mRNA_L-elsbetiae_contig20762.6269.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20762.6269.1
Unique NamemRNA_L-elsbetiae_contig20762.6269.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20762.6269.1 vs. uniprot
Match: D7FN13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN13_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 1.470e-40
Identity = 98/177 (55.37%), Postives = 112/177 (63.28%), Query Frame = 1 
Query:    1 QEGLDGADTAFRITALGEASLEHVVGGPDNQWARSFFSHEEKSXXXXXXXXXDIHEGTRGLSVPLTLLAARLQGAVATGRGPAVARALTATVPPFGGEWMLPRARPVQEWAASVALEAWDEACSLLARLRPDSPXXXXXXXXXXXXXXXXXXERLEVSALDAVARRGRQVERIVEAS 531
            +E LD ADTA  + A+GEASL HVVGGPDN WARSFF  E+ +          +         PL LLAARLQGAVA GRGPAVAR+LTA V P GGEWMLPRARPVQEWAA+VALEAWDEA SL A L                       + + V+ L+A+ARR RQ ERI+EAS
Sbjct:  622 EEDLD-ADTAHDVNAVGEASLGHVVGGPDNLWARSFFEPEDGNREHD-----SVAAAAGAAPSPLMLLAARLQGAVALGRGPAVARSLTAVVLPRGGEWMLPRARPVQEWAAAVALEAWDEASSLAAAL---------LAPPGASWPSVPWLDDVAVT-LEALARRSRQAERILEAS 782
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BLAST of mRNA_L-elsbetiae_contig20762.6269.1 vs. uniprot
Match: A0A6H5KCT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT0_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 2.040e-40
Identity = 99/184 (53.80%), Postives = 111/184 (60.33%), Query Frame = 1 
Query:    1 QEGLDGADTAFRITALGEASLEHVVGGPDNQWARSFFSHEEKSXXXXXXXXXDIHEGTRGLSVPLTLLAARLQGAVATGRGPAVARALTATVPPFGGEWMLPRARPVQEWAASVALEAWDEACSLLARLR-------PDSPXXXXXXXXXXXXXXXXXXERLEVSALDAVARRGRQVERIVEAS 531
            +E LD ADTA  ITA+GEASL+HVVGGPDN WAR FF  ++ +                    PL LLAARLQGAVA GRGPAVAR+LTA V P GGEWMLPRARPVQEWAA+VALEAWDEA SL A L        P +P                         L+A+ARR RQ ERI+EAS
Sbjct:  768 EEDLD-ADTAHDITAVGEASLDHVVGGPDNLWARPFFETKDGNGEHHSAAVAGAAPS------PLMLLAARLQGAVALGRGPAVARSLTAVVLPRGGEWMLPRARPVQEWAAAVALEAWDEASSLTAALHAPPGASWPSAPWLDDVAV-----------------TLEALARRSRQAERILEAS 927
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20762.6269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN13_ECTSI1.470e-4055.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCT0_9PHAE2.040e-4053.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20762contigL-elsbetiae_contig20762:665..1837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size531
Cds size531
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20762.6269.1prot_L-elsbetiae_contig20762.6269.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20762 665..1837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815853.2681358-CDS-L-elsbetiae_contig20762:664..8271622815853.2681358-CDS-L-elsbetiae_contig20762:664..827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20762 665..827 +
1691683147.0705736-CDS-L-elsbetiae_contig20762:664..8271691683147.0705736-CDS-L-elsbetiae_contig20762:664..827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20762 665..827 +
1622815853.279047-CDS-L-elsbetiae_contig20762:908..10691622815853.279047-CDS-L-elsbetiae_contig20762:908..1069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20762 909..1069 +
1691683147.0793223-CDS-L-elsbetiae_contig20762:908..10691691683147.0793223-CDS-L-elsbetiae_contig20762:908..1069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20762 909..1069 +
1622815853.2884085-CDS-L-elsbetiae_contig20762:1630..18371622815853.2884085-CDS-L-elsbetiae_contig20762:1630..1837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20762 1631..1837 +
1691683147.0874703-CDS-L-elsbetiae_contig20762:1630..18371691683147.0874703-CDS-L-elsbetiae_contig20762:1630..1837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20762 1631..1837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20762.6269.1

>prot_L-elsbetiae_contig20762.6269.1 ID=prot_L-elsbetiae_contig20762.6269.1|Name=mRNA_L-elsbetiae_contig20762.6269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
QEGLDGADTAFRITALGEASLEHVVGGPDNQWARSFFSHEEKSSDDNNDD
NNDIHEGTRGLSVPLTLLAARLQGAVATGRGPAVARALTATVPPFGGEWM
LPRARPVQEWAASVALEAWDEACSLLARLRPDSPPPPPPSSSSSSSSSSS
SSERLEVSALDAVARRGRQVERIVEAS
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mRNA from alignment at L-elsbetiae_contig20762:665..1837+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20762.6269.1 ID=mRNA_L-elsbetiae_contig20762.6269.1|Name=mRNA_L-elsbetiae_contig20762.6269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1173bp|location=Sequence derived from alignment at L-elsbetiae_contig20762:665..1837+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGGGGTTAGACGGCGCCGACACGGCGTTCCGCATCACCGCCTTGGG
CGAGGCCTCGCTGGAGCACGTCGTGGGCGGCCCGGACAACCAGTGGGCAC
GTTCCTTCTTTTCTCACGAGGAGAAGAGCAGCGACGACAACAACGACGAC
AACAACGACATCCGTGGTTTATCGCCGGCAAGGGAAGATGGCGTCCCGGC
GGTGGCGGCGGTGGCGGCGGTGCCGGCGCTAGGTAGCGGGGAAGACGAGG
GAACGAGGGGTTTGTCGGTGCCCCTGACGCTGCTCGCAGCGCGTCTGCAG
GGCGCGGTGGCGACGGGGAGGGGCCCCGCGGTTGCGAGAGCGCTGACGGC
GACCGTGCCTCCGTTCGGGGGAGAATGGATGCTGCCACGCGCTCGCCCAG
TTCAGGTGACACAGTACGTGTAGTCCCGGTTAAGTTGATAAATAGTCCAG
GAGGATTGGGATTGCCGACTTTTCCCGTGCGCTTGTTTTCATTCTCTCTC
TTGCCTGCATATTTTTCTGATATTTTTCTGCAGTGCGCCATGCGTGAGTG
TACGTACGTAACTCGAAAAGAATATGTGTGTGTGTTTGTGTGTGTGTGTT
GTGTGTGTGAGTGTGTGTGTGTTCGTTACGCTTCGGCTGCAGGAGAAACC
GAGTTTTAAAAATCTGTCCGTTCAGGGGGTGTGGTATCTAGTGTCACCTA
CGGTACGTACGCGCCAAGGCTGTTTTTTCCCCCGCTTGTCTTTTCATTGC
CATGCGTGCGTGTAAATACTTCTACATAGGTGCGTGTGCGTGTGCGTGTG
CGCGTGTGTGTTTTTTTTGTATTTCTTTTTTCCCTCCCATTATTGGCATA
TTCGTCGTCTGCCCCACTGGCGCCCCCGTACTCCACTACGACTATCTAGA
CGGCCCGACCGAACCGGGGTCGCGTGTGTGTGTGTGTTGTGTTCGTTCCG
TTCGCTTCGGCTGCAGGAGTGGGCGGCCTCCGTGGCCTTGGAGGCTTGGG
ACGAGGCGTGCTCGCTCCTGGCGCGGCTTCGGCCGGACTCACCTCCGCCG
CCGCCGCCGTCATCATCATCGTCATCATCGTCGTCGTCGTCGTCGTCGGA
GCGGCTCGAGGTCTCGGCGCTCGACGCTGTCGCGCGCCGTGGTCGTCAAG
TGGAGCGCATCGTCGAGGCCTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20762:665..1837+

>mRNA_L-elsbetiae_contig20762.6269.1 ID=mRNA_L-elsbetiae_contig20762.6269.1|Name=mRNA_L-elsbetiae_contig20762.6269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig20762:665..1837+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGGGGTTAGACGGCGCCGACACGGCGTTCCGCATCACCGCCTTGGG
CGAGGCCTCGCTGGAGCACGTCGTGGGCGGCCCGGACAACCAGTGGGCAC
GTTCCTTCTTTTCTCACGAGGAGAAGAGCAGCGACGACAACAACGACGAC
AACAACGACATCCCAGGAGGGGTTAGACGGCGCCGACACGGCGTTCCGCA
TCACCGCCTTGGGCGAGGCCTCGCTGGAGCACGTCGTGGGCGGCCCGGAC
AACCAGTGGGCACGTTCCTTCTTTTCTCACGAGGAGAAGAGCAGCGACGA
CAACAACGACGACAACAACGACATCCACGAGGGAACGAGGGGTTTGTCGG
TGCCCCTGACGCTGCTCGCAGCGCGTCTGCAGGGCGCGGTGGCGACGGGG
AGGGGCCCCGCGGTTGCGAGAGCGCTGACGGCGACCGTGCCTCCGTTCGG
GGGAGAATGGATGCTGCCACGCGCTCGCCCAGTTCAGACGAGGGAACGAG
GGGTTTGTCGGTGCCCCTGACGCTGCTCGCAGCGCGTCTGCAGGGCGCGG
TGGCGACGGGGAGGGGCCCCGCGGTTGCGAGAGCGCTGACGGCGACCGTG
CCTCCGTTCGGGGGAGAATGGATGCTGCCACGCGCTCGCCCAGTTCAGGA
GTGGGCGGCCTCCGTGGCCTTGGAGGCTTGGGACGAGGCGTGCTCGCTCC
TGGCGCGGCTTCGGCCGGACTCACCTCCGCCGCCGCCGCCGTCATCATCA
TCGTCATCATCGTCGTCGTCGTCGTCGTCGGAGCGGCTCGAGGTCTCGGC
GCTCGACGCTGTCGCGCGCCGTGGTCGTCAAGTGGAGCGCATCGTCGAGG
CCTCCGAGTGGGCGGCCTCCGTGGCCTTGGAGGCTTGGGACGAGGCGTGC
TCGCTCCTGGCGCGGCTTCGGCCGGACTCACCTCCGCCGCCGCCGCCGTC
ATCATCATCGTCATCATCGTCGTCGTCGTCGTCGTCGGAGCGGCTCGAGG
TCTCGGCGCTCGACGCTGTCGCGCGCCGTGGTCGTCAAGTGGAGCGCATC
GTCGAGGCCTCC
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