGTTGAATCTGCTTTCGAA
TCTTGGATTCTTTCGATGATGCAGAGGGGAGATATAGATAGATATCGTTC
CCCCAACAAGCGAACGCGCTACAAAAGATAGTTCTTACTGAGGCCTTTCA
CAACAAGAACAAACAGCACGGACTGGACTGGACTGCCTGCCTGTTTGGTT
TCTCTTCGAAATGAATTGAAGTCGCGCGTTTTCTTTGTTTTCTTTGTTTT
TTTTGTCCTCGGAAGACCGGGCGTACTTGGAAGTTTGTGTCGATTTTGGA
AGTTGGAAGTTTGTGTCAAACGAGATGTCCTAAAAGCCTAAAAGTCCGTG
TTGCCTCAAGTATACTGAGGGTATGATATTCATGTGGTTAAAAAACAAAT
GTACCGGCCGTGTGAACGGAGTTTTAGTTTCGTGTGTGTGTGTGTGTATG
TGTGTTTGTTTTTTTGAGGTGGGTATCTAGATGCGCGCGAGAGCGCGTGT
TATTACACGGACACGCGCCACGCTTTTTTGCGTGCATGCACCGCTCGCTT
TGCTGGCTTTTCGTGCATAGATCGTTTTTGTGTGTGTTTTGCTTTTTTTG
CCCGTTTAGATAAGCGGGGGCAGGGAGGCAGGCCCCTTTCCCTTTTCCCT
TAAATCAATTTTGTTTTTGTCTTGCCGTGTTTTTCGCGTTTGCTGTGATG
AGAGAGAGGAGAGTAGGCCGGAAATATTCAGTTACAATACCATTGTAGTA
GTGCATCGCACAAAAGCTACTTGTGAGGCGGGCGTCGGCACTACTGTGTG
CGCAGTTTCGAGTATGTATGGACTGAAGCTGCGCATCACTGGTTCACTTG
GTGGAGGTAAACGTGTGTGTGTGTGCGTTTTTTTTGTGTGTTGGTACACG
GTAGCCGCGGTCCTCGTTGTCTGTACGTCGGATTCCAAAAGAGAAGCCAC
AGATTTATAAATTACTATTCATGGCGTTTCGGAAGGTAGTCTAGTGAGTT
TGCTCTTTTTGCCAACGTCGGAAATTGAACTCCGAAAGAGAGGAGGGGGC
TCGTGCTTGTGTGCTCGTTTTTTTTACGAAAGCTGCATGGGTGTGGTATT
TTCAGCAGGTTGCGTCGGAGATTTACCCATGCGGGGATGGCGGTCAACGT
TTTTACGGTACTACCGTATACTGCACAAGATAACACACCCCCCTGGACCG
ATTTTCCAAAGCTTGGTTACTCCGCAACGAGTATGACTCTTAATACCAAA
CGGCACGTTTTCGGACAGCTCTTGGTGAGATTTTTCCAGCGCTGCCCTTT
TCGGGACTGACCTTCGCTGTGGAGTATATTACTCTTGAGCTTTGAAAATC
GGTCGAGGGTGTGTGTGTTATCTTGTGTCGTACACGACGGTACCACTACT
GTACAATAAGTACCGTTTTGTTCTTGGGTGCCATAGGTAGTAAAGAGTAA
AGAGTATATGTAGAGCAGTCGCCTCCGAGTAATTTTAATCAGTTTTGAGG
TATTTAGGGGTCGGAAGGTTGCTCATTATTTCTGGCATCACAGGAGCGAC
TCGAGGGTAAGCGTTGTCTGTTTTTCCTTCTTTCGCGGCATTGTTGTTA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2077:3638..6286+

>mRNA_L-elsbetiae_contig2077.6271.1 ID=mRNA_L-elsbetiae_contig2077.6271.1|Name=mRNA_L-elsbetiae_contig2077.6271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig2077:3638..6286+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGGAGGGAGCTTTCGCAGCGATCACGACGCTCGGCATCCTGGCCGT
GTTGTCGAGATGCCGAGCATGCAGCATTTGGCGGCGGCAATCGCGGGGAG
GGAAACGGGTGTCCTTCTCGGACGCAGATAACAGCGTCATCGAGATCAGC
CTGGACCTCACGGACGAAGAGAGGAAGGCGCTCAACTGGAGTCCAGCAGA
GCTCAGGCAGTTTTCGAGGGCGGTTGCTGTTGAAGGCTGGTTAGAGGAAT
GGGGCAGTTGAATGAGGGAGGGAGCTTTCGCAGCGATCACGACGCTCGGC
ATCCTGGCCGTGTTGTCGAGATGCCGAGCATGCAGCATTTGGCGGCGGCA
ATCGCGGGGAGGGAAACGGGTGTCCTTCTCGGACGCAGATAACAGCGTCA
TCGAGATCAGCCTGGACCTCACGGACGAAGAGAGGAAGGCGCTCAACTGG
AGTCCAGCAGAGCTCAGGCAGTTTTCGAGGGCGGTTGCTGTTGAAGGCTG
GTTAGAGGAATGGGGCAGTTGA
back to top