mRNA_L-elsbetiae_contig2077.6273.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2077.6273.1
Unique NamemRNA_L-elsbetiae_contig2077.6273.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2077.6273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2077contigL-elsbetiae_contig2077:16301..16854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size554
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2077.6273.1prot_L-elsbetiae_contig2077.6273.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2077 16419..16727 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815853.5213423-UTR-L-elsbetiae_contig2077:16300..164181622815853.5213423-UTR-L-elsbetiae_contig2077:16300..16418Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2077 16301..16418 +
1691683147.2466688-UTR-L-elsbetiae_contig2077:16300..164181691683147.2466688-UTR-L-elsbetiae_contig2077:16300..16418Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2077 16301..16418 +
1622815853.5420887-UTR-L-elsbetiae_contig2077:16727..168541622815853.5420887-UTR-L-elsbetiae_contig2077:16727..16854Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2077 16728..16854 +
1691683147.2712784-UTR-L-elsbetiae_contig2077:16727..168541691683147.2712784-UTR-L-elsbetiae_contig2077:16727..16854Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2077 16728..16854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815853.5322652-CDS-L-elsbetiae_contig2077:16418..167271622815853.5322652-CDS-L-elsbetiae_contig2077:16418..16727Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2077 16419..16727 +
1691683147.2614043-CDS-L-elsbetiae_contig2077:16418..167271691683147.2614043-CDS-L-elsbetiae_contig2077:16418..16727Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2077 16419..16727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2077.6273.1

>prot_L-elsbetiae_contig2077.6273.1 ID=prot_L-elsbetiae_contig2077.6273.1|Name=mRNA_L-elsbetiae_contig2077.6273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MRHSWVHHHHGQPRRGKHWHPEVLRTTRRRGHDLHLFLAGLESTAKEVVE
LERVAAPLLVLMEGGGAAPPRPSRQSLPRKGAGMPTNEPAGVPVMGTYVR
LG*
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mRNA from alignment at L-elsbetiae_contig2077:16301..16854+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2077.6273.1 ID=mRNA_L-elsbetiae_contig2077.6273.1|Name=mRNA_L-elsbetiae_contig2077.6273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=554bp|location=Sequence derived from alignment at L-elsbetiae_contig2077:16301..16854+ (Laminarionema elsbetiae ELsaHSoW15)
GCAAGAGATGCACCCACGGCGGTTGTACCAAGCACCCGTCGCACGGCAAC
TGGCAAAAGGCGGAGTACTGCTGCCGTGATCATGCCGAGGACAGAATGGT
GGCCGTCAAGCACAAGAGATGCGCCATTCCTGGGTGCACCACCACCATGG
CCAGCCACGGCGAGGAAAACACTGGCACCCGGAAGTTCTGCGCACGACAC
GCAGAAGAGGGCATGATCTGCATTTATTTCTGGCCGGCCTAGAGAGCACA
GCCAAAGAAGTGGTAGAACTGGAAAGGGTAGCTGCACCACTGCTGGTCCT
GATGGAAGGCGGAGGAGCCGCACCCCCTCGCCCATCCCGGCAGAGCCTTC
CTCGGAAAGGAGCAGGGATGCCAACAAACGAGCCCGCCGGAGTGCCGGTG
ATGGGGACTTACGTCCGGTTGGGGTAAAAAGAGAGGGGGTTGACAACAGC
GTGCCCGGCGACGATATGACCGGGACATGTCCGGAACCAGATGCTAGGGT
GAAGACGGAAGACTTGGGGGTGTCTTGCAAGGCGGAGCCTACGGAAGCTG
CAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2077:16301..16854+

>mRNA_L-elsbetiae_contig2077.6273.1 ID=mRNA_L-elsbetiae_contig2077.6273.1|Name=mRNA_L-elsbetiae_contig2077.6273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig2077:16301..16854+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCCATTCCTGGGTGCACCACCACCATGGCCAGCCACGGCGAGGAAA
ACACTGGCACCCGGAAGTTCTGCGCACGACACGCAGAAGAGGGCATGATC
TGCATTTATTTCTGGCCGGCCTAGAGAGCACAGCCAAAGAAGTGGTAGAA
CTGGAAAGGGTAGCTGCACCACTGCTGGTCCTGATGGAAGGCGGAGGAGC
CGCACCCCCTCGCCCATCCCGGCAGAGCCTTCCTCGGAAAGGAGCAGGGA
TGCCAACAAACGAGCCCGCCGGAGTGCCGGTGATGGGGACTTACGTCCGG
TTGGGGTAAATGCGCCATTCCTGGGTGCACCACCACCATGGCCAGCCACG
GCGAGGAAAACACTGGCACCCGGAAGTTCTGCGCACGACACGCAGAAGAG
GGCATGATCTGCATTTATTTCTGGCCGGCCTAGAGAGCACAGCCAAAGAA
GTGGTAGAACTGGAAAGGGTAGCTGCACCACTGCTGGTCCTGATGGAAGG
CGGAGGAGCCGCACCCCCTCGCCCATCCCGGCAGAGCCTTCCTCGGAAAG
GAGCAGGGATGCCAACAAACGAGCCCGCCGGAGTGCCGGTGATGGGGACT
TACGTCCGGTTGGGGTAA
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